From 315bc0ab86737c5bc9173bbaabd5cb4415bed038 Mon Sep 17 00:00:00 2001
From: Michael Harper <michael.harper@populationgenomics.org.au>
Date: Wed, 17 Jan 2024 15:39:04 +1100
Subject: [PATCH] correct assay["type"] assignment

---
 scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py b/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py
index a7ce5ef60..d1124a184 100644
--- a/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py
+++ b/scripts/add_nagim_gvcfs_to_tob_wgs_test_metamist.py
@@ -135,7 +135,7 @@ def main(project: str, project_id: int, sample_path_mappings: str, suffix: str):
                         external_ids=None,
                         assays=[
                             AssayUpsert(
-                                type=sg['assays'][0]['type'],
+                                type=sg['type'],
                                 meta={
                                     'sequencing_type': sg['assays'][0]['meta'][
                                         'sequencing_type'