From 1352ec08ed8f4ff1368c9a83f3a971f759f8ccd7 Mon Sep 17 00:00:00 2001
From: MattWellie <mattwellie@gmail.com>
Date: Fri, 29 Sep 2023 10:08:03 +1000
Subject: [PATCH] install VEP speedup modules

---
 images/ensembl-vep/Dockerfile | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/images/ensembl-vep/Dockerfile b/images/ensembl-vep/Dockerfile
index 41ae856..67ee511 100644
--- a/images/ensembl-vep/Dockerfile
+++ b/images/ensembl-vep/Dockerfile
@@ -71,6 +71,7 @@ RUN export DEBIAN_FRONTEND=noninteractive \
 	&& make \
 	&& make install \
 	&& cd .. \
-	&& rm -rf samtools-${HTS_VERSION}.tar.bz2 samtools-${HTS_VERSION}
+	&& rm -rf samtools-${HTS_VERSION}.tar.bz2 samtools-${HTS_VERSION} \
+    PERL_MM_USE_DEFAULT=1 cpan Ensembl::XS Bio::DB::HTS
 
 ENV PATH="/opt/vep/src/ensembl-vep/bin:$PATH"