make failed on docker system

[sandyren]

Hi, I tried to build mixer on the docker (ubuntu OS), it kept showing same failed error, my background is not programming and I googled the error and did not find any solution, any help will be much appreciated! Here is the log information:

~/mixer/src/build# cmake .. && make bgmg -j16
-- Build type: Release
-- C++ compiler: GNU
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND)
CMAKE_C_FLAGS is -fPIC -march=native -ggdb
CMAKE_C_FLAGS_DEBUG is -g -O0
CMAKE_C_FLAGS_RELEASE is -O3 -DNDEBUG
CMAKE_CXX_FLAGS is -std=c++11 -fPIC -march=native -ggdb
CMAKE_CXX_FLAGS_DEBUG is -g -O0
CMAKE_CXX_FLAGS_RELEASE is -O3 -DNDEBUG
-- Boost found.
-- Found Boost components:
program_options;filesystem;system;date_time
-- Boost_LIBRARIES: Boost::program_options;Boost::filesystem;Boost::system;Boost::date_time
-- Configuring done
-- Generating done
-- Build files have been written to: /root/mixer/src
[ 37%] Built target zlibstatic
[ 39%] Building CXX object CMakeFiles/bgmg-static.dir/bgmg_calculator.cc.o
[ 41%] Building CXX object CMakeFiles/bgmg-static.dir/bgmg_calculator_unified.cc.o
[ 44%] Building CXX object CMakeFiles/bgmg-static.dir/bgmg_calculator_legacy.cc.o
[ 46%] Building CXX object CMakeFiles/bgmg-static.dir/ld_matrix.cc.o
[ 48%] Building C object CMakeFiles/bgmg-static.dir/FastDifferentialCoding/fastdelta.c.o
[ 51%] Building CXX object CMakeFiles/bgmg-static.dir/plink_ld.cc.o
[ 53%] Building CXX object CMakeFiles/bgmg-static.dir/plink_common.cc.o
/root/mixer/src/FastDifferentialCoding/fastdelta.c: In function 'compute_deltas':
/root/mixer/src/FastDifferentialCoding/fastdelta.c:26:5: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i prev = _mm_set1_epi32(starting_point);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:26:20: warning: implicit declaration of function '_mm_set1_epi32' [-Wimplicit-function-declaration]
__m128i prev = _mm_set1_epi32(starting_point);
^~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:29:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i curr = _mm_lddqu_si128 (( const __m128i*) input + i );
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:29:25: warning: implicit declaration of function '_mm_lddqu_si128' [-Wimplicit-function-declaration]
__m128i curr = _mm_lddqu_si128 (( const __m128i*) input + i );
^~~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:29:50: error: unknown type name '__m128i'
__m128i curr = _mm_lddqu_si128 (( const __m128i*) input + i );
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:30:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i delta = _mm_sub_epi32(curr,
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:30:25: warning: implicit declaration of function '_mm_sub_epi32' [-Wimplicit-function-declaratio]
__m128i delta = _mm_sub_epi32(curr,
^~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:31:38: warning: implicit declaration of function '_mm_alignr_epi8' [-Wimplicit-function-declaration]
_mm_alignr_epi8(curr, prev, 12));
^~~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:32:9: warning: implicit declaration of function '_mm_storeu_si128' [-Wimplicit-function-declaration]
_mm_storeu_si128((__m128i*)output + i,delta);
^~~~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:32:27: error: '__m128i' undeclared (first use in this function); did you mean '__int128'?
_mm_storeu_si128((__m128i*)output + i,delta);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:32:27: note: each undeclared identifier is reported only once for each function it appears in
/root/mixer/src/FastDifferentialCoding/fastdelta.c:32:35: error: expected expression before ')' token
_mm_storeu_si128((__m128i*)output + i,delta);
^
/root/mixer/src/FastDifferentialCoding/fastdelta.c:35:25: warning: implicit declaration of function '_mm_extract_epi32'; did you mean '__chkp_extract_upper'? [-Wimplicit-function-declaration]
uint32_t lastprev = _mm_extract_epi32(prev,3);
^~~~~~~~~~~~~~~~~
__chkp_extract_upper
/root/mixer/src/FastDifferentialCoding/fastdelta.c: In function 'compute_deltas_inplace':
/root/mixer/src/FastDifferentialCoding/fastdelta.c:46:5: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i prev = _mm_set1_epi32(starting_point);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:49:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i curr = _mm_lddqu_si128 (( const __m128i*) buffer + i );
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:49:50: error: unknown type name '__m128i'
__m128i curr = _mm_lddqu_si128 (( const __m128i*) buffer + i );
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:50:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i delta = _mm_sub_epi32(curr,
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:52:27: error: '__m128i' undeclared (first use in this function); did you mean '__int128'?
_mm_storeu_si128((__m128i*)buffer + i,delta);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:52:35: error: expected expression before ')' token
_mm_storeu_si128((__m128i*)buffer + i,delta);
^
/root/mixer/src/FastDifferentialCoding/fastdelta.c: In function 'compute_prefix_sum':
