update tutorials

Author: huidongchen

docs/source/conf.py

@@ -31,7 +31,7 @@
 from urllib.request import urlretrieve  # noqa: E402
 
 notebooks_url = "https://github.com/huidongchen/simba_tutorials/raw/main/"
-notebooks = [
+notebooks_v1_0 = [
     "rna_10xpmbc_all_genes.ipynb",
     "atac_buenrostro2018_peaks_and_sequences.ipynb",
     "multiome_shareseq.ipynb",
@@ -40,12 +40,20 @@
     "rna_human_pancreas.ipynb",
     "multiome_10xpmbc10k_integration.ipynb",
 ]
-for nb in notebooks:
+notebooks_v1_1 = [
+    "rna_10x_mouse_brain_1p3M.ipynb",
+]
+for nb in notebooks_v1_0:
     try:
-        urlretrieve(notebooks_url + nb, nb)
+        urlretrieve(notebooks_url + "v1.0/" + nb, nb)
     except Exception:
         pass
 
+for nb in notebooks_v1_1:
+    try:
+        urlretrieve(notebooks_url + "v1.1/" + nb, nb)
+    except Exception:
+        pass
 
 # -- General configuration ---------------------------------------------------
 

docs/source/index.rst

@@ -1,4 +1,4 @@
-|Docs| |CI| |Install with conda| |Last updated| |Downloads| |License| |Codecov|
+|CI| |Docs| |Install with conda| |Codecov| |Last updated| |Downloads| |License|
 
 **SIMBA**: **SI**\ ngle-cell e\ **MB**\ edding **A**\ long with features
 ========================================================================
@@ -43,6 +43,7 @@ SIMBA is a method to embed cells along with their defining features such as gene
    rna_mouse_atlas
    rna_human_pancreas
    multiome_10xpmbc10k_integration
+   rna_10x_mouse_brain_1p3M
 
 
 .. |Docs| image:: https://readthedocs.org/projects/simba-bio/badge/?version=latest