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_pkgdown.yml
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_pkgdown.yml
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template:
params:
bootswatch: flatly
reference:
- title: Workflow steps
- subtitle: Casting boundaries
desc: Create a spatial boundaries object for your model
- contents:
- spm_as_boundary
- sspm_boundary-class
- subtitle: Discretizing boundaries
desc: Discretize your spatial boundaries object into patches
- contents:
- spm_discretize
- sspm_discrete_boundary-class
- tesselate_voronoi
- triangulate_delaunay
- spm_methods
- as_discretization_method
- discretization_method-class
- subtitle: Casting datasets
desc: Create dataset objects for your raw variables
- contents:
- spm_as_dataset
- sspm_dataset-class
- subtitle: Smoothing biomass
desc: Smooth the raw variables using gams
- contents:
- spm_smooth
- spm_smooth_methods
- smooth_time
- smooth_space
- smooth_space_time
- subtitle: Aggregating catch
desc: Aggregate the catch data according to discretized boundaries
- contents:
- spm_aggregate_catch
- spm_aggregate
- subtitle: Assembling and modifiying SSPM objects
desc: Assemble the model object and prepare it for fitting
- contents:
- sspm
- sspm-class
- spm_split
- spm_lag
- subtitle: Fitting the surplus production model
desc: Fit the model
- contents:
- spm
- sspm_fit-class
- sspm_formula-class
- summary
- subtitle: Predict and plot
desc: Predict and plot results
- contents:
- predict
- predict_intervals
- plot
- title: Datasets
desc: Datasets used in the vignette
- contents:
- borealis_simulated
- catch_simulated
- predator_simulated
- sfa_boundaries
- title: Accessors
desc: Accessors method for various objects
- contents:
- starts_with("spm_boundaries")
- starts_with("sspm_boundary")
- extract
- spm_data
- spm_unique_ID
- raw_formula
- method_func