Hi @pmelsted,
Thank you for this cool tool!
I was experimenting with the Bifrost query command line tool and noticed that if I specify a single sequence in the input query FASTA file to search a graph with two colors, the output file returns one query line with an empty query_name column; but if I input two query sequences in the query FASTA file, it outputs two query lines but with the second sequence name in place of the first query and the second query_name is empty. I think this must be a bug (the presence/absence counts are otherwise correct):
$ Bifrost build -k 31 -r ./genome.list --colors -o test
$ Bifrost query -q qry.fa -o qry-test -g test.gfa.gz -C test.color.bfg
$ cat query-test.tsv
query_name genome1.fasta genome2.fasta
qry2 1 1
1 0
I'm using Bifrost v1.3.5 compiled on Linux. I've uploaded the test files to dataset2.tar.gz
Best,
Jessen
Hi @pmelsted,
Thank you for this cool tool!
I was experimenting with the
Bifrost querycommand line tool and noticed that if I specify a single sequence in the input query FASTA file to search a graph with two colors, the output file returns one query line with an emptyquery_namecolumn; but if I input two query sequences in the query FASTA file, it outputs two query lines but with the second sequence name in place of the first query and the secondquery_nameis empty. I think this must be a bug (the presence/absence counts are otherwise correct):$ Bifrost build -k 31 -r ./genome.list --colors -o test $ Bifrost query -q qry.fa -o qry-test -g test.gfa.gz -C test.color.bfg $ cat query-test.tsv query_name genome1.fasta genome2.fasta qry2 1 1 1 0I'm using Bifrost v1.3.5 compiled on Linux. I've uploaded the test files to dataset2.tar.gz
Best,
Jessen