diff --git a/revdep/README.md b/revdep/README.md
index f175d11..e502010 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,243 +1,9 @@
# Revdeps
-## Failed to check (213)
+## New problems (2)
-|package |version |error |warning |note |
-|:-----------------------|:----------|:-----|:-------|:----|
-|adjclust |? | | | |
-|ANOM |0.5 |1 | | |
-|apollo |0.3.3 |1 | | |
-|arealDB |0.6.3 |1 | | |
-|assessor |1.1.0 |1 | | |
-|AutoScore |1.0.0 |1 | | |
-|baRulho |? | | | |
-|bayesCT |0.99.3 |1 | | |
-|bayesDP |1.3.6 |1 | | |
-|BayesESS |0.1.19 |1 | | |
-|BayesFactor |0.9.12-4.7 |1 | | |
-|BayesSurvive |0.0.2 |1 | | |
-|bbknnR |1.1.1 |1 | | |
-|bbmix |1.0.0 |1 | | |
-|BCClong |1.0.3 |1 | | |
-|BFpack |1.3.0 |1 | | |
-|BGGM |2.1.3 |1 | | |
-|biosensors.usc |1.0 |1 | | |
-|bmstdr |0.7.9 |1 | | |
-|bndovb |1.1 |1 | | |
-|bsub |1.1.0 |1 | | |
-|CACIMAR |1.0.0 |1 | | |
-|caROC |0.1.5 |1 | | |
-|CGPfunctions |0.6.3 |1 | | |
-|chemodiv |? | | | |
-|chicane |? | | | |
-|chipPCR |1.0-2 |1 | | |
-|cinaR |? | | | |
-|cmprskcoxmsm |0.2.1 |1 | | |
-|CNVScope |? | | | |
-|coarseDataTools |0.6-6 |1 | | |
-|COMBO |1.1.0 |1 | | |
-|COMMA |1.0.0 |1 | | |
-|ConnectednessApproach |1.0.3 |1 | | |
-|conos |? | | | |
-|cotram |? | | | |
-|countSTAR |1.0.2 |1 | | |
-|crosstalkr |? | | | |
-|CSCNet |0.1.2 |1 | | |
-|ctsem |3.10.1 |1 | | |
-|dataone |2.2.2 |1 | | |
-|datapack |1.4.1 |1 | | |
-|deeptrafo |? | | | |
-|diveMove |1.6.2 |1 | | |
-|do |2.0.0.0 |1 | | |
-|DR.SC |3.4 |1 | | |
-|driveR |? | | | |
-|drtmle |1.1.2 |1 | | |
-|DrugSim2DR |? | | | |
-|DRviaSPCN |? | | | |
-|ech |0.1.3 |1 | | |
-|EcoEnsemble |1.1.0 |1 | | |
-|ecolottery |1.0.0 |1 | | |
-|EdSurvey |4.0.7 |1 | | |
-|EpiEstim |2.2-4 |1 | | |
-|erah |2.0.1 |1 | | |
-|EWSmethods |? | | | |
-|FAIRmaterials |0.4.2.1 |1 | | |
-|FREEtree |0.1.0 |1 | | |
-|GALLO |? | | | |
-|gap |? | | | |
-|geneHapR |? | | | |
-|GeneNMF |0.6.0 |1 | | |
-|GeneSelectR |? | | | |
-|geomorph |? | | | |
-|gJLS2 |0.2.0 |1 | | |
-|gllvm |1.4.3 |1 | | |
-|gmoTree |? | | | |
-|gpuR |2.0.6 |1 | | |
-|hettx |0.1.3 |1 | | |
-|Hmisc |? | | | |
-|iClusterVB |0.1.2 |1 | | |
-|iNZightPlots |2.15.3 |1 | | |
-|IRexamples |0.0.4 |1 | | |
-|isodistrreg |0.1.0 |1 | | |
-|joineRML |0.4.6 |1 | | |
-|kdml |1.0.0 |1 | | |
-|kibior |? | | | |
-|kstMatrix |? | | | |
-|L2E |2.0 |1 | | |
-|lchemix |0.1.0 |1 | | |
-|ldsep |? | | | |
-|locuszoomr |? | | | |
-|loon.shiny |? | | | |
-|loon.tourr |? | | | |
-|LorenzRegression |1.0.0 |1 | | |
