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 </div>
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+  
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   <h1>Source code for omc3.model.model_creators.lhc_model_creator</h1><div class="highlight"><pre>
@@ -393,6 +395,7 @@ <h1>Source code for omc3.model.model_creators.lhc_model_creator</h1><div class="
 
            </div>
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+
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diff --git a/_modules/omc3/model/model_creators/ps_model_creator.html b/_modules/omc3/model/model_creators/ps_model_creator.html
index e3e986824..4549518c7 100644
--- a/_modules/omc3/model/model_creators/ps_model_creator.html
+++ b/_modules/omc3/model/model_creators/ps_model_creator.html
@@ -201,6 +201,8 @@
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
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   <h1>Source code for omc3.model.model_creators.ps_model_creator</h1><div class="highlight"><pre>
@@ -246,6 +248,7 @@ <h1>Source code for omc3.model.model_creators.ps_model_creator</h1><div class="h
 
            </div>
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+
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diff --git a/_modules/omc3/model/model_creators/psbooster_model_creator.html b/_modules/omc3/model/model_creators/psbooster_model_creator.html
index 08be4d95a..02ed3d041 100644
--- a/_modules/omc3/model/model_creators/psbooster_model_creator.html
+++ b/_modules/omc3/model/model_creators/psbooster_model_creator.html
@@ -201,6 +201,8 @@
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
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   <h1>Source code for omc3.model.model_creators.psbooster_model_creator</h1><div class="highlight"><pre>
@@ -247,6 +249,7 @@ <h1>Source code for omc3.model.model_creators.psbooster_model_creator</h1><div c
 
            </div>
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+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/model_creator.html b/_modules/omc3/model_creator.html
index 6d26c0b00..0b3dd6c82 100644
--- a/_modules/omc3/model_creator.html
+++ b/_modules/omc3/model_creator.html
@@ -201,6 +201,8 @@
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
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   <h1>Source code for omc3.model_creator</h1><div class="highlight"><pre>
@@ -357,6 +359,7 @@ <h1>Source code for omc3.model_creator</h1><div class="highlight"><pre>
 
            </div>
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diff --git a/_modules/omc3/optics_measurements/beta_from_amplitude.html b/_modules/omc3/optics_measurements/beta_from_amplitude.html
index b7104ce52..7688f0d65 100644
--- a/_modules/omc3/optics_measurements/beta_from_amplitude.html
+++ b/_modules/omc3/optics_measurements/beta_from_amplitude.html
@@ -201,6 +201,8 @@
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   <h1>Source code for omc3.optics_measurements.beta_from_amplitude</h1><div class="highlight"><pre>
@@ -318,6 +320,7 @@ <h1>Source code for omc3.optics_measurements.beta_from_amplitude</h1><div class=
 
