From 6af80e1155e5f414b9af88b5d4a976012902456b Mon Sep 17 00:00:00 2001
From: Michael Wathen <mwathen@cs.ubc.ca>
Date: Mon, 15 Mar 2021 14:53:04 +0000
Subject: [PATCH] Adding basic conda recipe (#3)

* Adding basic conda recipe

* Fixing conda recipe pyfabm install

* Updating conda recipe

* Adding netcdf-fortran to conda build run
---
 conda.recipe/build.sh  | 26 ++++++++++++++++++++++++++
 conda.recipe/meta.yaml | 31 +++++++++++++++++++++++++++++++
 2 files changed, 57 insertions(+)
 create mode 100644 conda.recipe/build.sh
 create mode 100644 conda.recipe/meta.yaml

diff --git a/conda.recipe/build.sh b/conda.recipe/build.sh
new file mode 100644
index 0000000..9cd20c4
--- /dev/null
+++ b/conda.recipe/build.sh
@@ -0,0 +1,26 @@
+
+git clone https://github.com/fabm-model/fabm.git
+git clone https://github.com/gotm-model/code.git gotm
+cd gotm && git submodule update --init --recursive && cd ..
+
+mkdir build_pyfabm && cd build_pyfabm
+cmake ../fabm/src/drivers/python -DFABM_ERSEM_BASE=.. -DCMAKE_INSTALL_PREFIX:PATH=$PREFIX 
+# This makes sure pyfabm is built in the correct enviroment
+# Will be changed once pyfabm install is updated.
+sed -i -e 's/--user//g' cmake_install.cmake
+make -j${CPU_COUNT}
+make install DESTDIR=$PREFIX
+cd ..
+
+mkdir build_0d && cd build_0d
+cmake -DCMAKE_INSTALL_PREFIX:PATH=$PREFIX ../fabm/src/drivers/0d -DGOTM_BASE=../gotm -DFABM_ERSEM_BASE=..
+make -j${CPU_COUNT}
+make install
+cd ..
+
+mkdir build_gotm && cd build_gotm
+cmake -DCMAKE_INSTALL_PREFIX:PATH=$PREFIX ../gotm -DFABM_BASE=../fabm -DFABM_ERSEM_BASE=..
+make -j${CPU_COUNT}
+make install
+cd ..
+
diff --git a/conda.recipe/meta.yaml b/conda.recipe/meta.yaml
new file mode 100644
index 0000000..90b7d5b
--- /dev/null
+++ b/conda.recipe/meta.yaml
@@ -0,0 +1,31 @@
+
+package:
+  name: ersem
+  version: 20.10
+
+source:
+  path: ..
+
+
+requirements:
+  build:
+    - git
+    - cmake
+    - make
+    - netcdf-fortran
+    - gfortran_linux-64
+    - libgfortran4
+    - numpy
+    - wheel
+
+  run:
+    - python
+    - numpy
+    - matplotlib
+    - netCDF4
+    - netcdf-fortran
+
+about:
+  home: https://github.com/pmlmodelling/ersem
+  summary: "European Regional Seas Ecosystem Model (ERSEM) is a marine ecosystem model. It describes the biogeochemical cycling of carbon, nitrogen, phosphorus, silicon, oxygen and iron through pelagic and benthic ecosystems. The ecosystem is divided into functional types, which are further subdivided by traits such as size."
+  license: GPL-3