-|lsirm12pl |1.3.3 |1 | | |
-|MAAPER |? | | | |
-|marlod |0.1.1 |1 | | |
-|MARVEL |? | | | |
-|MBmca |1.0.1-3 |1 | | |
-|mbsts |3.0 |1 | | |
-|Mega2R |? | | | |
-|metajam |0.3.1 |1 | | |
-|mHMMbayes |1.1.0 |1 | | |
-|MicroSEC |? | | | |
-|MiRKAT |1.2.3 |1 | | |
-|MitoHEAR |? | | | |
-|miWQS |0.4.4 |1 | | |
-|MLML2R |? | | | |
-|mlt.docreg |? | | | |
-|MOCHA |? | | | |
-|modeLLtest |1.0.4 |1 | | |
-|MRZero |0.2.0 |1 | | |
-|MultiKink |0.2.0 |1 | | |
-|multilevelTools |0.1.1 |1 | | |
-|multinma |0.7.1 |1 | | |
-|mvDFA |0.0.4 |1 | | |
-|MXM |1.5.5 |1 | | |
-|nebula |1.5.3 |1 | | |
-|NetworkChange |0.8 |1 | | |
-|newIMVC |0.1.0 |1 | | |
-|nlpred |1.0.1 |1 | | |
-|noncomplyR |1.0 |1 | | |
-|ohun |? | | | |
-|oncoPredict |? | | | |
-|ontologics |0.7.0 |1 | | |
-|OVtool |1.0.3 |1 | | |
-|pagoda2 |? | | | |
-|PAMpal |1.2.1 |1 | | |
-|paths |0.1.1 |1 | | |
-|PathwaySpace |? | | | |
-|pencal |? | | | |
-|pez |1.2-4 |1 | | |
-|piecewiseSEM |? | | | |
-|polyRAD |? | | | |
-|pould |1.0.1 |1 | | |
-|pre |1.0.7 |1 | | |
-|ProFAST |? | | | |
-|PRSPGx |0.3.0 |1 | | |
-|psbcSpeedUp |2.0.7 |1 | | |
-|pscore |0.4.0 |1 | | |
-|pssmooth |1.0.3 |1 | | |
-|ptmixed |? | | | |
-|qte |1.3.1 |1 | | |
-|Qtools |1.5.9 |1 | | |
-|QuantileGH |? | | | |
-|quantilogram |3.1.1 |1 | | |
-|quantregGrowth |1.7-1 |1 | | |
-|quid |0.0.1 |1 | | |
-|RATest |0.1.10 |1 | | |
-|rddtools |1.6.0 |1 | | |
-|rdflib |0.2.9 |1 | | |
-|redland |1.0.17-18 |1 | | |
-|revert |? | | | |
-|RFLPtools |? | | | |
-|Rgff |? | | | |
-|RGraphSpace |? | | | |
-|rms |? | | | |
-|RNAseqQC |? | | | |
-|robmed |1.0.2 |1 | | |
-|RPPASPACE |1.0.10 |1 | | |
-|RQdeltaCT |1.3.0 |1 | | |
-|rqPen |4.1.1 |1 | | |
-|Rraven |? | | | |
-|RRPP |? | | | |
-|rsolr |? | | | |
-|rstanarm |2.32.1 |1 | | |
-|RTIGER |? | | | |
-|rTwig |1.1.0 |1 | | |
-|RVA |? | | | |
-|scAnnotate |0.3 |1 | | |
-|scaper |0.1.0 |1 | | |
-|scCustomize |? | | | |
-|SCdeconR |1.0.0 |1 | | |
-|scGate |1.6.2 |1 | | |
-|scGOclust |0.2.1 |1 | | |
-|SCIntRuler |0.99.6 |1 | | |
-|scITD |? | | | |
-|scMappR |1.0.11 |1 | | |
-|SCRIP |1.0.0 |1 | | |
-|SeBR |1.0.0 |1 | | |
-|SeedMatchR |? | | | |
-|semicmprskcoxmsm |0.2.0 |1 | | |
-|SGP |2.1-0.0 |1 | | |
-|shinyTempSignal |0.0.8 |1 | | |
-|sigminer |? | | | |
-|SimplyAgree |0.2.0 |1 | | |
-|sizeMat |1.1.2 |1 | | |
-|SNPassoc |? | | | |
-|snplinkage |? | | | |
-|sorocs |0.1.0 |1 | | |
-|SortedEffects |1.7.0 |1 | | |
-|SoupX |1.6.2 |1 | | |
-|SpatialDDLS |? | | | |
