This repository has been archived by the owner on Aug 19, 2024. It is now read-only.
forked from chiroptical/crc-quicksummary
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathposter.tex
306 lines (276 loc) · 10.8 KB
/
poster.tex
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
\documentclass[landscape,a0b,final]{a0poster}
% Useful Packages
\usepackage{stix}
\usepackage{epsfig}
\usepackage{multicol}
\usepackage{pstricks,pst-grad}
\usepackage{minted}
\usepackage{hyperref}
\usepackage[T1]{fontenc}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Definition of some variables and colors
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\setlength{\columnsep}{3cm}
\setlength{\columnseprule}{2mm}
\setlength{\parindent}{0.0cm}
% Useful Commands
\newcommand{\code}[1]{\mintinline{bash}{#1}}
\newcommand{\myurl}[1]{\href{#1}{\color{blue}{#1}}}
\newcommand{\pygment}[3]{\inputminted[bgcolor=lightgray,linenos,fontsize=#1]{#2}{#3}}
\newcommand{\ig}[2]{\includegraphics[width=#1\linewidth]{#2}}
\newcommand{\mysection}[1]{
\begin{center}
\pbox{0.8\columnwidth}{}{linewidth=3mm,framearc=0.3,linecolor=black,fillstyle=gradient,gradangle=0,gradbegin=white,gradend=white,gradmidpoint=1.0,framesep=0.5em}{
\begin{center}
\Large\color{black}{\bf{#1}}
\end{center}
}
\end{center}
\vspace{0.25cm}
}
\newcommand{\background}[3]{
\newrgbcolor{cgradbegin}{#1}
\newrgbcolor{cgradend}{#2}
\psframe[fillstyle=gradient,gradend=cgradend,
gradbegin=cgradbegin,gradmidpoint=#3](0.,0.)(1.\textwidth,-1.\textheight)
}
\newenvironment{poster}{
\begin{center}
\begin{minipage}[c]{0.981\textwidth}
}{
\end{minipage}
\end{center}
}
\newenvironment{pcolumn}[1]{
\begin{minipage}{#1\textwidth}
\begin{center}
}{
\end{center}
\end{minipage}
}
\newcommand{\pbox}[4]{
\psshadowbox[#3]{
\begin{minipage}[t][#2][t]{#1}
#4
\end{minipage}
}}
\newcommand{\myfig}[3][0]{
\begin{center}
\vspace{0.25cm}
\includegraphics[width=#3\hsize,angle=#1]{#2}
\nobreak\medskip
\end{center}}
\setcounter{figure}{1}
\newcommand{\mycaption}[1]{
\vspace{0.25cm}
\begin{quote}
{{\sc Figure} \arabic{figure}: #1}
\end{quote}
\vspace{0.25cm}
\stepcounter{figure}
}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%% Begin of Document
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{document}
\newrgbcolor{pittblue}{.11 .16 .34}
\newrgbcolor{pittgold}{.80 .72 .49}
\newrgbcolor{white}{1. 1. 1.}
\newrgbcolor{black}{0. 0. 0.}
\background{1. 1. 1.}{1. 1. 1.}{0.5}
\vspace*{0.25cm} %Controls white space on top of poster
\begin{poster}
%%%%%%%%%%%%%%%%%%%%%
%%% Header
%%%%%%%%%%%%%%%%%%%%%
\begin{center}
\begin{pcolumn}{0.98}
\pbox{0.98\textwidth}{}{linewidth=1.75mm,framearc=0.3,linecolor=black,fillstyle=gradient,gradangle=0,gradbegin=white,gradend=white,gradmidpoint=1.0,framesep=1em}{
\begin{minipage}[c][7cm][c]{0.98\textwidth}
\begin{center}
\color{black}{
\hspace{5cm}
{\sc \Huge Quick Summary}\\%[5mm]
\hspace{5cm}
{\sc \Huge Center for Research Computing\\[5mm]
\hspace{5cm}
{\sc \Huge University of Pittsburgh}}
}
\end{center}
\end{minipage}
}
\end{pcolumn}
\end{center}
\vspace*{0.05cm} %Spacing between banner and text
%%%%%%%%%%%%%%%%%%%%%
%%% Content
%%%%%%%%%%%%%%%%%%%%%
%%% Begin of Multicols-Enviroment
\begin{multicols}{3}
\mysection{Useful Links}
\Large
\begin{center}
\begin{itemize}
\item H2P Documentation: \\
\myurl{https://crc.pitt.edu/h2p}
\item HTC Documentation: \\
\myurl{https://crc.pitt.edu/htc}
\item Submit a Ticket: \\
\myurl{https://crc.pitt.edu/tickets}
\item CRC Status: \\
\myurl{https://crc.pitt.edu/status}
\item Proposals, Renewals, and Allocations: \\
\myurl{https://crc.pitt.edu/apply}
\item Hardware Description: \\
\myurl{https://crc.pitt.edu/Resource-Description-Proposal-Language}
\item Submit Citations: \\
\myurl{https://crc.pitt.edu/doi}
\item Submit Feedback: \\
\myurl{https://crc.pitt.edu/contact}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Access Environments}
\Large
\begin{center}
\begin{itemize}
\item \textbf{Connect to the VPN when off-campus or on Pitt WiFi!}
\begin{itemize}
\item Details: \myurl{https://crc.pitt.edu/h2p\#Off-campus-access}
\end{itemize}
\item Login Nodes: \code{h2p.crc.pitt.edu} or \code{htc.crc.pitt.edu}
\item Jupyter Notebooks: \myurl{https://hub.crc.pitt.edu}
\item Visualization: \myurl{https://viz.crc.pitt.edu}
\item Open OnDemand: \myurl{https://ondemand.htc.crc.pitt.edu}
\item Galaxy: \myurl{https://crc.pitt.edu/galaxy}
\item CLC Genomics: \myurl{https://crc.pitt.edu/clcbioserver}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Storage}
\Large
\begin{center}
