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mv 150629_SN1001_0511_AH5L7GBCXX -> 150629_K1001_0511_AH5L7GBCXX
1 parent ef0c466 commit 6706e2e

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8 files changed

+20
-17
lines changed

8 files changed

+20
-17
lines changed

‎tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RTAComplete.txt‎ renamed to ‎tests/data/sample_run_directories/150629_K1001_0511_AH5L7GBCXX/RTAComplete.txt‎

File renamed without changes.

‎tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/RunInfo.xml‎ renamed to ‎tests/data/sample_run_directories/150629_K1001_0511_AH5L7GBCXX/RunInfo.xml‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
11
<?xml version="1.0"?>
22
<RunInfo xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" Version="2">
3-
<Run Id="150629_SN1001_0511_AH5L7GBCXX" Number="511">
3+
<Run Id="150629_K1001_0511_AH5L7GBCXX" Number="511">
44
<Flowcell>H5L7GBCXX</Flowcell>
5-
<Instrument>SN1001</Instrument>
5+
<Instrument>K1001</Instrument>
66
<Date>150629</Date>
77
<Reads>
88
<Read Number="1" NumCycles="151" IsIndexedRead="N" />
@@ -15,4 +15,4 @@
1515
<Lane>2</Lane>
1616
</AlignToPhiX>
1717
</Run>
18-
</RunInfo>
18+
</RunInfo>

‎tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX/runParameters.xml‎ renamed to ‎tests/data/sample_run_directories/150629_K1001_0511_AH5L7GBCXX/runParameters.xml‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -33,7 +33,7 @@
3333
<ServiceRun>false</ServiceRun>
3434
<ApplicationName>HiSeq Control Software</ApplicationName>
3535
<ApplicationVersion>2.2.58</ApplicationVersion>
36-
<RunID>150629_SN1001_0511_AH5L7GBCXX</RunID>
36+
<RunID>150629_K1001_0511_AH5L7GBCXX</RunID>
3737
<RunStartDate>150629</RunStartDate>
3838
<IntegrationMode>Standalone</IntegrationMode>
3939
<BaseSpaceSettings>
@@ -44,7 +44,7 @@
4444
<RunMonitoringOnly>false</RunMonitoringOnly>
4545
<PlannedRun>false</PlannedRun>
4646
</BaseSpaceSettings>
47-
<ScannerID>SN1001</ScannerID>
47+
<ScannerID>K1001</ScannerID>
4848
<ScanNumber>511</ScanNumber>
4949
<ComputerName>DGZN8DQ1</ComputerName>
5050
<FPGAVersion>3.10.3</FPGAVersion>
@@ -131,11 +131,11 @@
131131
<Resume>false</Resume>
132132
<ResumeCycle>0</ResumeCycle>
133133
<SupportMultipleSurfacesInUI>true</SupportMultipleSurfacesInUI>
134-
<TempFolder>D:\Illumina\HiSeqTemp\150629_SN1001_0511_AH5L7GBCXX</TempFolder>
134+
<TempFolder>D:\Illumina\HiSeqTemp\150629_K1001_0511_AH5L7GBCXX</TempFolder>
135135
<RecipeFragmentVersion>1.5.21.0</RecipeFragmentVersion>
136136
<PromptForPeReagents>false</PromptForPeReagents>
137137
<MockRun>false</MockRun>
138138
<ScannedBarcode />
139139
</Setup>
140140
<Version>1</Version>
141-
</RunParameters>
141+
</RunParameters>

‎tests/data/tellseq_output/tellread_test.sbatch‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,7 @@ set -x
1313

1414
module load singularity_3.6.4
1515
$HOME/qiita-spots/tellread-release-novaseqX/run_tellread_sing.sh \
16-
-i tests/data/sample_run_directories/150629_SN1001_0511_AH5L7GBCXX \
16+
-i tests/data/sample_run_directories/150629_K1001_0511_AH5L7GBCXX \
1717
-o tests/2caa8226-cf69-45a3-bd40-1e90ec3d18d0/TellReadJob \
1818
-s $(echo C501,C509,C502,C510,C503,C511,C504,C512,C505,C513,C506,C514,C507,C515,C508,C516,C517,C525,C518,C526,C519,C527,C520,C528,C521,C529,C522,C530,C523,C531,C524,C532,C533,C541,C534,C542,C535,C543,C536,C544,C537,C545,C538,C546,C539,C547,C540,C548,C549,C557,C550,C558,C551,C559,C552,C560,C553,C561,C554,C562,C555,C563,C556,C564,C565,C573,C566,C574,C567,C575,C568,C576,C569,C577,C570,C578,C571,C579,C572,C580,C581,C589,C582,C590,C583,C591,C584,C592,C585,C593,C586,C594,C587,C595,C588,C596 | tr -d '"') \
1919
-g $(echo NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE,NONE | tr -d '"') \