-|speakeasyR |? | | | |
-|spikeSlabGAM |1.1-19 |1 | | |
-|stats4teaching |? | | | |
-|statsr |0.3.0 |1 | | |
-|stR |0.7 |1 | | |
-|STREAK |1.0.0 |1 | | |
-|streamDAG |? | | | |
-|SubtypeDrug |? | | | |
-|tbm |? | | | |
-|TH.data |? | | | |
-|tidyseurat |0.8.0 |1 | | |
-|tidyvpc |1.5.1 |1 | | |
-|tram |? | | | |
-|tramME |? | | | |
-|tramnet |? | | | |
-|tramvs |? | | | |
-|TriDimRegression |1.0.2 |1 | | |
-|TSrepr |1.1.0 |1 | | |
-|twang |2.6.1 |1 | | |
-|TwitterAutomatedTrading |0.1.0 |1 | | |
-|updog |? | | | |
-|valr |? | | | |
-|vdg |1.2.3 |1 | | |
-|visa |0.1.0 |1 | | |
-|WRTDStidal |1.1.4 |1 | | |
-|xnet |? | | | |
-|yarrr |0.1.5 |1 | | |
-|zen4R |0.10 |1 | | |
-
-## New problems (18)
-
-|package |version |error |warning |note |
-|:-------------|:-------|:------|:-------|:--------|
-|[babelmixr2](problems.md#babelmixr2)|0.1.2 | | |1 __+1__ |
-|[BeeGUTS](problems.md#beeguts)|1.1.3 | | |2 __+1__ |
-|[coro](problems.md#coro)|1.0.4 |__+1__ | | |
-|[etwfe](problems.md#etwfe)|0.4.0 | | |__+1__ |
-|[fauxpas](problems.md#fauxpas)|0.5.2 | | |__+1__ |
-|[multiverse](problems.md#multiverse)|0.6.1 |1 | |__+1__ |
-|[OptimModel](problems.md#optimmodel)|2.0-1 | | |__+1__ |
-|[ordinalbayes](problems.md#ordinalbayes)|0.1.1 | | |1 __+1__ |
-|[PopED](problems.md#poped)|0.6.0 |1 | |1 __+1__ |
-|[posologyr](problems.md#posologyr)|1.2.6 | | |__+1__ |
-|[rgho](problems.md#rgho)|3.0.2 |__+1__ | | |
-|[rTensor2](problems.md#rtensor2)|2.0.0 | | |__+1__ |
-|[rxode2](problems.md#rxode2)|2.1.3 |__+1__ | |1 |
-|[spathial](problems.md#spathial)|0.1.2 | | |2 __+1__ |
-|[trampoline](problems.md#trampoline)|0.1.1 |1 | |__+1__ |
-|[treesliceR](problems.md#treeslicer)|1.0.2 |__+1__ | | |
-|[WindCurves](problems.md#windcurves)|0.2 | | |__+1__ |
-|[wordpredictor](problems.md#wordpredictor)|0.0.3 |1 | |__+1__ |
+|package |version |error |warning |note |
+|:----------|:-------|:-----|:-------|:------|
+|[knitr](problems.md#knitr)|1.48 |1 | |__+1__ |
+|[multiverse](problems.md#multiverse)|0.6.1 |1 | |__+1__ |
diff --git a/revdep/cran.md b/revdep/cran.md
index d7e5202..decbe91 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,271 +1,5 @@
## revdepcheck results
-We checked 8826 reverse dependencies (8816 from CRAN + 10 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 21 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 18 new problems
- * We failed to check 203 packages
-
-Issues with CRAN packages are summarised below.
