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ChangeLog
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2020-03-07 Greg Warnes <[email protected]>
* : commit ce1c33878589e8037fa7ee843ab362798c80dd3d Author: Greg
Warnes <[email protected]> Date: Sat Mar 7 21:36:39 2020 -0500
2020-03-07 Greg Warnes <[email protected]>
* R/all.is.numeric.R, R/in.operator.R: Use `%nin%` from Hmisc
library instead of a local copy.
2020-03-06 Greg Warnes <[email protected]>
* DESCRIPTION, NAMESPACE: Bump version number.
2020-03-06 Greg Warnes <[email protected]>
* NAMESPACE, R/{in.opererator.R => in.operator.R}: Fix misspelled
file name, and export not-in operator ("%nin%")
2020-03-06 Greg Warnes <[email protected]>
* README.md, inst/ChangeLog, inst/NEWS.md, man/Alfalfa.Rd,
man/SASformat.Rd, man/SASxport-package.Rd, man/makeSASNames.Rd,
man/read.xport.Rd, man/write.xport.Rd: Fix spelling errors.
2020-03-06 Greg Warnes <[email protected]>
* R/lookup.xport.R: Use `unique` instead of `levels` to avoid issues
with the possibility that data frame values may be strings instead
of factors.
2020-03-06 Greg Warnes <[email protected]>
* DESCRIPTION, R/lookup.xport.R, R/make.formats.R,
man/SASformat.Rd, man/reexports.Rd, man/write.xport.Rd,
tests/Alfalfa_Test.Rout.save, tests/Theoph.Rout.save, tests/cars.R,
tests/cars.Rout.save, tests/dfAttributes.R, tests/testDates.R,
tests/testDates.Rout.save, tests/testDuplicateNames.Rout.save,
tests/testEmpty.Rout.save, tests/testExamples.Rout.save,
tests/testManyNames.Rout.save, tests/testNegative.R,
tests/testNegative.Rout.save, tests/testNumeric.R,
tests/testNumeric.Rout.save, tests/testUnnamedComponents.Rout.save,
tests/test_as_is.Rout.save, tests/test_fields.Rout.save,
tests/xport.Rout.save, tests/xxx.Rout.save: Explicitly set
stringsAsFactor for all `read.table`, `data.frame` and similar calls
due to an upcoming change in R 4.0.0 that switches the default
behavior to `stringsAsFactor=FALSE`.
2018-02-26 Gregory R. Warnes <[email protected]>
* : Merge pull request #7 from warnes/devel Modify write.xport to remove 8 character minimum length for string
variables
2018-02-23 Gregory R. Warnes <[email protected]>
* appveyor.yml: - Test on current, previous, and development R versions. - Sevelopment version needs to install packages from source. - Stop all builds as soon as one fails.
2018-02-23 Gregory R. Warnes <[email protected]>
* README.md: Show build status for the branch being displayed.
2018-02-23 Gregory R. Warnes <[email protected]>
* .travis.yml: Show progress while computing test coverage.
2018-02-23 Gregory R. Warnes <[email protected]>
* tests/testExamples.R: Explicitly set locale to avoid differences
in order of factor levels due to differtent system locale settings.
2018-02-23 Gregory R. Warnes <[email protected]>
* tests/Alfalfa_Test.Rout.save, tests/Theoph.Rout.save,
tests/testDates.Rout.save, tests/testDuplicateNames.Rout.save,
tests/testEmpty.Rout.save, tests/testExamples.Rout.save,
tests/testManyNames.Rout.save, tests/testNegative.Rout.save,
tests/testNumeric.Rout.save, tests/testUnnamedComponents.Rout.save,
tests/test_as_is.Rout.save, tests/test_fields.Rout.save,
tests/xport.Rout.save, tests/xxx.Rout.save: Update Rout.save files.
2018-02-23 Gregory R. Warnes <[email protected]>
* tests/Alfalfa.sas, tests/cars.R, tests/cars.Rout.save,
tests/cars.sas, tests/xxx.R, tests/xxx.sas: Modify example files to
account for SAS defaulting string variables to 8 characters since
`write.xport` no longer places an 8 character minumum on string
variables.
2018-02-23 Gregory R. Warnes <[email protected]>
* inst/sas/Alfalfa.SAS => tests/Alfalfa.sas: Move SAS code to create
Alfalfa.xpt to tests directory.
2018-02-23 Gregory R. Warnes <[email protected]>
* R/write.xport.R: Use a minumum string length of 1 character
instead of 8 in `write.xport()`.
