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Is there a way to access LD structure via bigsnpr? #452

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garyzhubc opened this issue Oct 8, 2023 · 5 comments
Closed

Is there a way to access LD structure via bigsnpr? #452

garyzhubc opened this issue Oct 8, 2023 · 5 comments

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@garyzhubc
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Is there a way to access LD structure via bigsnpr?
@privefl
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privefl commented Oct 9, 2023

Please clarify your question; I'm not sure I understand what you're asking for.

@garyzhubc
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I was wondering if there's a way to show linkage disequilibrium structure between SNPs using bigsnpr.

@privefl
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privefl commented Oct 16, 2023

To plot it?
I've started a discussion on this 6y ago, but didn't get much feedback on this.
See #4

@garyzhubc
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Seems like something good to have in bigsnpr. Do you intend to package it?

@privefl
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privefl commented Oct 16, 2023

Since I'm not completely satisfied with it, and that I don't really know what people would like to have, I find it difficult to package anything right now.

@privefl privefl closed this as completed Oct 23, 2023
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@privefl @garyzhubc