AMPLICON tests

Author: antgonza

qiita_db/metadata_template/test/test_prep_template.py

@@ -911,7 +911,7 @@ def _common_creation_checks(self, pt, fp_count, name):
         self.assertEqual(pt.data_type(), self.data_type)
         self.assertEqual(pt.data_type(ret_id=True), self.data_type_id)
         self.assertEqual(pt.artifact, None)
-        self.assertEqual(pt.investigation_type, 'Amplicon')
+        self.assertEqual(pt.investigation_type, 'AMPLICON')
         self.assertEqual(pt.study_id, self.test_study.id)
         self.assertEqual(pt.status, "sandbox")
         exp_sample_ids = {'%s.SKB8.640193' % self.test_study.id,
@@ -1076,7 +1076,7 @@ def test_create_warning(self):
         self.assertEqual(pt.data_type(), self.data_type)
         self.assertEqual(pt.data_type(ret_id=True), self.data_type_id)
         self.assertEqual(pt.artifact, None)
-        self.assertEqual(pt.investigation_type, 'Amplicon')
+        self.assertEqual(pt.investigation_type, 'AMPLICON')
         self.assertEqual(pt.study_id, self.test_study.id)
         self.assertEqual(pt.status, 'sandbox')
         exp_sample_ids = {'%s.SKB8.640193' % self.test_study.id,
@@ -1247,7 +1247,7 @@ def test_investigation_type_setter(self):
         """Able to update the investigation type"""
         pt = qdb.metadata_template.prep_template.PrepTemplate.create(
             self.metadata, self.test_study, self.data_type_id)
-        self.assertEqual(pt.investigation_type, 'Amplicon')
+        self.assertEqual(pt.investigation_type, 'AMPLICON')
         pt.investigation_type = "Other"
         self.assertEqual(pt.investigation_type, 'Other')
         with self.assertRaises(qdb.exceptions.QiitaDBColumnError):

qiita_db/test/test_ontology.py

@@ -35,7 +35,7 @@ def testShortNameProperty(self):
     def testTerms(self):
         obs = self.ontology.terms
         self.assertEqual(
-            obs, ['WGS', 'Metagenomics', 'Amplicon', 'RNA-Seq', 'Other'])
+            obs, ['WGS', 'Metagenomics', 'AMPLICON', 'RNA-Seq', 'Other'])
 
     def test_user_defined_terms(self):
         obs = self.ontology.user_defined_terms

qiita_pet/handlers/api_proxy/tests/test_prep_template.py

@@ -38,7 +38,7 @@ class TestPrepAPIReadOnly(TestCase):
     def test_get_ENA_ontology(self):
         obs = _get_ENA_ontology()
         exp = {
-            'ENA': ['Amplicon', 'Metagenomics', 'RNA-Seq', 'WGS', 'Other'],
+            'ENA': ['AMPLICON', 'Metagenomics', 'RNA-Seq', 'WGS', 'Other'],
             'User': []}
         self.assertEqual(obs, exp)
 
@@ -53,7 +53,7 @@ def test_new_prep_template_get_req(self):
                            'Multiomic', 'Proteomic', 'Transcriptomics',
                            'Viromics'],
             'ontology': {
-                'ENA': ['Amplicon', 'Metagenomics', 'RNA-Seq', 'WGS', 'Other'],
+                'ENA': ['AMPLICON', 'Metagenomics', 'RNA-Seq', 'WGS', 'Other'],
                 'User': []}}
 
         self.assertEqual(obs, exp)
@@ -73,7 +73,7 @@ def test_prep_template_ajax_get_req(self):
                'num_columns': 22,
                'investigation_type': 'Metagenomics',
                'ontology': {
-                   'ENA': ['Amplicon', 'Metagenomics', 'RNA-Seq', 'WGS',
+                   'ENA': ['AMPLICON', 'Metagenomics', 'RNA-Seq', 'WGS',
                            'Other'],
                    'User': []},
                'artifact_attached': True,