            </div>
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+
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   <hr/>
diff --git a/_modules/omc3/optics_measurements/beta_from_phase.html b/_modules/omc3/optics_measurements/beta_from_phase.html
index e1b33261e..e05178c27 100644
--- a/_modules/omc3/optics_measurements/beta_from_phase.html
+++ b/_modules/omc3/optics_measurements/beta_from_phase.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.beta_from_phase</h1><div class="highlight"><pre>
@@ -286,6 +288,18 @@ <h1>Source code for omc3.optics_measurements.beta_from_phase</h1><div class="hig
 <span class="sd">    Returns:</span>
 <span class="sd">        `TfsDataFrame` containing betas and alfas from phase.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
+    <span class="n">n_bpms</span> <span class="o">=</span> <span class="n">meas_input</span><span class="o">.</span><span class="n">range_of_bpms</span>
+    <span class="n">n_bpms_phases</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">phase</span><span class="p">[</span><span class="s2">&quot;MEAS&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">)</span>
+    <span class="k">if</span> <span class="n">n_bpms_phases</span> <span class="o">&lt;</span> <span class="n">n_bpms</span><span class="p">:</span>
+        <span class="n">LOGGER</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Found </span><span class="si">{</span><span class="n">n_bpms_phases</span><span class="si">}</span><span class="s2"> BPMs, but </span><span class="si">{</span><span class="n">n_bpms</span><span class="si">}</span><span class="s2"> &quot;</span>
+                        <span class="s2">&quot;were requested in N-BPM method. Using all available BPMs instead,&quot;</span>
+                        <span class="s2">&quot;the results will still be correct.&quot;</span><span class="p">)</span>
+        <span class="n">n_bpms</span> <span class="o">=</span> <span class="n">n_bpms_phases</span>
+    
+    <span class="k">if</span> <span class="n">n_bpms</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;At least 3 BPMs are required for N-BPM method!&quot;</span>
+                        <span class="sa">f</span><span class="s2">&quot;Instead a range of </span><span class="si">{</span><span class="n">n_bpms</span><span class="si">}</span><span class="s2"> was requested.&quot;</span><span class="p">)</span>
+
     <span class="n">elements</span><span class="p">,</span> <span class="n">error_method</span> <span class="o">=</span> <span class="n">get_elements_with_errors</span><span class="p">(</span><span class="n">meas_input</span><span class="p">,</span> <span class="n">plane</span><span class="p">)</span>
     <span class="n">beta_df</span> <span class="o">=</span> <span class="n">_get_filtered_model_df</span><span class="p">(</span><span class="n">meas_input</span><span class="p">,</span> <span class="n">phase</span><span class="p">,</span> <span class="n">plane</span><span class="p">)</span>
     <span class="n">bk_model</span> <span class="o">=</span> <span class="n">_get_filtered_model_df</span><span class="p">(</span><span class="n">meas_input</span><span class="p">,</span> <span class="n">phase</span><span class="p">,</span> <span class="n">plane</span><span class="p">,</span> <span class="n">best</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
@@ -293,7 +307,7 @@ <h1>Source code for omc3.optics_measurements.beta_from_phase</h1><div class="hig
     <span class="n">betas_alfas</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">((</span><span class="nb">len</span><span class="p">(</span><span class="n">phase</span><span class="p">[</span><span class="s2">&quot;MEAS&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">),</span> <span class="mi">4</span><span class="p">))</span>
     <span class="n">nbpms</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">bk_model</span><span class="o">.</span><span class="n">index</span><span class="p">)</span>
     <span class="n">n_comb</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">zeros</span><span class="p">(</span><span class="n">nbpms</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="nb">int</span><span class="p">)</span>
-    <span class="n">m</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">meas_input</span><span class="o">.</span><span class="n">range_of_bpms</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
+    <span class="n">m</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">n_bpms</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
     <span class="n">loc_range</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">arange</span><span class="p">(</span><span class="o">-</span><span class="n">m</span><span class="p">,</span> <span class="n">m</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
     <span class="n">phases_meas</span> <span class="o">=</span> <span class="n">phase</span><span class="p">[</span><span class="s2">&quot;MEAS&quot;</span><span class="p">]</span> <span class="o">*</span> <span class="n">PI2</span>
     <span class="n">phases_err</span> <span class="o">=</span> <span class="n">phase</span><span class="p">[</span><span class="s2">&quot;ERRMEAS&quot;</span><span class="p">]</span> <span class="o">*</span> <span class="n">PI2</span>
@@ -607,6 +621,10 @@ <h1>Source code for omc3.optics_measurements.beta_from_phase</h1><div class="hig
 <span class="sd">    Returns:</span>
 <span class="sd">        `TfsDataFrame` containing betas and alfas from phase.</span>
 <span class="sd">    &quot;&quot;&quot;</span>
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">phase</span><span class="p">[</span><span class="s2">&quot;MEAS&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+        <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;At least 3 BPMs are required for 3-BPM method!&quot;</span>
+                        <span class="sa">f</span><span class="s2">&quot;Instead only </span><span class="si">{</span><span class="nb">len</span><span class="p">(</span><span class="n">phase</span><span class="p">[</span><span class="s1">&#39;MEAS&#39;</span><span class="p">])</span><span class="si">}</span><span class="s2"> were found in input.&quot;</span><span class="p">)</span>
+
     <span class="n">tune</span><span class="p">,</span> <span class="n">mdltune</span> <span class="o">=</span> <span class="n">meas_and_mdl_tunes</span>
     <span class="n">beta_df</span> <span class="o">=</span> <span class="n">_get_filtered_model_df</span><span class="p">(</span><span class="n">meas_input</span><span class="p">,</span> <span class="n">phase</span><span class="p">,</span> <span class="n">plane</span><span class="p">)</span>
     <span class="c1"># tilt phase advances in order to have the phase advances in a neighbourhood</span>
@@ -704,6 +722,7 @@ <h1>Source code for omc3.optics_measurements.beta_from_phase</h1><div class="hig
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/data_models.html b/_modules/omc3/optics_measurements/data_models.html
index d886c8b1a..f571ac44d 100644
--- a/_modules/omc3/optics_measurements/data_models.html
+++ b/_modules/omc3/optics_measurements/data_models.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.data_models</h1><div class="highlight"><pre>
@@ -393,6 +395,7 @@ <h1>Source code for omc3.optics_measurements.data_models</h1><div class="highlig
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/dispersion.html b/_modules/omc3/optics_measurements/dispersion.html
index 1d90abb37..ad54e00a7 100644
--- a/_modules/omc3/optics_measurements/dispersion.html
+++ b/_modules/omc3/optics_measurements/dispersion.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.dispersion</h1><div class="highlight"><pre>
@@ -465,6 +467,7 @@ <h1>Source code for omc3.optics_measurements.dispersion</h1><div class="highligh
 
            </div>
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+
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diff --git a/_modules/omc3/optics_measurements/dpp.html b/_modules/omc3/optics_measurements/dpp.html
index 4db0ff050..26aed8a86 100644
--- a/_modules/omc3/optics_measurements/dpp.html
+++ b/_modules/omc3/optics_measurements/dpp.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.dpp</h1><div class="highlight"><pre>
@@ -315,6 +317,7 @@ <h1>Source code for omc3.optics_measurements.dpp</h1><div class="highlight"><pre
 