\begin{itemize}
\item Mount points and quotas:
\begin{itemize}
\item Isilon (75G per user) \code{/ihome}
\item ZFS (5TB per group) \code{/zfs1} or \code{/zfs2}
\item BGFS (5TB per group) \code{/bgfs}
\end{itemize}
\item Policies:
\begin{itemize}
\item Your home directory will be located in \code{/ihome} and is backed up
\item BGFS and ZFS are \textbf{not} backed up
\item Each group can have up to 5TB on BGFS or ZFS for free
\item To get access to BGFS or ZFS submit a ticket
\end{itemize}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Useful Commands}
\Large
\begin{center}
\begin{itemize}
\item Connect via secure shell \code{ssh <username>@h2p.crc.pitt.edu}
\item Transferring data:
\begin{itemize}
\item \code{scp <file> <username>@h2p.crc.pitt.edu:~} \\
\code{# local to remote}
\item \code{scp <username>@h2p.crc.pitt.edu:~/<file> .} \\
\code{# remote to local}
\end{itemize}
\item Check your filesystem quotas: \code{crc-quota.py}
\item Check your service units quotas: \code{crc-usage.pl}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Software}
\Large
\begin{center}
\begin{itemize}
\item Search all available software: \code{module spider} \\
\code{# Use '/' for search, 'q' quits}
\item Load a module: \code{module load <module>}
\item List loaded modules: \code{module list}
\item Purge your modules: \code{module purge}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Getting Help}
\Large
\begin{center}
\begin{itemize}
\item When submitting a support ticket:
\begin{itemize}
\item Use a descriptive and specific title
\begin{itemize}
\item Bad: Command doesn't work
\item Good: Gaussian is failing with <abbreviated error here>
\end{itemize}
\item Provide enough information for us to reproduce your problem, e.g.
\begin{itemize}
\item The input and output file with exact paths
\end{itemize}
\end{itemize}
\item CRC Consultants with Expertise
\begin{itemize}
\item Kim Wong: Molecular Dynamics | Agent-based Modeling
\item Fangping Mu: Bioinformatics | Computational Biology/Genomics
\item Barry Moore II: Computational Chemistry | Deep Learning
\item Shervin Sammak: Computational Fluid Dynamics
\item Leonardo Bernasconi: Computational Chemistry
\item Firas Shomali: High Performance Computing
\end{itemize}
\item Comments and suggestions for improvement can be submitted at
\myurl{https://crc.pitt.edu/contact}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Slurm Jobs}
\Large
\begin{center}
\begin{itemize}
\item Show your jobs only: \code{crc-squeue.py}
\item Cancel a job: \code{crc-scancel.py <jobid>}
\item Submit an interactive job: \code{crc-interactive.py -s}
\item Submit a batch job: \code{sbatch <file>}
\item Browse clusters and partitions: \code{crc-squeue.py}
\item Add this to the end of your batch scripts: \code{crc-job-stats.py}
\item Example job scripts, browse \code{/ihome/crc/how_to_run}
\item Description of \code{sbatch} arguments:
\begin{itemize}
\item \code{--job-name}: This name shows up in \code{crc-squeue.py}
\item \code{--output}: Standard input/output will be written to this file
\item \code{--time}: How long your job will run for \\
(format: \code{[days-]hours:minutes:seconds}
\item \code{--nodes}: How many nodes your job needs
\item \code{--ntasks-per-node}: How many MPI processes your job
needs per node, pro tip: if you don't know what this means
it should be equal to 1
\item \code{--cpus-per-task}: Either the number of cores or OpenMP threads
\item \code{--cluster}: Run on this cluster, try \code{crc-sinfo.py} to see clusters
\item \code{--partition}: Run on this partition, try \code{crc-sinfo.py} to see partitions
\item \code{--mail-user}: Set to your Pitt email address to get updates (optional), pair with \code{--mail-type=END,FAIL}
\end{itemize}
\item Reasons from \code{crc-squeue.py} (don't submit a ticket unless specified)
\begin{itemize}
\item \code{Priority}: You are waiting in line
\item \code{MaxCPUPerAccount}: You are waiting in line because your group is running on too many cores
\item \code{MaxMemoryPerAccount}: You are waiting in line because your group is using too much memory
\item \code{GrpTresRunMinsLimit}: Your group is out of service units. Submit a ticket!
\end{itemize}
\end{itemize}
\end{center}
\vspace{0.1cm}
\mysection{Notes}
\Large
\begin{center}
\begin{itemize}
\item Is something not working? \myurl{https://crc.pitt.edu/tickets}
\item Suggestion or improvement for this document: \\
\myurl{https://github.com/barrymoo/crc-quicksummary/issues/new}
\end{itemize}
\end{center}
\end{multicols}
\end{poster}
\end{document}