/root/mixer/src/FastDifferentialCoding/fastdelta.c:67:5: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i prev = _mm_set1_epi32(starting_point);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:70:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i curr = _mm_lddqu_si128 (( const __m128i*) input + i );
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:70:50: error: unknown type name '__m128i'
__m128i curr = _mm_lddqu_si128 (( const __m128i*) input + i );
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:71:15: error: unknown type name '__m128i'
const __m128i _tmp1 = _mm_add_epi32(_mm_slli_si128(curr, 8), curr);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:71:31: warning: implicit declaration of function '_mm_add_epi32' [-Wimplicit-function-declaratio]
const __m128i _tmp1 = _mm_add_epi32(_mm_slli_si128(curr, 8), curr);
^~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:71:45: warning: implicit declaration of function '_mm_slli_si128' [-Wimplicit-function-declaration]
const __m128i _tmp1 = _mm_add_epi32(_mm_slli_si128(curr, 8), curr);
^~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:72:15: error: unknown type name '__m128i'
const __m128i _tmp2 = _mm_add_epi32(_mm_slli_si128(_tmp1, 4), _tmp1);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:73:37: warning: implicit declaration of function '_mm_shuffle_epi32' [-Wimplicit-function-declaration]
prev = _mm_add_epi32(_tmp2, _mm_shuffle_epi32(prev, 0xff));
^~~~~~~~~~~~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:74:27: error: '__m128i' undeclared (first use in this function)
_mm_storeu_si128((__m128i*)output + i,prev);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:74:35: error: expected expression before ')' token
_mm_storeu_si128((__m128i*)output + i,prev);
^
/root/mixer/src/FastDifferentialCoding/fastdelta.c: In function 'compute_prefix_sum_inplace':
/root/mixer/src/FastDifferentialCoding/fastdelta.c:86:5: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i prev = _mm_set1_epi32(starting_point);
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:89:9: error: unknown type name '__m128i'; did you mean '__int128'?
__m128i curr = _mm_lddqu_si128 (( const __m128i*) buffer + i );
^~~~~~~
__int128
/root/mixer/src/FastDifferentialCoding/fastdelta.c:89:50: error: unknown type name '__m128i'
__m128i curr = _mm_lddqu_si128 (( const __m128i*) buffer + i );
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:90:15: error: unknown type name '__m128i'
const __m128i _tmp1 = _mm_add_epi32(_mm_slli_si128(curr, 8), curr);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:91:15: error: unknown type name '__m128i'
const __m128i _tmp2 = _mm_add_epi32(_mm_slli_si128(_tmp1, 4), _tmp1);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:93:27: error: '__m128i' undeclared (first use in this function)
_mm_storeu_si128((__m128i*)buffer + i,prev);
^~~~~~~
/root/mixer/src/FastDifferentialCoding/fastdelta.c:93:35: error: expected expression before ')' token
_mm_storeu_si128((__m128i*)buffer + i,prev);
^
CMakeFiles/bgmg-static.dir/build.make:566: recipe for target 'CMakeFiles/bgmg-static.dir/FastDifferentialCoding/fastdelta.c.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/FastDifferentialCoding/fastdelta.c.o] Error 1
make[3]: *** Waiting for unfinished jobs....
In file included from /root/mixer/src/plink_ld.h:24:0,
from /root/mixer/src/plink_ld.cc:19:
/root/mixer/src/plink_common.h:177:6: error: #error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
#error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
^~~~~
In file included from /root/mixer/src/plink_common.cc:19:0:
/root/mixer/src/plink_common.h:177:6: error: #error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
#error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
^~~~~
/root/mixer/src/plink_common.h:179:12: fatal error: emmintrin.h: No such file or directory
#include <emmintrin.h>
^~~~~~~~~~~~~
/root/mixer/src/plink_common.h:179:12: fatal error: emmintrin.h: No such file or directory
#include <emmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
compilation terminated.
CMakeFiles/bgmg-static.dir/build.make:230: recipe for target 'CMakeFiles/bgmg-static.dir/plink_ld.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/plink_ld.cc.o] Error 1
CMakeFiles/bgmg-static.dir/build.make:254: recipe for target 'CMakeFiles/bgmg-static.dir/plink_common.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/plink_common.cc.o] Error 1
In file included from /root/mixer/src/plink_ld.h:24:0,
from /root/mixer/src/ld_matrix.cc:9:
/root/mixer/src/plink_common.h:177:6: error: #error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
#error "64-bit builds currently require SSE2. Try producing a 32-bit build instead."
^~~~~
/root/mixer/src/plink_common.h:179:12: fatal error: emmintrin.h: No such file or directory
#include <emmintrin.h>
^~~~~~~~~~~~~
compilation terminated.
CMakeFiles/bgmg-static.dir/build.make:158: recipe for target 'CMakeFiles/bgmg-static.dir/ld_matrix.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/ld_matrix.cc.o] Error 1
In file included from /usr/local/include/boost/math/constants/constants.hpp:11:0,
from /root/mixer/src/bgmg_math.h:4,
from /root/mixer/src/bgmg_calculator_impl.h:101,
from /root/mixer/src/bgmg_calculator_legacy.cc:19:
/usr/local/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]