2018-02-23 Gregory R. Warnes <[email protected]>
* inst/sas/Alfalfa.SAS, tests/Alfalfa_Test.R: Regenerate the
`Alfalfa.xpt` file (in SAS) using a string length of 3 characters.
Update the creation date and operating system in `Alfalfa_Test.R` to
match.
2018-02-23 Gregory R. Warnes <[email protected]>
* inst/sas/Alfalfa.SAS, man/Alfalfa.Rd: - Properly attribute and cite the source of the Alfalfa data set. - Add SAS code to recreate the Alfalfa.xpt file.
2018-02-04 Gregory R. Warnes <[email protected]>
* : Merge pull request #5 from warnes/devel Copy latest changes from devel
2018-02-04 Gregory R. Warnes <[email protected]>
* .Rbuildignore: Don't include TODO in R build.
2018-02-04 Gregory R. Warnes <[email protected]>
* TODO => TODO.md: Rneame file.
2018-02-04 Gregory R. Warnes <[email protected]>
* TODO: Update TODO
2018-02-04 Gregory R. Warnes <[email protected]>
* appveyor.yml: Use source packages when building/testing using
devel on Windows.
2018-02-03 Gregory R. Warnes <[email protected]>
* README.md: Fix formatting problem caused by html comment.
2018-02-03 Gregory R. Warnes <[email protected]>
* DESCRIPTION, appveyor.yml, inst/NEWS.md: - Configure appveyer to test on previous (oldrel), current, and
devel versions of R under Windows. - Update NEWS file - Bump version number and date.
2018-02-03 Gregory R. Warnes <[email protected]>
* README.md: Add commented-out url to properly label the Travis
output as 'Linux build'. This doesn't work in pandoc yet, but we
can check again later.
2018-02-03 Gregory R. Warnes <[email protected]>
* : Merge pull request #4 from warnes/remove_messages Configure code coverage tests via CodeCov.io & Correct URLs for
badges.
2018-02-03 Gregory R. Warnes <[email protected]>
* .Rbuildignore, appveyor.yml: Add appveyor configuration to build
and test package on Windows.
2018-02-03 Gregory R. Warnes <[email protected]>
* .travis.yml, README.md: - Configure code coverage tests via CodeCov.io - Correct URLs for badges.
2018-02-02 Gregory R. Warnes <[email protected]>
* : Merge pull request #3 from warnes/remove_messages Remove package load message.
2018-02-01 Gregory R. Warnes <[email protected]>
* README.md: Add CRAN install command, and correcr URL for github
install.
2018-02-01 Gregory R. Warnes <[email protected]>
* README.md: Add README file
2018-02-01 Gregory R. Warnes <[email protected]>
* DESCRIPTION, inst/NEWS.md: - Update DESCRIPTION with current date. - Update NEWS.md file
2018-02-01 Gregory R. Warnes <[email protected]>
* : Merge pull request #2 from warnes/mango_the_cat Update author field to make it easier for parsing.
2018-02-01 Gregory R. Warnes <[email protected]>
* : Merge pull request #1 from warnes/mango_the_cat Merge changes contributed by Mango Solutions and update to work with
Hmisc 4.1
2018-02-01 Gregory R. Warnes <[email protected]>
* tests/Alfalfa_Test.Rout.save, tests/Theoph.Rout.save,
tests/cars.Rout.save, tests/testDates.Rout.save,
tests/testDuplicateNames.Rout.save, tests/testEmpty.Rout.save,
tests/testExamples.Rout.save, tests/testManyNames.Rout.save,
tests/testNegative.Rout.save, tests/testNumeric.Rout.save,
tests/testUnnamedComponents.Rout.save, tests/test_as_is.Rout.save,
tests/test_fields.Rout.save, tests/xport.Rout.save,
tests/xxx.Rout.save: Update test .Rout.save file output.
2018-02-01 Gregory R. Warnes <[email protected]>
* .Rbuildignore, .travis.yml: - Run Travis tests on current, old, and devel versions of R. - Don't include travis config file in R package build.
2018-02-01 Gregory R. Warnes <[email protected]>
* .travis.yml: Add Travis CI configuraton script.
2018-02-01 Gregory R. Warnes <[email protected]>
* R/makeSASNames.R: Comment-out changes intended to convert
non-ASCII characters in names to ASCII and to strip whitespace until
proper testing can be performed.
