From 9f80b870170b7242f142680c8648b616a9ee4787 Mon Sep 17 00:00:00 2001
From: Hope Tanudisastro <40783500+hopedisastro@users.noreply.github.com>
Date: Mon, 17 Jun 2024 10:05:43 +1000
Subject: [PATCH] finemap image (#150)

* finemap image

* remove unnecc packages

* Update Dockerfile

* add libgomp1

* eof
---
 images.toml               |  1 +
 images/finemap/Dockerfile | 16 ++++++++++++++++
 2 files changed, 17 insertions(+)
 create mode 100644 images/finemap/Dockerfile

diff --git a/images.toml b/images.toml
index 485aa29..55de8f1 100644
--- a/images.toml
+++ b/images.toml
@@ -11,6 +11,7 @@ expansionhunter_bw2 = 'b85cba004fba4e0223e632fae576bc7fad0da804'
 fastp = '0.23.4'
 fastqe = '0.3.1'
 fastqc = '0.11.9'
+finemap = '1.4.2'
 fraser = '1.12.1'
 gatk = '4.2.6.1'
 gatk_gcnv = '4.5.0.0'
diff --git a/images/finemap/Dockerfile b/images/finemap/Dockerfile
new file mode 100644
index 0000000..a4e18ea
--- /dev/null
+++ b/images/finemap/Dockerfile
@@ -0,0 +1,16 @@
+FROM debian:bullseye-slim
+
+WORKDIR /tmp
+
+# Install dev libraries
+RUN apt-get update \
+    && apt-get install -y --no-install-recommends \
+    curl \
+    libgomp1 \
+    && apt-get clean
+
+RUN curl -L http://www.christianbenner.com/finemap_v1.4.2_x86_64.tgz -o finemap.tgz \
+    && tar zxvf finemap.tgz && mv finemap_v1.4.2_x86_64/finemap_v1.4.2_x86_64 /usr/local/bin/finemap \
+    && chmod +x /usr/local/bin/finemap && rm -rf /tmp/*
+
+CMD ["bash"]