            </div>
           </div>
+
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diff --git a/_modules/omc3/optics_measurements/interaction_point.html b/_modules/omc3/optics_measurements/interaction_point.html
index 0742ec0b8..8e5599b22 100644
--- a/_modules/omc3/optics_measurements/interaction_point.html
+++ b/_modules/omc3/optics_measurements/interaction_point.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.interaction_point</h1><div class="highlight"><pre>
@@ -298,6 +300,7 @@ <h1>Source code for omc3.optics_measurements.interaction_point</h1><div class="h
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/kick.html b/_modules/omc3/optics_measurements/kick.html
index 854d697ec..1c51e7b49 100644
--- a/_modules/omc3/optics_measurements/kick.html
+++ b/_modules/omc3/optics_measurements/kick.html
@@ -201,6 +201,8 @@
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 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.kick</h1><div class="highlight"><pre>
@@ -356,6 +358,7 @@ <h1>Source code for omc3.optics_measurements.kick</h1><div class="highlight"><pr
 
            </div>
           </div>
+
           <footer>
 
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diff --git a/_modules/omc3/optics_measurements/measure_optics.html b/_modules/omc3/optics_measurements/measure_optics.html
index 56de22942..029920acf 100644
--- a/_modules/omc3/optics_measurements/measure_optics.html
+++ b/_modules/omc3/optics_measurements/measure_optics.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.measure_optics</h1><div class="highlight"><pre>
@@ -334,6 +336,7 @@ <h1>Source code for omc3.optics_measurements.measure_optics</h1><div class="high
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/phase.html b/_modules/omc3/optics_measurements/phase.html
index ca01eccfd..5b520edb2 100644
--- a/_modules/omc3/optics_measurements/phase.html
+++ b/_modules/omc3/optics_measurements/phase.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
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   <h1>Source code for omc3.optics_measurements.phase</h1><div class="highlight"><pre>
@@ -275,6 +277,17 @@ <h1>Source code for omc3.optics_measurements.phase</h1><div class="highlight"><p
                                                                              <span class="n">no_errors</span><span class="p">)</span>
         <span class="n">dfs</span> <span class="o">=</span> <span class="n">free_dfs</span> <span class="o">+</span> <span class="n">drv_dfs</span>
 
+
+    <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">phase_advances</span><span class="p">[</span><span class="s2">&quot;MEAS&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">index</span><span class="p">)</span> <span class="o">&lt;</span> <span class="mi">3</span><span class="p">:</span>
+        <span class="n">LOGGER</span><span class="o">.</span><span class="n">warning</span><span class="p">(</span><span class="s2">&quot;Less than 3 non-NaN phase-advances found. &quot;</span>
+                       <span class="s2">&quot;This will most likely lead to errors later on in the N-BPM or 3-BPM methods.</span><span class="se">\n</span><span class="s2">&quot;</span>
+                       <span class="s2">&quot;Common issues to check:</span><span class="se">\n\n</span><span class="s2">&quot;</span>
+                       <span class="s2">&quot;- did you pass the correct tunes to harpy? Possibly also too small tolerance window?</span><span class="se">\n</span><span class="s2">&quot;</span>
+                       <span class="s2">&quot;- did excitation trigger in both planes? BPMs might be cleaned if only found in one plane.</span><span class="se">\n</span><span class="s2">&quot;</span>
+                       <span class="s2">&quot;- are cleaning settings (peak-to-peak, singular-value-cut) too agressive?</span><span class="se">\n</span><span class="s2">&quot;</span>
+                       <span class="s2">&quot;- are you using a machine with less than 3 BPMs? Oh dear.&quot;</span>
+        <span class="p">)</span>
+
     <span class="k">return</span> <span class="p">{</span><span class="s1">&#39;free&#39;</span><span class="p">:</span> <span class="n">phase_advances</span><span class="p">,</span> <span class="s1">&#39;uncompensated&#39;</span><span class="p">:</span> <span class="n">uncompensated_phase_advances</span><span class="p">},</span> <span class="n">dfs</span></div>
 
 
@@ -489,6 +502,7 @@ <h1>Source code for omc3.optics_measurements.phase</h1><div class="highlight"><p
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/rdt.html b/_modules/omc3/optics_measurements/rdt.html
index 561b712a8..294ecc224 100644
--- a/_modules/omc3/optics_measurements/rdt.html
+++ b/_modules/omc3/optics_measurements/rdt.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.optics_measurements.rdt</h1><div class="highlight"><pre>
@@ -492,6 +494,7 @@ <h1>Source code for omc3.optics_measurements.rdt</h1><div class="highlight"><pre
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/toolbox.html b/_modules/omc3/optics_measurements/toolbox.html
index 2d6d16135..a03d86d80 100644
--- a/_modules/omc3/optics_measurements/toolbox.html
+++ b/_modules/omc3/optics_measurements/toolbox.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.optics_measurements.toolbox</h1><div class="highlight"><pre>
@@ -304,6 +306,7 @@ <h1>Source code for omc3.optics_measurements.toolbox</h1><div class="highlight">
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/optics_measurements/tune.html b/_modules/omc3/optics_measurements/tune.html
index 4f981dbdc..231d22602 100644
--- a/_modules/omc3/optics_measurements/tune.html
+++ b/_modules/omc3/optics_measurements/tune.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.optics_measurements.tune</h1><div class="highlight"><pre>
@@ -288,6 +290,7 @@ <h1>Source code for omc3.optics_measurements.tune</h1><div class="highlight"><pr
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/plotting/optics_measurements/utils.html b/_modules/omc3/plotting/optics_measurements/utils.html
index 8e422fc31..0a166ed01 100644
--- a/_modules/omc3/plotting/optics_measurements/utils.html
+++ b/_modules/omc3/plotting/optics_measurements/utils.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.plotting.optics_measurements.utils</h1><div class="highlight"><pre>
@@ -308,6 +310,7 @@ <h1>Source code for omc3.plotting.optics_measurements.utils</h1><div class="high
 
