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fix TestPipeline.test_generate_sample_information_files
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tests/test_Pipeline.py

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -400,7 +400,7 @@ def test_generate_sample_information_files(self):
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exp_first_lines = {
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f'{self.good_run_id}_StudyA_13059_blanks.tsv':
403-
'BLANK1.1A\t2021-10-21\t193\t'
403+
'BLANK1.1A\t2017-05-23\t193\t'
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'Control\tNegative\tSterile w'
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'ater blank\tSterile water blank\turban biome\tres'
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'earch facility\tsterile wate'
@@ -411,15 +411,15 @@ def test_generate_sample_information_files(self):
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'StudyA\tTRUE\t'
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'UCSD\tFALSE',
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f'{self.good_run_id}_StudyB_11661_blanks.tsv':
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'BLANK.40.12G\t2021-10-21\t193\tControl'
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'BLANK.40.12G\t2017-05-23\t193\tControl'
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'\tNegative\tSterile water blank\tSterile water blank\turban '
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'biome\tresearch facility\tsterile water'
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'\tmisc environment\tUSA:CA:San Diego\tB'
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'LANK.40.12G\t32.5\t-117.25\tcontrol bla'
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'nk\tmetagenome\t256318\tBLANK.40.12G\t'
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'StudyB\tTRUE\tUCSD\tFALSE',
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f'{self.good_run_id}_StudyC_6123_blanks.tsv':
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'BLANK.41.12G\t2021-10-21\t193\tControl'
422+
'BLANK.41.12G\t2017-05-23\t193\tControl'
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'\tNegative\tSterile water blank\tSterile water blank\turban'
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' biome\tresearch facility\tsterile wat'
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'er\tmisc environment\tUSA:CA:San Diego'
@@ -430,7 +430,7 @@ def test_generate_sample_information_files(self):
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exp_last_lines = {
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f'{self.good_run_id}_StudyA_13059_blanks.tsv':
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'BLANK4.4H\t2021-10-21\t193\t'
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'BLANK4.4H\t2017-05-23\t193\t'
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'Control\tNegative\tSterile w'
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'ater blank\tSterile water blank\turban biome\tres'
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'earch facility\tsterile wate'
@@ -441,15 +441,15 @@ def test_generate_sample_information_files(self):
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'StudyA\tTRUE\t'
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'UCSD\tFALSE',
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f'{self.good_run_id}_StudyB_11661_blanks.tsv':
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'BLANK.43.12H\t2021-10-21\t193\tControl'
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'BLANK.43.12H\t2017-05-23\t193\tControl'
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'\tNegative\tSterile water blank\tSterile water blank\turban'
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' biome\tresearch facility\tsterile wat'
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'er\tmisc environment\tUSA:CA:San Diego'
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'\tBLANK.43.12H\t32.5\t-117.25\tcontrol'
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' blank\tmetagenome\t256318\tBLANK.43.1'
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'2H\tStudyB\tTRUE\tUCSD\tFALSE',
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f'{self.good_run_id}_StudyC_6123_blanks.tsv':
452-
'BLANK.41.12G\t2021-10-21\t193\tContro'
452+
'BLANK.41.12G\t2017-05-23\t193\tContro'
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'l\tNegative\tSterile water blank\tSterile water blank\turb'
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'an biome\tresearch facility\tsterile '
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'water\tmisc environment\tUSA:CA:San D'

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