-
-### New problems
-(This reports the first line of each new failure)
-
-* babelmixr2
- checking re-building of vignette outputs ... NOTE
-
-* BeeGUTS
- checking re-building of vignette outputs ... NOTE
-
-* coro
- checking tests ... ERROR
-
-* etwfe
- checking re-building of vignette outputs ... NOTE
-
-* fauxpas
- checking installed package size ... NOTE
-
-* multiverse
- checking re-building of vignette outputs ... NOTE
-
-* OptimModel
- checking re-building of vignette outputs ... NOTE
-
-* ordinalbayes
- checking installed package size ... NOTE
-
-* PopED
- checking re-building of vignette outputs ... NOTE
-
-* posologyr
- checking re-building of vignette outputs ... NOTE
-
-* rgho
- checking tests ... ERROR
-
-* rTensor2
- checking installed package size ... NOTE
-
-* rxode2
- checking re-building of vignette outputs ... ERROR
-
-* spathial
- checking re-building of vignette outputs ... NOTE
-
-* trampoline
- checking re-building of vignette outputs ... NOTE
-
-* treesliceR
- checking tests ... ERROR
-
-* WindCurves
- checking re-building of vignette outputs ... NOTE
-
-* wordpredictor
- checking re-building of vignette outputs ... NOTE
-
-### Failed to check
-
-* adjclust (NA)
-* ANOM (NA)
-* apollo (NA)
-* arealDB (NA)
-* assessor (NA)
-* AutoScore (NA)
-* baRulho (NA)
-* bayesCT (NA)
-* bayesDP (NA)
-* BayesESS (NA)
-* BayesFactor (NA)
-* BayesSurvive (NA)
-* bbknnR (NA)
-* bbmix (NA)
-* BCClong (NA)
-* BFpack (NA)
-* BGGM (NA)
-* biosensors.usc (NA)
-* bmstdr (NA)
-* bndovb (NA)
-* bsub (NA)
-* CACIMAR (NA)
-* caROC (NA)
-* CGPfunctions (NA)
-* chemodiv (NA)
-* chicane (NA)
-* chipPCR (NA)
-* cinaR (NA)
-* cmprskcoxmsm (NA)
-* CNVScope (NA)
-* coarseDataTools (NA)
-* COMBO (NA)
-* COMMA (NA)
-* ConnectednessApproach (NA)
-* conos (NA)
-* cotram (NA)
-* countSTAR (NA)
-* crosstalkr (NA)
-* CSCNet (NA)
-* ctsem (NA)
-* dataone (NA)
-* datapack (NA)
-* deeptrafo (NA)
-* diveMove (NA)
-* do (NA)
-* DR.SC (NA)
-* driveR (NA)
-* drtmle (NA)
-* DrugSim2DR (NA)
-* DRviaSPCN (NA)
-* ech (NA)
-* EcoEnsemble (NA)
-* ecolottery (NA)
-* EdSurvey (NA)
-* EpiEstim (NA)
-* erah (NA)
-* FAIRmaterials (NA)
-* FREEtree (NA)
-* GALLO (NA)
-* gap (NA)
-* geneHapR (NA)
-* GeneNMF (NA)
-* GeneSelectR (NA)
-* gJLS2 (NA)
-* gllvm (NA)
-* gpuR (NA)
-* hettx (NA)
-* Hmisc (NA)
-* iClusterVB (NA)
-* iNZightPlots (NA)
-* IRexamples (NA)
-* isodistrreg (NA)
-* joineRML (NA)
-* kdml (NA)
-* kibior (NA)
-* L2E (NA)
-* lchemix (NA)