            </div>
           </div>
+
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 <span class="k">def</span> <span class="nf">_get_columns_and_label</span><span class="p">(</span><span class="n">parameter</span><span class="p">,</span> <span class="n">delta</span><span class="p">):</span>
     <span class="n">cal</span><span class="p">:</span> <span class="n">ColumnsAndLabels</span> <span class="o">=</span> <span class="n">FILE_COLUMN_MAPPING</span><span class="p">[</span><span class="n">parameter</span><span class="p">]</span>
     <span class="k">if</span> <span class="n">delta</span><span class="p">:</span>
-        <span class="k">return</span> <span class="n">cal</span><span class="o">.</span><span class="n">delta_column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">error_column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">text_label</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">delta_label</span>
+        <span class="k">return</span> <span class="n">cal</span><span class="o">.</span><span class="n">delta_column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">error_delta_column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">text_label</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">delta_label</span>
     <span class="k">return</span> <span class="n">cal</span><span class="o">.</span><span class="n">column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">error_column</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">text_label</span><span class="p">,</span> <span class="n">cal</span><span class="o">.</span><span class="n">label</span>
 
 
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   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.iotools</h1><div class="highlight"><pre>
@@ -318,11 +320,14 @@ <h1>Source code for omc3.utils.iotools</h1><div class="highlight"><pre>
         <span class="k">return</span> <span class="n">strip_quotes</span><span class="p">(</span><span class="n">value</span><span class="p">)</span></div>
 
 
-<span class="k">class</span> <span class="nc">OptionalStr</span><span class="p">(</span><span class="n">metaclass</span><span class="o">=</span><span class="n">get_instance_faker_meta</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="kc">None</span><span class="p">))):</span>
+<div class="viewcode-block" id="OptionalStr"><a class="viewcode-back" href="../../../modules/utils.html#omc3.utils.iotools.OptionalStr">[docs]</a><span class="k">class</span> <span class="nc">OptionalStr</span><span class="p">(</span><span class="n">metaclass</span><span class="o">=</span><span class="n">get_instance_faker_meta</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="kc">None</span><span class="p">))):</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;A class that allows `str` or `None`.</span>
 <span class="sd">    Can be used in string-lists when individual entries can be `None`.&quot;&quot;&quot;</span>
     <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">value</span><span class="p">):</span>
-        <span class="k">return</span> <span class="n">strip_quotes</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="n">value</span> <span class="o">=</span> <span class="n">strip_quotes</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="nb">str</span><span class="p">)</span> <span class="ow">and</span> <span class="n">value</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s2">&quot;none&quot;</span><span class="p">:</span>
+            <span class="k">return</span> <span class="kc">None</span>
+        <span class="k">return</span> <span class="n">value</span></div>
 
 
 <span class="sd">&quot;&quot;&quot;A class that allows `float`, &#39;int&#39; or `None`.</span>
@@ -351,15 +356,6 @@ <h1>Source code for omc3.utils.iotools</h1><div class="highlight"><pre>
     <span class="k">return</span> <span class="n">value</span></div>
 
