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vocabularies.json
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vocabularies.json
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{
"definitions": {
"$STORAGE_FORMAT": {
"type": "string",
"description": "The on-disk storage format of a data set",
"enum": [
"BDS_DIRECTORY",
"PROPRIETARY"
]
},
"GENDER": {
"type": "string",
"description": "Gender of a patient.",
"enum": [
"FEMALE",
"MALE"
]
},
"INJECT_TYPE": {
"type": "string",
"description": "Type of MC_INJECT experiment.",
"enum": [
"DIRECTED_PROTEOMICS",
"SHOTGUN_PROTEOMICS",
"TARGETED_PROTEOMICS_SIM",
"TARGETED_PROTEOMICS_SRM"
]
},
"NMR_TECHNOLOGY_TYPE": {
"type": "string",
"description": "Type of NMR technology",
"enum": [
"COSY",
"NOESY"
]
},
"Q_ANTIBODY": {
"type": "string",
"description": "List of antibodies used in different sample preparations",
"enum": [
"B1.23.2",
"BB7.2",
"GAPA3",
"L243",
"L243_TUE39",
"MAE",
"TUE39",
"W6-32"
]
},
"Q_ATTACHMENT_TYPES": {
"type": "string",
"description": "Different types of unstructured data attachments, for example results or experimental design data",
"enum": [
"INFORMATION",
"RESULT"
]
},
"Q_BMI_MODALITIES": {
"type": "string",
"description": "",
"enum": [
"CT-BIOPSY",
"CT-PERFUSION",
"MR",
"MR-ELASTOGRAPHY",
"MR-PET",
"NCIT_C16809",
"NCIT_C17369",
"NCIT_C17753",
"NCIT_C17995",
"NCIT_C18113",
"NCIT_C18216",
"NCIT_C19338",
"NCIT_C103514",
"NCIT_C116442",
"NCIT_C137909",
"PET",
"US-ELASTOGRAPHY"
]
},
"Q_CELL_HARVESTING_METHODS": {
"type": "string",
"description": "",
"enum": [
"CENTRIFUGATION",
"DEPTH_FILTRATION",
"FILTRATION",
"MICROFILTRATION"
]
},
"Q_CELL_LINES": {
"type": "string",
"description": "Vocabulary for different cell lines",
"enum": [
"1G1",
"2A1",
"2E10-H2",
"2HX-2",
"2M6",
"3T3",
"3T6",
"4H1-A7",
"7-TD-1",
"8-MG-BA",
"17.94",
"22RV1",
"32D",
"42-MG-BA",
"72A1",
"232A4",
"293",
"293T",
"380",
"639-V",
"647-V",
"697",
"1618-K",
"5637",
"7926",
"8305C",
"8505C",
"8709",
"23132_87",
"A4-840",
"A4-951",
"A4-1025",
"A4-1077",
"A-2",
"A-10",
"A-204",
"A-427",
"A-431",
"A-498",
"A-549",
"A-S-30D",
"AC-1M32",
"AC-1M46",
"AC-1M59",
"AC-1M81",
"AC-1M88",
"ACH1P",
"ALL-SIL",
"AM-C6SC8",
"AML-193",
"AMO-1",
"AN3-CA",
"AP-1060",
"ARH-77",
"B9",
"B95-8",
"B-16V",
"B-CPAP",
"BA-D5",
"BA-F8",
"BAG-12G2",
"BAG-85D10",
"BALL-1",
"BA_F3",
"BC3H1",
"BC-1",
"BC-2",
"BC-3",
"BC-3C",
"BCBL-1",
"BD-215",
"BE-13",
