From a0cf44d399ccc0d33d4c2dbe3019fae18aebd205 Mon Sep 17 00:00:00 2001
From: John Marshall <john.marshall@populationgenomics.org.au>
Date: Wed, 18 Sep 2024 11:01:06 +1000
Subject: [PATCH] Retrieve all commits when cloning saige-qtl

We may wish to build commits other than the HEAD of the default branch.
---
 images/saige-qtl/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/images/saige-qtl/Dockerfile b/images/saige-qtl/Dockerfile
index c7a6b4b..bc69165 100644
--- a/images/saige-qtl/Dockerfile
+++ b/images/saige-qtl/Dockerfile
@@ -13,7 +13,7 @@ RUN apt-get update && \
     rm -r /var/lib/apt/lists/* && \
     rm -r /var/cache/apt/* && \
     pip3 install cget click && \
-    git clone --depth 1 https://github.com/weizhou0/qtl.git && \
+    git clone https://github.com/weizhou0/qtl.git && \
     cd qtl && \
     git checkout $VERSION && \
     Rscript extdata/install_packages.R && \