 
-<div class="viewcode-block" id="OptionalStr"><a class="viewcode-back" href="../../../modules/utils.html#omc3.utils.iotools.OptionalStr">[docs]</a><span class="k">class</span> <span class="nc">OptionalStr</span><span class="p">(</span><span class="n">metaclass</span><span class="o">=</span><span class="n">get_instance_faker_meta</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="nb">type</span><span class="p">(</span><span class="kc">None</span><span class="p">))):</span>
-<span class="w">    </span><span class="sd">&quot;&quot;&quot;A class that allows `str` or `None`.</span>
-<span class="sd">    Can be used in string-lists when individual entries can be `None`.&quot;&quot;&quot;</span>
-    <span class="k">def</span> <span class="fm">__new__</span><span class="p">(</span><span class="bp">cls</span><span class="p">,</span> <span class="n">value</span><span class="p">):</span>
-        <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
-            <span class="n">value</span> <span class="o">=</span> <span class="n">value</span><span class="o">.</span><span class="n">strip</span><span class="p">(</span><span class="s2">&quot;</span><span class="se">\&#39;\&quot;</span><span class="s2">&quot;</span><span class="p">)</span>  <span class="c1"># behavior like dict-parser, IMPORTANT FOR EVERY STRING-FAKER</span>
-        <span class="k">return</span> <span class="n">value</span></div>
-
-
 <div class="viewcode-block" id="convert_paths_in_dict_to_strings"><a class="viewcode-back" href="../../../modules/utils.html#omc3.utils.iotools.convert_paths_in_dict_to_strings">[docs]</a><span class="k">def</span> <span class="nf">convert_paths_in_dict_to_strings</span><span class="p">(</span><span class="n">dict_</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="nb">dict</span><span class="p">:</span>
 <span class="w">    </span><span class="sd">&quot;&quot;&quot;Converts all Paths in the dict to strings, including those in iterables.&quot;&quot;&quot;</span>
     <span class="n">dict_</span> <span class="o">=</span> <span class="n">dict_</span><span class="o">.</span><span class="n">copy</span><span class="p">()</span>
@@ -435,6 +431,7 @@ <h1>Source code for omc3.utils.iotools</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/utils/logging_tools.html b/_modules/omc3/utils/logging_tools.html
index 6467035db..1ba313fde 100644
--- a/_modules/omc3/utils/logging_tools.html
+++ b/_modules/omc3/utils/logging_tools.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.logging_tools</h1><div class="highlight"><pre>
@@ -624,6 +626,7 @@ <h1>Source code for omc3.utils.logging_tools</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/utils/mock.html b/_modules/omc3/utils/mock.html
index bbd5f45a6..a6d076268 100644
--- a/_modules/omc3/utils/mock.html
+++ b/_modules/omc3/utils/mock.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.mock</h1><div class="highlight"><pre>
@@ -255,6 +257,7 @@ <h1>Source code for omc3.utils.mock</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/utils/outliers.html b/_modules/omc3/utils/outliers.html
index 4ef9169e5..9d8e12d80 100644
--- a/_modules/omc3/utils/outliers.html
+++ b/_modules/omc3/utils/outliers.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.outliers</h1><div class="highlight"><pre>
@@ -331,6 +333,7 @@ <h1>Source code for omc3.utils.outliers</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/utils/stats.html b/_modules/omc3/utils/stats.html
index d6069dcf5..d1775b290 100644
--- a/_modules/omc3/utils/stats.html
+++ b/_modules/omc3/utils/stats.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.stats</h1><div class="highlight"><pre>
@@ -558,6 +560,7 @@ <h1>Source code for omc3.utils.stats</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_modules/omc3/utils/time_tools.html b/_modules/omc3/utils/time_tools.html
index 59c4602b0..88ddbef4c 100644
--- a/_modules/omc3/utils/time_tools.html
+++ b/_modules/omc3/utils/time_tools.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
   <h1>Source code for omc3.utils.time_tools</h1><div class="highlight"><pre>
@@ -426,6 +428,7 @@ <h1>Source code for omc3.utils.time_tools</h1><div class="highlight"><pre>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/_static/css/custom.css b/_static/css/custom.css
index d5c47cf69..d9ad2dfde 100644
--- a/_static/css/custom.css
+++ b/_static/css/custom.css
@@ -1,7 +1,41 @@
+:root {
+  --nav-side-width: 300px;  /* default is 300px */
+  /* for 100% width */
+  /*--nav-content-width: 100%;*/
+  /*--local-toc-width: 300px;*/
+  /*--nav-content-width-wide: calc(100% - var(--local-toc-width)); /* 100% here is fullscreen */
+  /*--local-toc-left: calc(100% - var(--local-toc-width)); /* 100% here is w/o sidebar */
+
+  /* for fixed widths */
+  --nav-content-width: 800px;  /* default is 800px */
+  --nav-content-width-wide: var(--nav-content-width);
+  --local-toc-width: calc(100% - var(--nav-content-width-wide));
+  --local-toc-left: calc(var(--nav-content-width-wide) + var(--nav-side-width));
+}
+
+/* main content width */
+.wy-nav-content {
+  max-width: var(--nav-content-width);
+}
+
+/* Sidebar width */
+.wy-nav-side {
+  width: var(--nav-side-width);
+}
+
 .wy-side-nav-search {
   background: rgb(243,244,247);
 }
 
