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Hi,
I'm having the same issue! Did you find a solution to this issue?
Many thanks in advance
Hi mawusseAgbessi,
"Overlap" issue has been corrected by removing "line 79". It's been updated.
If you have the same issue of "DeprecationWarning for 'U' mode in line 156 and 157", then change 'rU' to 'r'. It could be caused by python version. This tools is developed on python 3.5.1. I used python 3.7.2.
Describe the bug
name 'overlap' in line 79 is not defined in extract_barcodes.py and a DeprecationWarning for 'U' mode in line 156 and 157
To Reproduce
Steps to reproduce the behavior:
Expected behavior
Extract UMI barcode
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