‎tests/test_Pipeline.py‎

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2408,7 +2408,10 @@ def test_instrument_utils(self):
24082408
'date': '2019-08-09'},
24092409
'231215_A01535_0435_BH23F5DSXC': {'id': 'A01535',
24102410
'type': 'NovaSeq 6000',
2411-
'date': '2023-12-15'}}
2411+
'date': '2023-12-15'},
2412+
'150629_K1001_0511_AH5L7GBCXX': {'id': 'K1001',
2413+
'type': 'HiSeq 4000',
2414+
'date': '2015-06-29'}}
24122415

24132416
run_directories = []
24142417
for root, dirs, files in walk(self.path('sample_run_directories')):

‎tests/test_SeqCountsJob.py‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -13,10 +13,10 @@ def setUp(self):
1313
# where 2caa8226-cf69-45a3-bd40-1e90ec3d18d0 is a random qiita job id.
1414
self.exp = self.path('data', 'tellseq_output', 'integrate_test.sbatch')
1515

16-
# where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already
16+
# where 150629_K1001_0511_AH5L7GBCXX is a run-directory that already
1717
# exists.
1818
self.run_dir = self.path('data', 'sample_run_directories',
19-
'150629_SN1001_0511_AH5L7GBCXX')
19+
'150629_K1001_0511_AH5L7GBCXX')
2020

2121
self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0')
2222

‎tests/test_TRIntegrateJob.py‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -13,10 +13,10 @@ def setUp(self):
1313
'TRIntegrateJob', 'integrate_test.sbatch')
1414
self.exp = self.path('data', 'tellseq_output', 'integrate_test.sbatch')
1515

16-
# where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already
16+
# where 150629_K1001_0511_AH5L7GBCXX is a run-directory that already
1717
# exists.
1818
self.run_dir = self.path('data', 'sample_run_directories',
19-
'150629_SN1001_0511_AH5L7GBCXX')
19+
'150629_K1001_0511_AH5L7GBCXX')
2020

2121
self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0')
2222

@@ -30,7 +30,7 @@ def setUp(self):
3030
self.jmem = "16"
3131
self.modules_to_load = ["singularity_3.6.4"]
3232
self.qiita_job_id = "2caa8226-cf69-45a3-bd40-1e90ec3d18d0"
33-
self.label = "150629_SN1001_0511_AH5L7GBCXX-test"
33+
self.label = "150629_K1001_0511_AH5L7GBCXX-test"
3434
self.reference_base = ""
3535
self.reference_map = ""
3636
self.tmp1_path = join(self.output_path, "TRIntegrateJob", "output",

‎tests/test_TellReadJob.py‎

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -13,10 +13,10 @@ def setUp(self):
1313
'TellReadJob', 'tellread_test.sbatch')
1414
self.exp = self.path('data', 'tellseq_output', 'tellread_test.sbatch')
1515

16-
# where 150629_SN1001_0511_AH5L7GBCXX is a run-directory that already
16+
# where 150629_K1001_0511_AH5L7GBCXX is a run-directory that already
1717
# exists.
1818
self.run_dir = self.path('data', 'sample_run_directories',
19-
'150629_SN1001_0511_AH5L7GBCXX')
19+
'150629_K1001_0511_AH5L7GBCXX')
2020

2121
self.output_path = self.path('2caa8226-cf69-45a3-bd40-1e90ec3d18d0')
2222

@@ -30,7 +30,7 @@ def setUp(self):
3030
self.jmem = "16"
3131
self.modules_to_load = ["singularity_3.6.4"]
3232
self.qiita_job_id = "2caa8226-cf69-45a3-bd40-1e90ec3d18d0"
33-
self.label = "150629_SN1001_0511_AH5L7GBCXX-test"
33+
self.label = "150629_K1001_0511_AH5L7GBCXX-test"
3434
self.reference_base = ""
3535
self.reference_map = ""
3636
self.tmp1_path = join(self.output_path, "TellReadJob", "output",

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