+.wy-side-nav-search > a {
+  color: black;
+}
+
+.wy-side-nav-search> a img.logo {
+  width: 50%;
+}
+
+
 .wy-side-nav-search > div.version {
   color: black;
 }
@@ -182,3 +216,60 @@ em.sig-param span.default_value {
 .rst-content table.field-list th {
   padding: 16px;
 }
+
+
+/* Create local table of contents
+   ------------------------------
+  inspired by https://github.com/readthedocs/sphinx_rtd_theme/pull/919
+  and https://github.com/readthedocs/sphinx_rtd_theme/issues/764
+  see also _templates/layout.html
+ */
+
+#local-table-of-contents {
+  padding-bottom: 20px;
+  /* display: none; */
+}
+
+/* Mask entry of main header (chapter) */
+#local-table-of-contents a[href="#"]{
+  /*display: none;*/
+}
+
+/* indent subsections */
+#local-table-of-contents ul > ul {
+  padding-left: 0px;
+  margin-left: 20px;
+  padding-right: 0;
+  padding-bottom: 5px;
+}
+
+
+#local-table-of-contents-title {
+  margin-bottom: 10px;
+}
+
+/* Show in Sidebar if window width is larger than nav-side + nav-content + toc-width */
+@media screen and (min-width: 1200px) {
+  .wy-nav-content {
+    max-width: var(--nav-content-width-wide);
+  }
+
+  #local-table-of-contents {
+    display: block;
+    position: fixed;
+    margin-left: 15px;
+    overflow-y: auto;
+    height: 95%;
+    top: 45px;
+    left: var(--local-toc-left);
+    width: var(--local-toc-width);
+  }
+
+  #local-table-of-contents-title {
+    display: block;
+    font-size: 16px;
+    width: 100%;
+    padding-top: 10px;
+    padding-bottom: 5px;
+  }
+}
\ No newline at end of file
diff --git a/entrypoints/analysis.html b/entrypoints/analysis.html
index aeedc1fb3..a616ac525 100644
--- a/entrypoints/analysis.html
+++ b/entrypoints/analysis.html
@@ -205,6 +205,20 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Analysis</a><ul>
+<li><a class="reference internal" href="#hole-in-one">Hole in One</a></li>
+<li><a class="reference internal" href="#amplitude-detuning-analysis">Amplitude Detuning Analysis</a></li>
+<li><a class="reference internal" href="#run-kmod">Run Kmod</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="analysis">
@@ -773,6 +787,7 @@ <h2>Run Kmod<a class="headerlink" href="#run-kmod" title="Permalink to this head
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="../index.html" class="btn btn-neutral float-left" title="Welcome to omc3’s documentation!" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="correction.html" class="btn btn-neutral float-right" title="Correction" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
diff --git a/entrypoints/correction.html b/entrypoints/correction.html
index 8af5aa2d9..4281b107e 100644
--- a/entrypoints/correction.html
+++ b/entrypoints/correction.html
@@ -206,6 +206,20 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Correction</a><ul>
+<li><a class="reference internal" href="#global-correction">Global Correction</a></li>
+<li><a class="reference internal" href="#response-creator">Response Creator</a></li>
+<li><a class="reference internal" href="#correction-test">Correction Test</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="correction">
@@ -643,6 +657,7 @@ <h2>Correction Test<a class="headerlink" href="#correction-test" title="Permalin
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="analysis.html" class="btn btn-neutral float-left" title="Analysis" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="other.html" class="btn btn-neutral float-right" title="Other" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
diff --git a/entrypoints/other.html b/entrypoints/other.html
index 8c872c0bb..3d1bcb9ca 100644
--- a/entrypoints/other.html
+++ b/entrypoints/other.html
@@ -205,6 +205,21 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Other</a><ul>
+<li><a class="reference internal" href="#tbt-converter">TbT Converter</a></li>
+<li><a class="reference internal" href="#model-creator">Model Creator</a></li>
+<li><a class="reference internal" href="#knob-extractor">Knob Extractor</a></li>
+<li><a class="reference internal" href="#mad-x-wrapper">MAD-X Wrapper</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="other">
@@ -528,6 +543,7 @@ <h2>MAD-X Wrapper<a class="headerlink" href="#mad-x-wrapper" title="Permalink to
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="correction.html" class="btn btn-neutral float-left" title="Correction" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="plotting.html" class="btn btn-neutral float-right" title="Plotting" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
diff --git a/entrypoints/plotting.html b/entrypoints/plotting.html
index 4c5a678a4..06d9d45df 100644
--- a/entrypoints/plotting.html
+++ b/entrypoints/plotting.html
@@ -205,6 +205,23 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Plotting</a><ul>
+<li><a class="reference internal" href="#plot-optics-measurements">Plot Optics Measurements</a></li>
+<li><a class="reference internal" href="#plot-tfs">Plot TFS</a></li>
+<li><a class="reference internal" href="#plot-spectrum">Plot Spectrum</a></li>
+<li><a class="reference internal" href="#plot-correction-test">Plot Correction Test</a></li>
+<li><a class="reference internal" href="#plot-amplitude-detuning-results">Plot Amplitude Detuning Results</a></li>
+<li><a class="reference internal" href="#plot-bbq">Plot BBQ</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="plotting">
@@ -946,6 +963,7 @@ <h2>Plot BBQ<a class="headerlink" href="#plot-bbq" title="Permalink to this head
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="other.html" class="btn btn-neutral float-left" title="Other" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="scripts.html" class="btn btn-neutral float-right" title="Scripts" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
diff --git a/entrypoints/scripts.html b/entrypoints/scripts.html
index bfa45e93f..892c6daf5 100644
--- a/entrypoints/scripts.html
+++ b/entrypoints/scripts.html
@@ -206,6 +206,23 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Scripts</a><ul>
+<li><a class="reference internal" href="#betabeat-src-output-converter">BetaBeat.src Output Converter</a></li>
+<li><a class="reference internal" href="#merge-kmod-results">Merge KMOD Results</a></li>
+<li><a class="reference internal" href="#update-natural-tune-in-lin-files">Update Natural Tune in Lin-Files</a></li>
+<li><a class="reference internal" href="#write-mad-x-macros">Write MAD-X Macros</a></li>
+<li><a class="reference internal" href="#fake-measurement-from-model">Fake Measurement from Model</a></li>
+<li><a class="reference internal" href="#linfile-cleaning">Linfile Cleaning</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="scripts">
@@ -780,6 +797,7 @@ <h2>Linfile Cleaning<a class="headerlink" href="#linfile-cleaning" title="Permal
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="plotting.html" class="btn btn-neutral float-left" title="Plotting" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
         <a href="../modules/correction.html" class="btn btn-neutral float-right" title="Correction" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
diff --git a/environment.pickle b/environment.pickle
index 7f1b8ccff..cc41a5de7 100644
Binary files a/environment.pickle and b/environment.pickle differ
diff --git a/genindex.html b/genindex.html
index f46bafd7c..0c09caa08 100644
--- a/genindex.html
+++ b/genindex.html
@@ -201,6 +201,8 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  
+  
            <div itemprop="articleBody">
              
