From adc001086b4e73c4dfb70392f243daeb5b6de272 Mon Sep 17 00:00:00 2001
From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com>
Date: Thu, 2 Nov 2023 14:47:28 +0000
Subject: [PATCH] chore(deps): update dependency anndata to v0.10.3

---
 poetry.lock    | 38 ++++++++++++++++++++++++++++----------
 pyproject.toml |  2 +-
 2 files changed, 29 insertions(+), 11 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 9bb5e88a7..edf7e4145 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -207,27 +207,30 @@ vine = ">=5.0.0"
 
 [[package]]
 name = "anndata"
-version = "0.8.0"
+version = "0.10.3"
 description = "Annotated data."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
 files = [
-    {file = "anndata-0.8.0-py3-none-any.whl", hash = "sha256:2a929360c3c893370865e8ee3d3b9d95ee93239da91bafc5bf5f3c306796746e"},
-    {file = "anndata-0.8.0.tar.gz", hash = "sha256:94d2cc6f76c0317c0ac28564e3092b313b7ad19c737d66701961f3e620b9066e"},
+    {file = "anndata-0.10.3-py3-none-any.whl", hash = "sha256:ec27c203c4d2f0b3a92fb9ca21692ac6022f71dd3fbc3e32d8c54cae59b5f7d8"},
+    {file = "anndata-0.10.3.tar.gz", hash = "sha256:3a40eb6a30e976a3f2678a09e89cd8819bb19b3944278b94eb2d568060d30344"},
 ]
 
 [package.dependencies]
+array-api-compat = "*"
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 h5py = ">=3"
 natsort = "*"
 numpy = ">=1.16.5"
 packaging = ">=20"
-pandas = ">=1.1.1"
+pandas = ">=1.1.1,<2.1.0rc0 || >2.1.0rc0,<2.1.2 || >2.1.2"
 scipy = ">1.4"
 
 [package.extras]
-dev = ["black (>=20.8b1)", "docutils", "setuptools_scm"]
-doc = ["nbsphinx", "scanpydoc (>=0.7.3)", "sphinx (>=4.1,<4.2)", "sphinx-autodoc-typehints (>=1.11.0)", "sphinx-rtd-theme", "sphinx_issues", "typing_extensions", "zarr"]
-test = ["boltons", "dask[array]", "joblib", "loompy (>=3.0.5)", "matplotlib", "openpyxl", "pytest (>=6.0)", "pytest-cov (>=2.10)", "scanpy", "sklearn", "zarr"]
+dev = ["pytest-xdist", "setuptools-scm"]
+doc = ["awkward (>=2.0.7)", "ipython", "myst-parser", "nbsphinx", "scanpydoc (>=0.9)", "sphinx (>=4.4)", "sphinx-autodoc-typehints (>=1.11.0)", "sphinx-book-theme (>=1.0.1)", "sphinx-copybutton", "sphinx-design (>=0.5.0)", "sphinx-issues", "sphinxext-opengraph", "zarr"]
+gpu = ["cupy"]
+test = ["awkward (>=2.3)", "boltons", "dask[array,distributed]", "httpx", "joblib", "loompy (>=3.0.5)", "matplotlib", "openpyxl", "pyarrow", "pytest (>=6.0)", "pytest-cov (>=2.10)", "pytest-memray", "scanpy", "scikit-learn", "zarr"]
 
 [[package]]
 name = "annoy"
@@ -272,6 +275,21 @@ files = [
     {file = "appnope-0.1.3.tar.gz", hash = "sha256:02bd91c4de869fbb1e1c50aafc4098827a7a54ab2f39d9dcba6c9547ed920e24"},
 ]
 
+[[package]]
+name = "array-api-compat"
+version = "1.4"
+description = "A wrapper around NumPy and other array libraries to make them compatible with the Array API standard"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "array_api_compat-1.4-py3-none-any.whl", hash = "sha256:326383f5423716922724199988084250ca41074c7938bed6f9cea95d8d70f833"},
+    {file = "array_api_compat-1.4.tar.gz", hash = "sha256:d49f00eb66b436cf3a6026d6f43c115d3e058a3a9936536b0bac33dd470e8b4d"},
+]
+
+[package.extras]
+cupy = ["cupy"]
+numpy = ["numpy"]
+
 [[package]]
 name = "astropy"
 version = "5.2.2"
@@ -1785,7 +1803,7 @@ lazy-imports = ["etils[ecolab]"]
 name = "exceptiongroup"
 version = "1.1.1"
 description = "Backport of PEP 654 (exception groups)"
-optional = true
+optional = false
 python-versions = ">=3.7"
 files = [
     {file = "exceptiongroup-1.1.1-py3-none-any.whl", hash = "sha256:232c37c63e4f682982c8b6459f33a8981039e5fb8756b2074364e5055c498c9e"},
@@ -7968,4 +7986,4 @@ plotting = ["annoy", "matplotlib-venn", "statannotations"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9, <3.11"
-content-hash = "d939caa901c3a7cf2b16bbe2516cd8a0a8d8e419f1fff71017bc24e6a66f9319"
+content-hash = "e36a5ad93397834426b63f35f4795f07f91fe34451ecac0988fa7bc5acaa56be"
diff --git a/pyproject.toml b/pyproject.toml
index 8859f03f5..2f5521c67 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,7 +24,7 @@ Changelog = "https://github.com/pinellolab/pyrovelocity/releases"
 [tool.poetry.dependencies]
 # required
 adjusttext = "~0.7.3"
-anndata = "0.8.0"
+anndata = "0.10.3"
 astropy = "5.2.2"
 click = ">=8.0.1"
 colorlog = "^6.7.0"