From a7e5db0790acf3a1c8c58a36611c3da02cf952e1 Mon Sep 17 00:00:00 2001 From: Nate Pope Date: Sat, 6 Jul 2024 09:15:42 -0700 Subject: [PATCH 1/2] Update changelog --- CHANGELOG.rst | 46 +++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 43 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 9e13be4ec..cdda41eff 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,11 +1,13 @@ --------------------- -[0.2.1] - 2023-XX-XX --------------------- +--------------------- +[0.2.1a] - 2024-07-06 +--------------------- **Bug fixes**: - Updates to SLiM support: updated the `active` flag in the SLiM code to be integer.` +- Factor of two error fixed in HomSap/Gamma_K17 DFE (:user:`RyanGutenkunst`, :pr:`1478`) + **Breaking changes**: - The `time_units` attribute of tree sequence metadata is now set to "generations" @@ -46,6 +48,44 @@ - Mus musculus (:user:`peterdfields`, :pr:`1437`). QC'd by :user:`igronau`, :pr:`1454`. +- Orzya sativa (:user:`ornobalam`, :pr:`1453`). + QC'd by :user:`minesrebollo`, :pr:`1461` + +- Phocoena sinus (:user:`igronau`, :pr:`1514`). + QC'd by :user:`ckyriazis`, :pr:`1538` + +**New DFEs**: + +- HomSap/LogNormal_H17 (:user:`RyanGutenkunst`, :pr:`1480`) + +- HomSap/Mixed_K23 (:user:`chriscrsmith`, :pr:`1505`) + +- PhoSin/Gamma_R22 (:user:`igronau`, :pr:`1547`) + QC'd by :user:`ckyriazis`, :pr:`1560` + +- Generic "uniform" DFE (:user:`petrelharp`, :pr:`1492`) + +**New demographic models**: + +- MusMus/DomesticusEurope_1F22 (:user:`peterdfields`, :pr:`1485`) + QC'd by :usr:`igronau`, :pr:`1531` + +- MusMus/MusculusKorea_1F22 (:user:`peterdfields`, :pr:`1485`) + QC'd by :usr:`igronau`, :pr:`1531` + +- MusMus/CastaneusIndia_1F22 (:user:`peterdfields`, :pr:`1485`) + QC'd by :usr:`igronau`, :pr:`1531` + +- OrySat/BottleneckMigration_3C07 (:user:`ornobalam`, :pr:`1453`) + QC'd by :user:`petrelharp`, :pr:`1524` + +- PhoSin/Vaquita2Epoch_1R22 (:user:`igronau`, :pr:`1526`) + QC'd by :user:`ckyriazis`, :pr:`1538` + +**New annotations**: + +- PhoSin exons and CDS (:user:`chriscrsmith`, :pr:`1520`) + -------------------- [0.2.0] - 2022-11-01 -------------------- From cfb0ef68c5f7e7a644d3115a6409948b8286ad78 Mon Sep 17 00:00:00 2001 From: Nate Pope Date: Sat, 6 Jul 2024 09:31:27 -0700 Subject: [PATCH 2/2] Typo in changelog --- CHANGELOG.rst | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index cdda41eff..3854a2c32 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -68,13 +68,13 @@ **New demographic models**: - MusMus/DomesticusEurope_1F22 (:user:`peterdfields`, :pr:`1485`) - QC'd by :usr:`igronau`, :pr:`1531` + QC'd by :user:`igronau`, :pr:`1531` - MusMus/MusculusKorea_1F22 (:user:`peterdfields`, :pr:`1485`) - QC'd by :usr:`igronau`, :pr:`1531` + QC'd by :user:`igronau`, :pr:`1531` - MusMus/CastaneusIndia_1F22 (:user:`peterdfields`, :pr:`1485`) - QC'd by :usr:`igronau`, :pr:`1531` + QC'd by :user:`igronau`, :pr:`1531` - OrySat/BottleneckMigration_3C07 (:user:`ornobalam`, :pr:`1453`) QC'd by :user:`petrelharp`, :pr:`1524`