"BEN",
"BEN-MEN-1",
"BETA-TC-3",
"BEWO",
"BF-32",
"BF-34",
"BF-45",
"BF-F3",
"BF-G6",
"BFTC-905",
"BFTC-909",
"BHK-21",
"BHT-101",
"BHY",
"BJAB",
"BL-2",
"BL-41",
"BL-70",
"BL-100",
"BLUE-1",
"BM-1604",
"BONNA-12",
"BPH-1",
"BT-474",
"BT-B",
"BTI-EAA",
"BV-173",
"BXPC-3",
"C2C12",
"C6",
"C6-BU-1",
"C7",
"C-433",
"CA-46",
"CACO-2",
"CADO-ES1",
"CAKI-1",
"CAKI-2",
"CAL-12T",
"CAL-27",
"CAL-29",
"CAL-33",
"CAL-39",
"CAL-51",
"CAL-54",
"CAL-62",
"CAL-72",
"CAL-78",
"CAL-85-1",
"CAL-120",
"CAL-148",
"CALU-6",
"CAPAN-1",
"CAPAN-2",
"CARNAVAL",
"CAT-13.0B10",
"CAT-13.1E10",
"CAT-13.9C1",
"CCRF-CEM",
"CF-1D12",
"CF-10H5",
"CGTH-W-1",
"CHO-DHFR_-_",
"CHO-K1",
"CHP-126",
"CHP-134",
"CI",
"CI-1",
"CII",
"CL-11",
"CL-14",
"CL-34",
"CL-38",
"CL-40",
"CL-44",
"CL-49IV",
"CL-50IIA",
"CMK",
"CML-T1",
"COLO-206F",
"COLO-320",
"COLO-677",
"COLO-678",
"COLO-679",
"COLO-680N",
"COLO-699",
"COLO-704",
"COLO-720L",
"COLO-783",
"COLO-800",
"COLO-818",
"COLO-824",
"COLO-849",
"COS-1",
"COS-7",
"CPC-N",
"CRO-AP2",
"CRO-AP3",
"CRO-AP5",
"CRO-AP6",
"CTV-1",
"CX-1",
"D3",
"D10.G4.1",
"D-11",
"D-36",
"DA-1",
"DAN-G",
"DAUDI",
"DB",
"DBTRG-05MG",
"DEL",
"DERL-2",
"DERL-7",
"DG-75",
"DK-MG",
"DLD-1",
"DM-3",
"DMBM-2",
"DND-39",
"DND-41",
"DOGKIT",
"DOGUM",
"DOHH-2",
"DT-40",
"DU-145",
"DU-4475",
"DV-90",
"EB-1",
"EBL",
"ECV-304",
"EFE-184",
"EFM-19",
"EFM-192A",
"EFM-192B",
"EFM-192C",
"EFO-21",
"EFO-27",
"EGI-1",
"EHEB",
"EJM",
"ELF-153",
"ELM-I-1",
"EM-2",
"EM-3",
"EN",
"EOL-1",
"EPLC-272H",
"ESO-26",
"ESO-51",
"ESS-1",
"EVSA-T",
"F1-652",
"F9",
"F-36P",
"FDCP-1",
"FDCP-MIX_CL.A4",
"FKH-1",
"FL-64",
"FL-106",
"FLK-BLV-044",
"FLO-1",
"FU-OV-1",
"GAMG",
"GCT-27",
"GDM-1",
"GF-D8",
"GH3",
"GH4-C1",
"GI-ME-N",
"GIRARDI_HEART_C2",
"GIRARDI_HEART_C7",
"GM-7373",
"GMS-10",
"GOS-3",
"GRANTA-452",
"GRANTA-519",
"GUMBUS",
"G_G",
"H25B10",
"H-209",
"H-1184",
"H-1963",
"H-2171",
"HAIR-M",
"HAL-01",
"HAP-T1",
"HB-894",
"HC-1",
"HCC-15",
"HCC-33",
"HCC-44",
"HCC-78",
"HCC-366",
"HCC-827",
"HCC-1143",
"HCC-1599",
"HCC-1937",
"HCEC-12",
"HCEC-B4G12",
"HCEC-H9C1",
"HCT-15",
"HCT-116",
"HD-MAR-2",
"HD-MB03",
"HD-MY-Z",
"HDLM-2",
"HDQ-P1",
"HEL",
"HELA",
"HELA-S3",
"HEP-3B",
"HEP-G2",
"HEPA_1-6",
"HG-3",
"HH",
"HH-16.CL.4",
"HH-16_CL.2_1",
"HKT-1097",
"HL-60",
"HN",
"HNT-34",
"HPB-ALL",
"HPD-1NR",
"HPD-2NR",
"HSB-2",
"HT",
"HT-29",
"HT-93",
"HT-1080",
"HT-1376",
"HTC-C3",
"HUP-T3",
"HUP-T4",
"I83-E95",
