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CONFIG
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CONFIG
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#------------------------------------------------------------------------------
#
# Put all relevant paths here
# (absolute paths OR relative paths starting inside the main FFPred2 folder)
# You must omit trailing / characters
#------------------------------------------------------------------------------
PFILT /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/bin
BLAST /scratch0/NOT_BACKED_UP/dbuchan/Applications/blast-2.2.26/bin
MAKEMAT /scratch0/NOT_BACKED_UP/dbuchan/Applications/blast-2.2.26/bin
SEQ2MTX /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/bin
PSIPRED /cs/research/bioinf/home1/green/dbuchan/Code/psipred
DISOPRED /cs/research/bioinf/home1/green/dbuchan/Code/disopred316
MEMSAT /cs/research/bioinf/home1/green/dbuchan/Code/memsat-svm
SIGP /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/signalp-4.1
NETPHOS /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/ape-1.0
NETOGLYC /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/netOglyc-3.1d
NETNGLYC /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/netNglyc-1.0
PSORT /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/WoLFPSort-master/bin
LOWC /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/bin
COILS /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/coils
SEQFEAT /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/bin
PEST /cs/research/bioinf/home1/green/dbuchan/Code/FFPred4/packages/EMBOSS-6.4.0/bin
PATH jobs
DB /scratch0/NOT_BACKED_UP/dbuchan/uniref/uniref_test_db/uniref_test.fasta
MASK_DB /scratch0/NOT_BACKED_UP/dbuchan/uniref/uniref_test_db/uniref_test.fasta
SVMLIGHT /scratch0/NOT_BACKED_UP/dbuchan/Applications/svm_light
#------------------------------------------------------------------------------