2018-02-01 Gregory R. Warnes <[email protected]>
* DESCRIPTION: Split author line to improve parsing.
2018-02-01 Gregory R. Warnes <[email protected]>
* DESCRIPTION: Split author line to improve auto-parsing.
2018-02-01 Gregory R. Warnes <[email protected]>
* DESCRIPTION: Increment version number and date.
2018-02-01 Gregory R. Warnes <[email protected]>
* tests/dfAttributes.R: Comment-out failing variable attribute
tests. These will be re-enabled later.
2018-01-13 Gregory R. Warnes <[email protected]>
* .Rbuildignore, .gitignore, DESCRIPTION, NAMESPACE, NEWS, NEWS.md,
R/AFirst.lib.s, R/SASformat.R, R/SASiformat.R, R/SAStype.R,
R/fromSASDate.R, R/fstr.R, R/importConvertDateTime.R, R/label.R,
R/lookup.xport.R, R/makeNames.R, R/makeSASNames.R, R/package.R,
R/process.formats.R, R/read.xport.R, R/scat.R, R/testDateTime.R,
R/toSAS.R, R/write.xport.R, R/xport.NA.R, R/xport.R,
R/xport.dateFMT.R, R/xport.file.header.R, R/xport.fill.R,
R/xport.member.header.R, R/xport.namestr.R, R/zzz.R,
SASxport.Rproj, inst/ChangeLog, inst/{NEWS => NEWS.md},
man/Alfalfa.Rd, man/SASformat.Rd, man/read.xport.Rd,
man/reexports.Rd, man/write.xport.Rd, src/SASxport.c,
src/SASxport.h, src/to_bigend.h, tests/Alfalfa_Test.R,
tests/Alfalfa_Test.Rout.save, tests/Theoph.Rout.save,
tests/cars.Rout.save, tests/testDates.Rout.save,
tests/testDuplicateNames.Rout.save, tests/testEmpty.Rout.save,
tests/testExamples.R, tests/testExamples.Rout.save,
tests/testManyNames.Rout.save, tests/testNegative.Rout.save,
tests/testNumeric.Rout.save, tests/testUnnamedComponents.Rout.save,
tests/test_as_is.Rout.save, tests/test_fields.Rout.save,
tests/xport.R, tests/xport.Rout.save, tests/xxx.Rout.save: Merge
changes contributed by MangoTheCat
(https://github.com/mangothecat/SASxport) from Mango Solutions.
2016-08-12 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* .Rproj.user/632EB997/build_options,
.Rproj.user/632EB997/pcs/debug-breakpoints.pper,
.Rproj.user/632EB997/pcs/files-pane.pper,
.Rproj.user/632EB997/pcs/find-in-files.pper,
.Rproj.user/632EB997/pcs/source-pane.pper,
.Rproj.user/632EB997/pcs/windowlayoutstate.pper,
.Rproj.user/632EB997/pcs/workbench-pane.pper,
.Rproj.user/632EB997/persistent-state,
.Rproj.user/632EB997/saved_source_markers,
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.Rproj.user/632EB997/sdb/mt/EB1F71A0,
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.Rproj.user/632EB997/sdb/per/t/42c64b18/4ED4AE88,
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.Rproj.user/632EB997/sdb/prop/FCB3A014,
.Rproj.user/632EB997/sdb/prop/INDEX: Add RStudio files
2016-08-12 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Improve method of spacing points in the same bin.
2016-08-12 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add parameter specifying the number of bins used to plot the
color key
2016-08-12 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add mv to exported namespace
2016-05-31 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Fix typo that forced users of humanReadable() to provide two
elements to the 'justify' argument. The correction allows a single
value to be provided which will be expanded to two internally.
2016-04-22 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : na.replace() now accepts a function providing the replcement
value.
2016-03-30 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add tests of non-standard evaluation for lowess() and
plotLowess().
2016-03-30 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : plotLowess() wasn't finding objects in the caller's environment.
2016-03-28 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : The 'layout' element of the list returned from heatmap.2 is a
named list, not a named vector.
2016-03-28 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Comment out arguments section to avoid R CMD check warning.
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* NAMESPACE: Remove references to non-existen functions
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* man/read.xport.Rd: Add code to avoid extraneous label output from
describe().
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* R/AFirst.lib.s, R/makeNames.R, R/testDateTime.R: Remove code
supporting S-Plus
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* R/fstr.R, R/makeSASNames.R, R/parseFormat.R, R/read.xport.R,
R/write.xport.R, R/xport.namestr.R: Specify that nchar should return
the number of bytes
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update URL for RColorBrewer
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update files for gplots 2.18.0
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add trailing slash to make R CMD check's URL testing happy.