-* ldsep (NA)
-* locuszoomr (NA)
-* loon.shiny (NA)
-* loon.tourr (NA)
-* LorenzRegression (NA)
-* lsirm12pl (NA)
-* MAAPER (NA)
-* marlod (NA)
-* MARVEL (NA)
-* MBmca (NA)
-* mbsts (NA)
-* Mega2R (NA)
-* metajam (NA)
-* mHMMbayes (NA)
-* MicroSEC (NA)
-* MiRKAT (NA)
-* MitoHEAR (NA)
-* miWQS (NA)
-* MLML2R (NA)
-* mlt.docreg (NA)
-* MOCHA (NA)
-* modeLLtest (NA)
-* MRZero (NA)
-* MultiKink (NA)
-* multilevelTools (NA)
-* multinma (NA)
-* mvDFA (NA)
-* MXM (NA)
-* nebula (NA)
-* NetworkChange (NA)
-* newIMVC (NA)
-* nlpred (NA)
-* noncomplyR (NA)
-* ohun (NA)
-* oncoPredict (NA)
-* ontologics (NA)
-* OVtool (NA)
-* pagoda2 (NA)
-* PAMpal (NA)
-* paths (NA)
-* pencal (NA)
-* pez (NA)
-* polyRAD (NA)
-* pould (NA)
-* pre (NA)
-* ProFAST (NA)
-* PRSPGx (NA)
-* psbcSpeedUp (NA)
-* pscore (NA)
-* pssmooth (NA)
-* ptmixed (NA)
-* qte (NA)
-* Qtools (NA)
-* quantilogram (NA)
-* quantregGrowth (NA)
-* quid (NA)
-* RATest (NA)
-* rddtools (NA)
-* rdflib (NA)
-* redland (NA)
-* revert (NA)
-* RFLPtools (NA)
-* Rgff (NA)
-* RNAseqQC (NA)
-* robmed (NA)
-* RPPASPACE (NA)
-* RQdeltaCT (NA)
-* rqPen (NA)
-* Rraven (NA)
-* rsolr (NA)
-* rstanarm (NA)
-* RTIGER (NA)
-* rTwig (NA)
-* RVA (NA)
-* scAnnotate (NA)
-* scaper (NA)
-* scCustomize (NA)
-* SCdeconR (NA)
-* scGate (NA)
-* scGOclust (NA)
-* SCIntRuler (NA)
-* scITD (NA)
-* scMappR (NA)
-* SCRIP (NA)
-* SeBR (NA)
-* SeedMatchR (NA)
-* semicmprskcoxmsm (NA)
-* SGP (NA)
-* shinyTempSignal (NA)
-* sigminer (NA)
-* SimplyAgree (NA)
-* sizeMat (NA)
-* SNPassoc (NA)
-* snplinkage (NA)
-* sorocs (NA)
-* SortedEffects (NA)
-* SoupX (NA)
-* SpatialDDLS (NA)
-* speakeasyR (NA)
-* spikeSlabGAM (NA)
-* stats4teaching (NA)
-* statsr (NA)
-* stR (NA)
-* STREAK (NA)
-* streamDAG (NA)
-* SubtypeDrug (NA)
-* tbm (NA)
-* TH.data (NA)
-* tidyseurat (NA)
-* tidyvpc (NA)
-* tram (NA)
-* tramME (NA)
-* tramnet (NA)
-* tramvs (NA)
-* TriDimRegression (NA)
-* TSrepr (NA)
-* twang (NA)
-* TwitterAutomatedTrading (NA)
-* updog (NA)
-* valr (NA)
-* vdg (NA)
-* visa (NA)
-* WRTDStidal (NA)
-* xnet (NA)
-* yarrr (NA)
-* zen4R (NA)
+I also worked with Kurt to check all packages that use knitr, since evaluate powers knitr. Of the 221 packages I either couldn't check or failed their checks, 7 had failures on Kurt's check machine. I reported all problems upstream, providing patches where necessary. You can see a summary of my actions at https://github.com/r-lib/evaluate/issues/210#issuecomment-2339048094.