 
@@ -213,6 +215,7 @@ <h1 id="index">Index</h1>
 
            </div>
           </div>
+
           <footer>
 
   <hr/>
diff --git a/index.html b/index.html
index 8369f415b..673eb612a 100644
--- a/index.html
+++ b/index.html
@@ -204,6 +204,19 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Welcome to omc3’s documentation!</a></li>
+<li><a class="reference internal" href="#package-reference">Package Reference</a><ul>
+</ul>
+</li>
+<li><a class="reference internal" href="#indices-and-tables">Indices and tables</a></li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="welcome-to-omc3-s-documentation">
@@ -251,6 +264,7 @@ <h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Pe
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
         <a href="entrypoints/analysis.html" class="btn btn-neutral float-right" title="Analysis" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
     </div>
diff --git a/modules/correction.html b/modules/correction.html
index 2464ec6b1..86c2e5f4f 100644
--- a/modules/correction.html
+++ b/modules/correction.html
@@ -206,6 +206,26 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Correction</a><ul>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#filters">Filters</a></li>
+<li><a class="reference internal" href="#handler">Handler</a></li>
+<li><a class="reference internal" href="#model-appenders">Model Appenders</a></li>
+<li><a class="reference internal" href="#model-diff">Model Diff</a></li>
+<li><a class="reference internal" href="#response-mad-x">Response MAD-X</a></li>
+<li><a class="reference internal" href="#response-twiss">Response TWISS</a></li>
+<li><a class="reference internal" href="#sequence-evaluation">Sequence Evaluation</a></li>
+<li><a class="reference internal" href="#response-matrix-io">Response Matrix IO</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="correction">
@@ -633,6 +653,7 @@ <h2>Response Matrix IO<a class="headerlink" href="#response-matrix-io" title="Pe
 
            </div>
           </div>
+
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diff --git a/modules/definitions.html b/modules/definitions.html
index 0e4f591eb..7bef69d02 100644
--- a/modules/definitions.html
+++ b/modules/definitions.html
@@ -205,6 +205,19 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Definitions</a><ul>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#formats">Formats</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="definitions">
@@ -229,6 +242,7 @@ <h2>Formats<a class="headerlink" href="#formats" title="Permalink to this headin
 
            </div>
           </div>
+
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diff --git a/modules/harpy.html b/modules/harpy.html
index 875f53c37..3fce67b01 100644
--- a/modules/harpy.html
+++ b/modules/harpy.html
@@ -205,6 +205,22 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Harpy</a><ul>
+<li><a class="reference internal" href="#clean">Clean</a></li>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#frequency">Frequency</a></li>
+<li><a class="reference internal" href="#handler">Handler</a></li>
+<li><a class="reference internal" href="#kicker">Kicker</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="harpy">
@@ -449,6 +465,7 @@ <h2>Kicker<a class="headerlink" href="#kicker" title="Permalink to this heading"
 
            </div>
           </div>
+
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diff --git a/modules/kmod.html b/modules/kmod.html
index 879807ba0..3216d5a65 100644
--- a/modules/kmod.html
+++ b/modules/kmod.html
@@ -205,6 +205,20 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Kmod</a><ul>
+<li><a class="reference internal" href="#analysis">Analysis</a></li>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#helper">Helper</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="kmod">
@@ -254,6 +268,7 @@ <h2>Helper<a class="headerlink" href="#helper" title="Permalink to this heading"
 
            </div>
           </div>
+
           <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
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diff --git a/modules/model.html b/modules/model.html
index c3c4723ab..6012eddae 100644
--- a/modules/model.html
+++ b/modules/model.html
@@ -205,6 +205,31 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Model</a><ul>
+<li><a class="reference internal" href="#manager">Manager</a></li>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#accelerator">Accelerator</a></li>
+<li><a class="reference internal" href="#esrf">ESRF</a></li>
+<li><a class="reference internal" href="#lhc">LHC</a></li>
+<li><a class="reference internal" href="#ps">PS</a></li>
+<li><a class="reference internal" href="#ps-booster">PS Booster</a></li>
+<li><a class="reference internal" href="#superkekb">SuperKEKB</a></li>
+<li><a class="reference internal" href="#iota">Iota</a></li>
+<li><a class="reference internal" href="#petra">PETRA</a></li>
+<li><a class="reference internal" href="#lhc-model-creator">LHC Model Creator</a></li>
+<li><a class="reference internal" href="#ps-model-creator">PS Model Creator</a></li>
+<li><a class="reference internal" href="#ps-booster-model-creator">PS Booster Model Creator</a></li>
+<li><a class="reference internal" href="#segment-creator">Segment Creator</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="model">
@@ -1184,6 +1209,7 @@ <h2>Segment Creator<a class="headerlink" href="#segment-creator" title="Permalin
 