"I83-LCL",
"IEC-6",
"IGR-1",
"IGR-37",
"IGR-39",
"IM-9",
"IMR-32",
"IPC-298",
"IPEC-1",
"IPEC-J2",
"IPL-LD-65Y",
"J-774A.1",
"JAR",
"JEG-3",
"JEKO-1",
"JIMT-1",
"JIYOYE",
"JJN-3",
"JK-1",
"JL-1",
"JMSU-1",
"JOPACA-1",
"JOSK-I",
"JOSK-M",
"JTC-15",
"JTC-27",
"JURKAT",
"JURL-MK1",
"JURL-MK2",
"JVM-2",
"JVM-3",
"JVM-13",
"K-562",
"KASUMI-1",
"KASUMI-2",
"KASUMI-3",
"KASUMI-6",
"KB",
"KB-3-1",
"KB-V1",
"KCI-MOH1",
"KCL-22",
"KE-37",
"KELLY",
"KG-1",
"KG-1A",
"KHYG-1",
"KI-JK",
"KM-H2",
"KMOE-2",
"KMS-12-BM",
"KMS-12-PE",
"KOPN-8",
"KPL-1",
"KU-19-19",
"KU-812",
"KYAE-1",
"KYO-1",
"KYSE-30",
"KYSE-70",
"KYSE-140",
"KYSE-150",
"KYSE-180",
"KYSE-270",
"KYSE-410",
"KYSE-450",
"KYSE-510",
"KYSE-520",
"L4.5",
"L138.8A",
"L-82",
"L-363",
"L-428",
"L-540",
"L-591",
"L-929",
"L-1210",
"L-1236",
"L-5178-Y",
"LAMA-84",
"LAMA-87",
"LAN-1",
"LAN-2",
"LAN-5",
"LAN-6",
"LAT",
"LAZ-221",
"LCL-HO",
"LCL-WEI",
"LCLC-97TM1",
"LCLC-103H",
"LF-CL2A",
"LLC-PK1",
"LN-405",
"LNCAP",
"LNZ308",
"LOU-NH91",
"LOUCY",
"LOVO",
"LP-1",
"LS",
"LS-174T",
"LXF-289",
"M1",
"M3E3_C3",
"M-07E",
"MAVER-1",
"MB-1",
"MB-03",
"MB-04",
"MB-020",
"MB-021",
"MB-L2",
"MB-L11",
"MC3T3-E1",
"MC-116",
"MCF-7",
"MDA-MB-231",
"MDA-MB-453",
"MDA-MB-468",
"MDBK",
"ME-1",
"MEC-1",
"MEC-2",
"MEG-01",
"MEG-A2",
"MEGAL",
"MEL-745A_CL._DS19",
"MEL-HO",
"MEL-JUSO",
"MFE-280",
"MFE-296",
"MFE-319",
"MFM-223",
"MH1C1",
"MH-7777A",
"MHEC5-T",
"MHH-CALL-2",
"MHH-CALL-3",
"MHH-CALL-4",
"MHH-ES-1",
"MHH-NB-11",
"MHH-PREB-1",
"MHH-TALL-2",
"MIA-PACA-2",
"MINO",
"MKN-45",
"MKPL-1",
"ML-1",
"ML-2",
"MMQ",
"MN-60",
"MOLM-1",
"MOLM-6",
"MOLM-13",
"MOLM-14",
"MOLM-16",
"MOLM-20",
"MOLP-2",
"MOLP-8",
"MOLT-3",
"MOLT-4",
"MOLT-13",
"MOLT-14",
"MOLT-16",
"MOLT-17",
"MONO-MAC-1",
"MONO-MAC-6",
"MOTN-1",
"MS-5",
"MSTO-211H",
"MT-3",
"MUG-CHOR-1",
"MUTZ-2",
"MUTZ-3",
"MUTZ-5",
"MUTZ-8",
"MV4-11",
"N2-261",
"N3-36",
"N4TG3",
"N18TG2",
"NALM-1",
"NALM-6",
"NALM-16",
"NALM-19",
"NALM-20",
"NALM-21",
"NAMALWA",
"NAMALWA.CSN_70",
"NAMALWA.IPN_45",
"NAMALWA.KN2",
"NAMALWA.PNT",
"NB-4",
"NBL-S",
"NC-NC",
"NCEB-1",
"NCI-H82",
"NCI-H460",
"NCI-H510A",
"NCI-H929",
"NEURO-2A",
"NGP",
"NIH-3T3",
"NK-92",
"NMB",
"NOMO-1",
"NRK-49F",
"NRK-52E",
"NS20Y",
"NT-92",
"NTERA-2",
"NU-DHL-1",
"NU-DUL-1",
"NUC-1",
"NUC-5",
"OAC-M5.1",
"OAC-P4C",
"OCI-AML1",
"OCI-AML2",
"OCI-AML3",
"OCI-AML4",
"OCI-AML5",
"OCI-AML6",
"OCI-LY1",
"OCI-LY3",
"OCI-LY7",
"OCI-LY18",