warning "Boost.Math requires C++14"

  ^~~~~~~

In file included from /usr/local/include/boost/math/constants/constants.hpp:11:0,
from /root/mixer/src/bgmg_math.h:4,
from /root/mixer/src/bgmg_calculator_impl.h:101,
from /root/mixer/src/bgmg_calculator_unified.cc:19:
/usr/local/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]

warning "Boost.Math requires C++14"

  ^~~~~~~

In file included from /usr/local/include/boost/math/constants/constants.hpp:11:0,
from /root/mixer/src/bgmg_math.h:4,
from /root/mixer/src/bgmg_calculator_impl.h:101,
from /root/mixer/src/bgmg_calculator.cc:19:
/usr/local/include/boost/math/tools/config.hpp:28:6: warning: #warning "Boost.Math requires C++14" [-Wcpp]

warning "Boost.Math requires C++14"

  ^~~~~~~

In file included from /root/mixer/src/bgmg_calculator_impl.h:103:0,
from /root/mixer/src/bgmg_calculator_unified.cc:19:
/root/mixer/src/fmath.hpp:47:12: fatal error: x86intrin.h: No such file or directory
#include <x86intrin.h>
^~~~~~~~~~~~~
compilation terminated.
In file included from /root/mixer/src/bgmg_calculator_impl.h:103:0,
from /root/mixer/src/bgmg_calculator_legacy.cc:19:
/root/mixer/src/fmath.hpp:47:12: fatal error: x86intrin.h: No such file or directory
#include <x86intrin.h>
^~~~~~~~~~~~~
compilation terminated.
In file included from /root/mixer/src/bgmg_calculator_impl.h:103:0,
from /root/mixer/src/bgmg_calculator.cc:19:
/root/mixer/src/fmath.hpp:47:12: fatal error: x86intrin.h: No such file or directory
#include <x86intrin.h>
^~~~~~~~~~~~~
compilation terminated.
CMakeFiles/bgmg-static.dir/build.make:86: recipe for target 'CMakeFiles/bgmg-static.dir/bgmg_calculator_unified.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/bgmg_calculator_unified.cc.o] Error 1
CMakeFiles/bgmg-static.dir/build.make:110: recipe for target 'CMakeFiles/bgmg-static.dir/bgmg_calculator_legacy.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/bgmg_calculator_legacy.cc.o] Error 1
CMakeFiles/bgmg-static.dir/build.make:62: recipe for target 'CMakeFiles/bgmg-static.dir/bgmg_calculator.cc.o' failed
make[3]: *** [CMakeFiles/bgmg-static.dir/bgmg_calculator.cc.o] Error 1
CMakeFiles/Makefile2:105: recipe for target 'CMakeFiles/bgmg-static.dir/all' failed
make[2]: *** [CMakeFiles/bgmg-static.dir/all] Error 2
CMakeFiles/Makefile2:80: recipe for target 'CMakeFiles/bgmg.dir/rule' failed
make[1]: *** [CMakeFiles/bgmg.dir/rule] Error 2
Makefile:164: recipe for target 'bgmg' failed
make: *** [bgmg] Error 2