            </div>
           </div>
+
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index 341511e92..f7a30bfd0 100644
--- a/modules/optics_measurements.html
+++ b/modules/optics_measurements.html
@@ -205,6 +205,33 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Optics Measurements</a><ul>
+<li><a class="reference internal" href="#measure-optics">Measure Optics</a></li>
+<li><a class="reference internal" href="#beta-from-amplitude">Beta from Amplitude</a></li>
+<li><a class="reference internal" href="#beta-from-phase">Beta from Phase</a></li>
+<li><a class="reference internal" href="#chromatic">Chromatic</a></li>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#combined-rdts">Combined RDTs</a></li>
+<li><a class="reference internal" href="#data-models">Data Models</a></li>
+<li><a class="reference internal" href="#dispersion">Dispersion</a></li>
+<li><a class="reference internal" href="#dpp">Dpp</a></li>
+<li><a class="reference internal" href="#isolation-forest">Isolation Forest</a></li>
+<li><a class="reference internal" href="#interaction-point">Interaction Point</a></li>
+<li><a class="reference internal" href="#kick">Kick</a></li>
+<li><a class="reference internal" href="#phase-advance">Phase Advance</a></li>
+<li><a class="reference internal" href="#resonance-driving-terms">Resonance Driving Terms</a></li>
+<li><a class="reference internal" href="#toolbox">Toolbox</a></li>
+<li><a class="reference internal" href="#tune">Tune</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="optics-measurements">
@@ -926,6 +953,7 @@ <h2>Tune<a class="headerlink" href="#tune" title="Permalink to this heading">
 
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           </div>
+
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diff --git a/modules/plotting.html b/modules/plotting.html
index cea5013bd..854e5a7ac 100644
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+++ b/modules/plotting.html
@@ -205,6 +205,36 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Plot-Subfunctions</a><ul>
+<li><a class="reference internal" href="#optics-measurements-plots">Optics Measurements Plots</a><ul>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#utils">Utils</a></li>
+</ul>
+</li>
+<li><a class="reference internal" href="#spectrum-plots">Spectrum Plots</a><ul>
+<li><a class="reference internal" href="#plot-spectrum-stem-plotter">Plot Spectrum - Stem Plotter</a></li>
+<li><a class="reference internal" href="#plot-spectrum-waterfall-plotter">Plot Spectrum - Waterfall Plotter</a></li>
+<li><a class="reference internal" href="#plot-spectrum-utilities">Plot Spectrum - Utilities</a></li>
+</ul>
+</li>
+<li><a class="reference internal" href="#common-plot-functionality">Common Plot Functionality</a><ul>
+<li><a class="reference internal" href="#plotting-utilities-annotations">Plotting Utilities: Annotations</a></li>
+<li><a class="reference internal" href="#plotting-utilities-colors">Plotting Utilities: Colors</a></li>
+<li><a class="reference internal" href="#plotting-utilities-lines">Plotting Utilities: Lines</a></li>
+<li><a class="reference internal" href="#plotting-utilities-style">Plotting Utilities: Style</a></li>
+<li><a class="reference internal" href="#plot-window">Plot Window</a></li>
+</ul>
+</li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
            <div itemprop="articleBody">
              
   <section id="plot-subfunctions">
@@ -760,6 +790,7 @@ <h3>Plot Window<a class="headerlink" href="#plot-window" title="Permalink to thi
 
            </div>
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+
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index 93b6a325f..69a53bed7 100644
--- a/modules/tune_analysis.html
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@@ -205,6 +205,22 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Tune Analysis</a><ul>
+<li><a class="reference internal" href="#constants">Constants</a></li>
+<li><a class="reference internal" href="#bbq-tools">BBQ Tools</a></li>
+<li><a class="reference internal" href="#fitting-tools">Fitting Tools</a></li>
+<li><a class="reference internal" href="#kick-file-modifiers">Kick File Modifiers</a></li>
+<li><a class="reference internal" href="#timber-extraction">Timber Extraction</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
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   <section id="tune-analysis">
@@ -791,6 +807,7 @@ <h2>Timber Extraction<a class="headerlink" href="#timber-extraction" title="Perm
 
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+
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index 9900fe448..520be15c4 100644
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+++ b/modules/utils.html
@@ -205,6 +205,24 @@
   <hr/>
 </div>
           <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+  <nav id="local-table-of-contents" role="navigation" aria-labelledby="local-table-of-contents-title">
+    <h4 id="local-table-of-contents-title">On This Page</h4>
+    <ul>
+<li><a class="reference internal" href="#">Utils</a><ul>
+<li><a class="reference internal" href="#contexts">Contexts</a></li>
+<li><a class="reference internal" href="#io-tools">IO Tools</a></li>
+<li><a class="reference internal" href="#logging-tools">Logging Tools</a></li>
+<li><a class="reference internal" href="#mock">Mock</a></li>
+<li><a class="reference internal" href="#outliers">Outliers</a></li>
+<li><a class="reference internal" href="#stats">Stats</a></li>
+<li><a class="reference internal" href="#time-tools">Time Tools</a></li>
+</ul>
+</li>
+</ul>
+
+  </nav>
+  
+  
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   <section id="utils">
@@ -1112,6 +1130,7 @@ <h2>Time Tools<a class="headerlink" href="#time-tools" title="Permalink to this
 
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+
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index 1f5a2e40a..3c7c2881b 100644
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+++ b/search.html
@@ -203,6 +203,8 @@
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 </div>
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+  
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@@ -220,6 +222,7 @@
 
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