up

git-svn-id: https://svn.r-project.org/R-dev-web/trunk@6565 c52295ea-58df-0310-926a-d16021944841

Author: ripley

CRAN/QA/BDR/gannet/.R/Makevars.UBSAN

@@ -1,4 +1,4 @@
-CC=/usr/local/clang20/bin/clang -fsanitize=undefined -fno-sanitize=function -fno-omit-frame-pointer
+CC=/usr/local/clang20/bin/clang -std=gnu23 -fsanitize=undefined -fno-sanitize=function -fno-omit-frame-pointer
 CXX=/usr/local/clang20/bin/clang++ -fsanitize=undefined -fno-sanitize=function -fno-omit-frame-pointer -frtti
 CFLAGS=-g -O3 -Wall -pedantic -Wp,-D_FORTIFY_SOURCE=3
 CXXFLAGS=-g -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3

CRAN/QA/BDR/gannet/packages/Makefile.common

@@ -35,7 +35,7 @@ fitbitScraper-OPTS = --no-vignettes
 BMTME-OPTS = --no-tests
 
 ## uses excessive memory
-hutilscpp-OPTS = --no-tests
+#hutilscpp-OPTS = --no-tests
 
 ## need gputools
 gcbd-OPTS = --no-vignettes

CRAN/QA/BDR/gannet/packages/Makefile.parallel

@@ -70,6 +70,7 @@ cbq-VARS = MAKE=make MAKEFLAGS=
 cgalMeshes-VARS = MAKE=make MAKEFLAGS=
 cloneRate-VARS = MAKE=make MAKEFLAGS=
 coconots-VARS = MAKE=make MAKEFLAGS=
+commonmark-VARS = MAKE=make MAKEFLAGS=
 conStruct-VARS = MAKE=make MAKEFLAGS=
 ctsem-VARS = MAKE=make MAKEFLAGS=
 densEstBayes-VARS = MAKE=make MAKEFLAGS=

CRAN/QA/BDR/gannet/packages/common.csh

@@ -1,5 +1,5 @@
 setenv DISPLAY :5
-limit cputime 60m
+limit cputime 90m
 limit stacksize 20M
 setenv OMP_THREAD_LIMIT 2
 #setenv R_MAX_VSIZE 17000000000

CRAN/QA/BDR/gannet/packages/known

@@ -1,58 +1,30 @@
-CAESAR.Suite
-DataFakeR
-PLNmodels
-PublicWorksFinanceIT
 RAMClustR
-RITCH
-RMSD
-TestGenerator
-btergm
+VicmapR
+bazar
+cardx
 cbcTools
-clock
+crunchy
 distillML
 divvy
 easycsv
-enmSdmX
-epidatr
-fastcpd
-happign
-hilldiv
-manydata
-massiveGST
-miWQS
-miesmuschel
-nestedmodels
-rkriging
-rmzqc
+hdpGLM
+rbiom
+rlang
 sgat
-shiny.info
 skellam
 smooth
 spqdep
-vein
+tabnet
+tidystats
 
-ecb
 hacksig
-noegletalR
 
 DataCombine
-R2BayesX
 Rcrawler
-disprofas
 hacksaw
-manymodelr
-mgm
-officedown
 opendatatoronto
-qdapRegex
-unitizer
 
-centr
-eudract
 imagefluency
-rim
 spcosa
-syrup
-unitizer
 
 

CRAN/QA/BDR/gannet/packages/stoplist2

@@ -6,22 +6,31 @@ spacetime
 urbin
 
 ## temporary
-CAESAR.Suite
+#CAESAR.Suite
+CytOpT
 GeoTox
 PublicWorksFinanceIT
 RMSD
+VirtualPop
 abn
 bayesPop
+cardx
 cbcTools
 clustTMB
-disprofas
-fastcpd
+#disprofas
+#fastcpd
+glmmTMB
+gmwmx2
+hacksig
 happign
-hutilscpp
-officedown
+innsight
+#officedown
 paws.analytics
 pbdMPI
+proteus
+renv
 rmzqc
+simTool
 smooth
 spqdep
 tabr
@@ -48,7 +57,10 @@ syrup
 telefit
 
 ## web
-ecb
+#ecb
+ncaavolleyballr
+pcatsAPIclientR
+wikiTools
 
 ## Crashpad
 SITH

CRAN/QA/BDR/gannet/packages/tests-clang-ASAN/Makefile

@@ -32,7 +32,7 @@ check: $(OUTS)
 
 backup:
 	@mkdir -p ../tests-clang-ASAN-keep
-	@-cp -p Makefile pkgdiff RunScript process.R process2.R unpack.R *.log *.out ../tests-clang-ASAN-keep
+	@-cp -p Makefile PkgDiff RunScript process.R process2.R unpack.R *.log *.out ../tests-clang-ASAN-keep
 
 process:
 	@/data/gannet/ripley/R/R-devel/bin/Rscript process.R

CRAN/QA/BDR/gannet/packages/tests-clang-ASAN/pkgdiff CRAN/QA/BDR/gannet/packages/tests-clang-ASAN/PkgDiff

@@ -31,7 +31,7 @@ check: $(OUTS)
 
 backup:
 	@mkdir -p ../tests-clang-UBSAN-keep
-	@-cp -p Makefile pkgdiff RunScript process.R process2.R unpack.R *.log *.out ../tests-clang-UBSAN-keep
+	@-cp -p Makefile PkgDiff RunScript process.R process2.R unpack.R *.log *.out ../tests-clang-UBSAN-keep
 
 process:
 	@/data/gannet/ripley/R/R-devel/bin/Rscript process.R

CRAN/QA/BDR/gannet/packages/tests-clang-UBSAN/Makefile

@@ -6,7 +6,7 @@ for(type in c("UBSAN")) {
     bpath <- paste0("/data/ftp/pub/bdr/memtests/clang-", type)
     Packages <- list.dirs(bpath, FALSE, FALSE)
     Av <- Packages[Packages %in% av]
-    Av <- setdiff(Av, c("MPCR"))
+#    Av <- setdiff(Av, c("MPCR"))
     unlink(file.path(bpath, Av), recursive = TRUE)
 }