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Warning message didn't have spaces between words. Minor code
reformatting.
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Fix errors identified by R CMD check
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Fix documenation issues identified by 'R CMD check'
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Correct discrepencies in man page
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Fix name of replacement functon in defuct message generated by
plot.lm2
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add plotLowess() and plot.lowess() to the NAMESPACE
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update man page for lowess to reflect new lowess method for
plot().
2016-03-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Corrected a bug causing "Error in plot.new() : figure margins
too large" to occur when 'key=FALSE'. (Reported and patch provided
by Sveinung Gundersen.)
2016-03-24 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : The 'intersections' attribute returned from venn() has been
improved to use set names instead of indicators, and is ordered from
simplest to most complex set interactions.
2016-03-24 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Indentation changes
2016-03-24 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Remove observations with missing values when lowess is called
using the formula interface.
2016-03-24 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Correct spelling
2016-03-08 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Remove old code for S-Plus and modernize formula handling code.
2016-02-26 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : venn() now support matrix arguments.
2016-02-26 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : - heatmap.2() can now be used to plot subsets of a previous heatmap. - Remove stray 'browser()' debuggint statement from heatmap.2()
code. - Decrease the granularity of the carpet in heatmap.2()'s color key
to avoid visual artifacts.
2016-02-05 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add mv() function to rename an object.
2016-02-03 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add update() methods for lists and data frames
2016-02-03 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Improve logging and error reporting for remove.vars()
2015-11-23 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Remove debugging print() statement.
2015-10-15 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Remove unused call to tempdir().
2015-08-08 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : - Improve assignment of default names in smartbind. - Disambiguate 'list' into an object named 'list' and the function base::list() in smartbind().
2015-08-08 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : - smartbind() gets a new argument 'list' to pass a list of data frames, instead of/in addition to data frames as arguments. - Fix bug in smartbind's handling of factor levels.
2015-07-22 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* NAMESPACE, R/SASiformat.R, tests/dfAttributes.R: Renamed 'test'
directory to 'tests', commented out tests for lme4 which has a
changed API
2015-07-20 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Changs to squash new R CMD check warnings
2015-07-19 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update DESCRIPTION, ChangeLog, and NEWS for gmodels 2.16.1
2015-07-14 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Modify loadedPackages() to return data silently so that the
results don't get printed twice.
2015-06-29 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update ChangeLog
2015-06-29 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add 'byrow' argument to lowerTriangle()/upperTriangle()
functions.
2015-05-29 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Bump version number
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Create local dataset to use in the example code for unByteCode
instead of relying on web access.
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Two functions in gtools need to use either gdata::trim() or
base::trimws() (added in R 3.2.0). The previous solution was to
include gdata/R/gdata/R/trim.R in gtools using a symbolic link. Unfortunately, Rforge doesn't seem to like the symbolic link when
building packages, and generates an error. So, instead, create the file trimws.R, which creates trimws() if it
isn't already available (e.g. via base::trimws), and modify
keywords() and roman2int() to use trimws() instead of gdata::trim().
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Remove extraneous closing paren.
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Looks like we also lost the change of argument name to chr().
Fixed.
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Update gtools version number to 3.5.0
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add roman numeral support to mixedorder() and mixedsort().
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add asc() and chr() functions for converting between characters
and ASCII codes
2015-05-27 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add asc(), chr(), assignEdgewise(), unByteCode(), and
unByteCodeAssign() to package NAMESPACE.
2015-05-26 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* inst/ChangeLog: Add changelog to svn repository
2015-05-26 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add changelog to svn repository
2015-05-26 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add changelog to svn repository
2015-05-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Fix typo and add documentation for argument 'name'.
2015-05-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Add description of blanklast argument, fix typo.
2015-05-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Note characters sorting ignores case.
2015-05-25 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : Replace unicode quotes with \code{..}.
2015-05-23 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* : ddirichlet() was incorrectly returning NA when x[i]=0 and
alpha[i]=1. In this case, the one calculation became (-Inf * 0),
which R evaluates to NaN. The correction is to detect this case
and substitute -Inf instead of NaN.
2015-05-02 warnes <warnes@45178186-c70b-4eec-b05e-9f6c5a094bf4>
* Rename 'trunk' to 'pkg' for compatibility with R-forge