From 6f6b6d9ed2e09913244d0aa79aad5e306274cd9e Mon Sep 17 00:00:00 2001 From: Gennadi Lessin Date: Thu, 2 Nov 2023 10:42:28 +0000 Subject: [PATCH] added initialization to all variables --- testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml | 4 ++++ testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml | 4 ++++ testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml | 4 ++++ testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml | 1 + .../fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml | 4 ++++ .../fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml | 1 + 6 files changed, 18 insertions(+) diff --git a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml index 7eeb2f5..977415f 100644 --- a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml +++ b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-denit.yaml @@ -67,6 +67,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base @@ -803,6 +804,7 @@ instances: minD: 0.0001 # minimum depth of zero-concentration isocline (m) initialization: o: 0.0225 # oxygen (mmol/m^2) + o_deep: 0 # oxygen below zero isocline (mmol/m^2) coupling: o_pel: O2/o # pelagic oxygen (mmol/m^3) G3: @@ -863,6 +865,8 @@ instances: K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2) G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2) layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m) + initialization: + G4n: 0 # dinitrogen gas (mmol N/m^2) H1: long_name: benthic aerobic bacteria model: ersem/benthic_bacteria diff --git a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml index 5e9dfee..f3942c6 100644 --- a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml +++ b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop-n2o.yaml @@ -65,6 +65,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base @@ -796,6 +797,7 @@ instances: minD: 0.0001 # minimum depth of zero-concentration isocline (m) initialization: o: 0.0225 # oxygen (mmol/m^2) + o_deep: 0 # oxygen below zero isocline (mmol/m^2) coupling: o_pel: O2/o # pelagic oxygen (mmol/m^3) G5: @@ -868,6 +870,8 @@ instances: K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2) G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2) layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m) + initialization: + G4n: 0 # dinitrogen gas (mmol N/m^2) H1: long_name: benthic aerobic bacteria model: ersem/benthic_bacteria diff --git a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml index dcd8402..bf2a39b 100644 --- a/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml +++ b/testcases/fabm-ersem-15.06-L4-ben-docdyn-iop.yaml @@ -59,6 +59,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base @@ -787,6 +788,7 @@ instances: minD: 0.0001 # minimum depth of zero-concentration isocline (m) initialization: o: 0.0225 # oxygen (mmol/m^2) + o_deep: 0 # oxygen below zero isocline (mmol/m^2) coupling: o_pel: O2/o # pelagic oxygen (mmol/m^3) G3: @@ -847,6 +849,8 @@ instances: K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2) G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2) layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m) + initialization: + G4n: 0 # dinitrogen gas (mmol N/m^2) H1: long_name: benthic aerobic bacteria model: ersem/benthic_bacteria diff --git a/testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml b/testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml index 2a6d672..c06721d 100644 --- a/testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml +++ b/testcases/fabm-ersem-15.06-L4-noben-docdyn-iop.yaml @@ -59,6 +59,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base diff --git a/testcases/fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml b/testcases/fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml index 31cab9e..56d7134 100644 --- a/testcases/fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml +++ b/testcases/fabm-ersem-Blackford2004-L4-ben-stdbac-stdlight.yaml @@ -57,6 +57,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base @@ -768,6 +769,7 @@ instances: minD: 0.0001 # minimum depth of zero-concentration isocline (m) initialization: o: 0.0225 # oxygen (mmol/m^2) + o_deep: 0 # oxygen below zero isocline (mmol/m^2) coupling: o_pel: O2/o # pelagic oxygen (mmol/m^3) G3: @@ -828,6 +830,8 @@ instances: K4n2: K4/per_layer/n2 # benthic ammonium in 2nd layer (mmol N/m^2) G2o2: G2/per_layer/o2 # oxygen in 2nd layer (mmol O_2/m^2) layer2_thickness: ben_col/layer2_thickness # thickness of 2nd layer (m) + initialization: + G4n: 0 # dinitrogen gas (mmol N/m^2) H1: long_name: benthic aerobic bacteria model: ersem/benthic_bacteria diff --git a/testcases/fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml b/testcases/fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml index df2137d..937b179 100644 --- a/testcases/fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml +++ b/testcases/fabm-ersem-Blackford2004-L4-noben-stdbac-stdlight.yaml @@ -57,6 +57,7 @@ instances: iswbioalk: 1 # use bioalkalinity (0: off, 1: on), default = 1 initialization: c: 2130.0 # total dissolved inorganic carbon (mmol C/m^3) + bioalk: 0 # bioalkalinity (mmol/m^3) R1: long_name: labile dissolved organic matter model: ersem/pelagic_base