"OCI-LY-19",
"OCI-M1",
"OCI-M2",
"OE-19",
"OE-33",
"OMEGA-E",
"ONCO-DG-1",
"OPM-2",
"OTH-74D4",
"P3_NSI_1-AG4-1",
"P12-ICHIKAWA",
"P30-OHKUBO",
"P-19",
"P-388D1_IL-1_",
"P-815",
"PA-TU-8902",
"PA-TU-8988S",
"PA-TU-8988T",
"PAB-100",
"PAB-122",
"PAB-1620",
"PACADD-119",
"PACADD-135",
"PACADD-137",
"PACADD-159",
"PACADD-161",
"PACADD-165",
"PACADD-183",
"PACADD-188",
"PB-1",
"PC-3",
"PC-12",
"PEER",
"PF-382",
"PG-EBV",
"PGA-1",
"PK-15",
"PL-21",
"PLB-985",
"PR-1",
"PSI-2",
"PYS",
"R1",
"R3327-MATLYLU",
"R-05T",
"R-06E",
"RAJI",
"RAMOS",
"RBL-1",
"RBL-2H3",
"RC-K8",
"RCH-ACV",
"RD-ES",
"REC-1",
"RED-1",
"RED-4",
"RED-5",
"RED-6",
"REH",
"RGE",
"RH-1",
"RH-18",
"RH-30",
"RH-41",
"RI-1",
"RL",
"RLC-18",
"RLD-1",
"RMB-1",
"RO",
"ROS-50",
"RPMI-2650",
"RPMI-7951",
"RPMI-8226",
"RPMI-8402",
"RS4_11",
"RS-5",
"RT-4",
"RT-112",
"RTG-2",
"RV-C2",
"RVH-421",
"S-117",
"SAOS-2",
"SBC-2",
"SBC-7",
"SC-1",
"SC-71",
"SC-75",
"SCC-4",
"SCC-25",
"SCHNEIDER-2",
"SCLC-21H",
"SCLC-22H",
"SD-1",
"SEM",
"SER-W3",
"SET-2",
"SEWA",
"SF-9",
"SF-21",
"SF-158",
"SGE-1",
"SH-2",
"SH-SY5Y",
"SHI-1",
"SIG-M5",
"SIMA",
"SISO",
"SK-BR-3",
"SK-ES-1",
"SK-GT-2",
"SK-GT-4",
"SK-HEP-1",
"SK-MEL-1",
"SK-MEL-3",
"SK-MEL-30",
"SK-MES-1",
"SK-MM-1",
"SK-MM-2",
"SK-N-BE_2_",
"SK-N-MC",
"SKM-1",
"SKNO-1",
"SKW-3",
"SNB-19",
"SOM-4D10",
"SP2_0-AG14",
"SPC-BM-36",
"SPI-801",
"SPI-802",
"SR-786",
"SR-4987",
"ST",
"ST-2",
"SU-DHL-1",
"SU-DHL-4",
"SU-DHL-5",
"SU-DHL-6",
"SU-DHL-8",
"SU-DHL-10",
"SU-DHL-16",
"SUP-B15",
"SUP-HD1",
"SUP-M2",
"SUP-T1",
"SUP-T11",
"SUSA",
"SW-403",
"SW-480",
"SW-948",
"SW-1710",
"T2",
"T-24",
"T-47D",
"TA-85B5",
"TALL-1",
"TANOUE",
"TC-71",
"TCC-SUP",
"TE-671",
"TF-1",
"TFK-1",
"THB-5",
"THP-1",
"TI-1",
"TI-4",
"TK-6",
"TMM",
"TN-368",
"TOM-1",
"TT2609-C02",
"U-138-MG",
"U-266",
"U-698-M",
"U-937",
"U-2197",
"U-2904",
"U-2932",
"U-2940",
"U-2973",
"U-CH1",
"U-CH2",
"U-HO1",
"UCSD-AML1",
"ULA",
"UOC-M1",
"UPCI-SCC-026",
"UPCI-SCC-029A",
"UPCI-SCC-040",
"UPCI-SCC-072",
"UPCI-SCC-074",
"UPCI-SCC-090",
"UPCI-SCC-099",
"UPCI-SCC-111",
"UPCI-SCC-114",
"UPCI-SCC-116",
"UPCI-SCC-131",
"UPCI-SCC-154",
"UPCI-SCC-172",
"UPCI-SCC-200",
"UT-7",
"V-79",
"VA-ES-BJ",
"VAL",
"VERO-B4",
"VIP-VIIIC8",
"VLM",
"VM-CUB1",
"WA-C3CD5_PLUS",
"WA-OSEL",
"WEHI-3B",
"WEHI-164S",
"WERI-RB-1",
"WILL-1",
"WILL-2",
"WMP-2",
"WSU-DLCL2",
"WSU-FSCCL",
"WSU-NHL",
"X63AG8.653",
"XC",
"XTH-2",
"Y-79",
"YAC-1",
