diff --git a/images.toml b/images.toml index 485aa29..55de8f1 100644 --- a/images.toml +++ b/images.toml @@ -11,6 +11,7 @@ expansionhunter_bw2 = 'b85cba004fba4e0223e632fae576bc7fad0da804' fastp = '0.23.4' fastqe = '0.3.1' fastqc = '0.11.9' +finemap = '1.4.2' fraser = '1.12.1' gatk = '4.2.6.1' gatk_gcnv = '4.5.0.0' diff --git a/images/finemap/Dockerfile b/images/finemap/Dockerfile new file mode 100644 index 0000000..a4e18ea --- /dev/null +++ b/images/finemap/Dockerfile @@ -0,0 +1,16 @@ +FROM debian:bullseye-slim + +WORKDIR /tmp + +# Install dev libraries +RUN apt-get update \ + && apt-get install -y --no-install-recommends \ + curl \ + libgomp1 \ + && apt-get clean + +RUN curl -L http://www.christianbenner.com/finemap_v1.4.2_x86_64.tgz -o finemap.tgz \ + && tar zxvf finemap.tgz && mv finemap_v1.4.2_x86_64/finemap_v1.4.2_x86_64 /usr/local/bin/finemap \ + && chmod +x /usr/local/bin/finemap && rm -rf /tmp/* + +CMD ["bash"]