"YAPC",
"YNH-1",
"YT"
]
},
"Q_CELL_LYSIS_TYPES": {
"type": "string",
"description": "methods used for cells lysis",
"enum": [
"BOILING",
"CHEMICALLY",
"ENZYMATIC_DIGESTION",
"FREEZE_AND_THAW",
"FREEZING",
"FRENCH_PRESS",
"GLASS_BEADS",
"OTHER",
"PRESSURE_CELL",
"SONIFICATION"
]
},
"Q_CHROMATOGRAPHY_TYPES": {
"type": "string",
"description": "A list of chromatography-based separation techniques.",
"enum": [
"AEX",
"CE",
"CEX",
"DC",
"DIRECT_INFUSION",
"HIC",
"HILIC",
"IMAC",
"NPC",
"PARTITION_CHROMATOGRAPHY",
"PEPMAP_RP_C18",
"RPC",
"RP_HPLC_C18_COLUMN",
"RP_UPLC_C18_COLUMN",
"SDBC",
"SDC",
"UPAC_RP_C18",
"WCX"
]
},
"Q_CULTURE_MEDIA": {
"type": "string",
"description": "Different Media for cell cultures etc.",
"enum": [
"LB_AGAR",
"LB_LIQUID",
"M9_AGAR",
"M9_LIQUID",
"MH_AGAR",
"MH_LIQUID",
"TSA"
]
},
"Q_DEMUX_SOFTWARES": {
"type": "string",
"description": "A list of demultiplexing software solutions and versions.",
"enum": [
"ILLUMINA_CASAVA_1_8_2"
]
},
"Q_DIGESTION_METHODS": {
"type": "string",
"description": "",
"enum": [
"IN_GEL",
"IN_SOLUTION",
"ON_BEADS"
]
},
"Q_DIGESTION_PROTEASES": {
"type": "string",
"description": "Common proteases or other chemicals used to digest proteins into peptides. Used in MS experiments.",
"enum": [
"ARG-C_PROTEINASE",
"ASP-N_ENDOPEPTIDASE",
"ASP-N_ENDOPEPTIDASE_AND_N-TERMINAL_GLU",
"BNPS-SKATOLE",
"CASPASE1",
"CASPASE2",
"CASPASE3",
"CASPASE4",
"CASPASE5",
"CASPASE6",
"CASPASE7",
"CASPASE8",
"CASPASE9",
"CASPASE10",
"CHYMOTRYPSIN",
"CHYMOTRYPSIN_HIGH_SPECIFICITY",
"CHYMOTRYPSIN_LOW_SPECIFICITY",
"CLOSTRIPAIN:CLOSTRIDIOPEPTIDASE_B",
"CNBR",
"ENTEROKINASE",
"FACTOR_XA",
"FORMIC_ACID",
"GLUTAMYL_ENDOPEPTIDASE",
"GRANZYMEB",
"HYDROXYLAMINE",
"IDES",
"IDEZ",
"IGDE",
"IODOSOBENZOIC_ACID",
"LYSC",
"LYSN",
"NEUTROPHIL_ELASTASE",
"NTCB",
"PAPAIN",
"PEPSIN_HIGH_PH",
"PEPSIN_LOW_PH",
"PNGASE_F",
"PROLINE-ENDOPEPTIDASE",
"PROTEINASE_K",
"STAPHYLOCOCCAL_PEPTIDASE_I",
"THERMOLYSIN",
"THROMBIN",
"TOBACCO_ETCH_VIRUS_PROTEASE",
"TRYPSIN"
]
},
"Q_EXPERIMENT_STATES": {
"type": "string",
"description": "Describes the current status of the experiment's progress.",
"enum": [
"DELAYED",
"FAILED",
"FINISHED",
"STARTED"
]
},
"Q_HLA_CLASSES": {
"type": "string",
"description": "Exisiting HLA classes",
"enum": [
"MHC_CLASS_I",
"MHC_CLASS_II"
]
},
"Q_HLA_TYPING_METHODS": {
"type": "string",
"description": "Available experimental HLA Typing methods.",