diff --git a/revdep/failures.md b/revdep/failures.md
index d7c7821..9a20736 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,14524 +1 @@
-# adjclust
-
-
-
-* Version: 0.6.9
-* GitHub: https://github.com/pneuvial/adjclust
-* Source code: https://github.com/cran/adjclust
-* Date/Publication: 2024-02-08 08:50:05 UTC
-* Number of recursive dependencies: 119
-
-Run `revdepcheck::cloud_details(, "adjclust")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/adjclust/new/adjclust.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘adjclust/DESCRIPTION’ ... OK
-...
- When sourcing ‘hicClust.R’:
-Error: there is no package called ‘HiTC’
-Execution halted
-
- ‘hicClust.Rmd’ using ‘UTF-8’... failed
- ‘notesCHAC.Rmd’ using ‘UTF-8’... OK
- ‘snpClust.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 2 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/adjclust/old/adjclust.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘adjclust/DESCRIPTION’ ... OK
-...
- When sourcing ‘hicClust.R’:
-Error: there is no package called ‘HiTC’
-Execution halted
-
- ‘hicClust.Rmd’ using ‘UTF-8’... failed
- ‘notesCHAC.Rmd’ using ‘UTF-8’... OK
- ‘snpClust.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 2 NOTEs
-
-
-
-
-
-```
-# ANOM
-
-
-
-* Version: 0.5
-* GitHub: https://github.com/PhilipPallmann/ANOM
-* Source code: https://github.com/cran/ANOM
-* Date/Publication: 2017-04-12 13:32:33 UTC
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "ANOM")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ANOM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ANOM’ ...
-** package ‘ANOM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ANOM’
-* removing ‘/tmp/workdir/ANOM/new/ANOM.Rcheck/ANOM’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ANOM’ ...
-** package ‘ANOM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ANOM’
-* removing ‘/tmp/workdir/ANOM/old/ANOM.Rcheck/ANOM’
-
-
-```
-# apollo
-
-
-
-* Version: 0.3.3
-* GitHub: NA
-* Source code: https://github.com/cran/apollo
-* Date/Publication: 2024-06-04 09:46:44 UTC
-* Number of recursive dependencies: 79
-
-Run `revdepcheck::cloud_details(, "apollo")` for more info
-
-
-
-## In both
-
-* checking whether package ‘apollo’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/apollo/new/apollo.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘apollo’ ...
-** package ‘apollo’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘apollo’
-* removing ‘/tmp/workdir/apollo/new/apollo.Rcheck/apollo’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘apollo’ ...
-** package ‘apollo’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘apollo’
-* removing ‘/tmp/workdir/apollo/old/apollo.Rcheck/apollo’
-
-
-```
-# arealDB
-
-
-
-* Version: 0.6.3
-* GitHub: https://github.com/luckinet/arealDB
-* Source code: https://github.com/cran/arealDB
-* Date/Publication: 2023-07-03 10:00:02 UTC
-* Number of recursive dependencies: 110
-
-Run `revdepcheck::cloud_details(, "arealDB")` for more info
-
-
-
-## In both
-
-* checking whether package ‘arealDB’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘arealDB’ ...
-** package ‘arealDB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘arealDB’
-* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘arealDB’ ...
-** package ‘arealDB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘arealDB’
-* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’
-
-
-```
-# assessor
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/jhlee1408/assessor
-* Source code: https://github.com/cran/assessor
-* Date/Publication: 2024-04-03 04:23:02 UTC
-* Number of recursive dependencies: 107
-
-Run `revdepcheck::cloud_details(, "assessor")` for more info
-
-
-
-## In both
-
-* checking whether package ‘assessor’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/assessor/new/assessor.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘assessor’ ...
-** package ‘assessor’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘assessor’
-* removing ‘/tmp/workdir/assessor/new/assessor.Rcheck/assessor’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘assessor’ ...
-** package ‘assessor’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘assessor’
-* removing ‘/tmp/workdir/assessor/old/assessor.Rcheck/assessor’
-
-
-```
-# AutoScore
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/nliulab/AutoScore
-* Source code: https://github.com/cran/AutoScore
-* Date/Publication: 2022-10-15 22:15:26 UTC
-* Number of recursive dependencies: 170
-
-Run `revdepcheck::cloud_details(, "AutoScore")` for more info
-
-
-
-## In both
-
-* checking whether package ‘AutoScore’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘AutoScore’ ...
-** package ‘AutoScore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘AutoScore’
-* removing ‘/tmp/workdir/AutoScore/new/AutoScore.Rcheck/AutoScore’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘AutoScore’ ...
-** package ‘AutoScore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘AutoScore’
-* removing ‘/tmp/workdir/AutoScore/old/AutoScore.Rcheck/AutoScore’
-
-
-```
-# baRulho
-
-
-
-* Version: 2.1.2
-* GitHub: https://github.com/ropensci/baRulho
-* Source code: https://github.com/cran/baRulho
-* Date/Publication: 2024-08-31 13:10:07 UTC
-* Number of recursive dependencies: 115
-
-Run `revdepcheck::cloud_details(, "baRulho")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/baRulho/new/baRulho.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘baRulho/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'warbleR', 'ohun'
-
-Package suggested but not available for checking: ‘Rraven’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/baRulho/old/baRulho.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘baRulho/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'warbleR', 'ohun'
-
-Package suggested but not available for checking: ‘Rraven’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# bayesCT
-
-
-
-* Version: 0.99.3
-* GitHub: https://github.com/thevaachandereng/bayesCT
-* Source code: https://github.com/cran/bayesCT
-* Date/Publication: 2020-07-01 09:30:02 UTC
-* Number of recursive dependencies: 122
-
-Run `revdepcheck::cloud_details(, "bayesCT")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bayesCT’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bayesCT’ ...
-** package ‘bayesCT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bayesCT’
-* removing ‘/tmp/workdir/bayesCT/new/bayesCT.Rcheck/bayesCT’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bayesCT’ ...
-** package ‘bayesCT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bayesCT’
-* removing ‘/tmp/workdir/bayesCT/old/bayesCT.Rcheck/bayesCT’
-
-
-```
-# bayesDP
-
-
-
-* Version: 1.3.6
-* GitHub: https://github.com/graemeleehickey/bayesDP
-* Source code: https://github.com/cran/bayesDP
-* Date/Publication: 2022-01-30 22:20:02 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "bayesDP")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bayesDP’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bayesDP’ ...
-** package ‘bayesDP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/bayesDP/new/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bayesDP’
-* removing ‘/tmp/workdir/bayesDP/new/bayesDP.Rcheck/bayesDP’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bayesDP’ ...
-** package ‘bayesDP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c bdplm.cpp -o bdplm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c ppexp.cpp -o ppexp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bayesDP.so RcppExports.o bdplm.o ppexp.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/bayesDP/old/bayesDP.Rcheck/00LOCK-bayesDP/00new/bayesDP/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bayesDP’
-* removing ‘/tmp/workdir/bayesDP/old/bayesDP.Rcheck/bayesDP’
-
-
-```
-# BayesESS
-
-
-
-* Version: 0.1.19
-* GitHub: NA
-* Source code: https://github.com/cran/BayesESS
-* Date/Publication: 2019-11-25 19:50:06 UTC
-* Number of recursive dependencies: 41
-
-Run `revdepcheck::cloud_details(, "BayesESS")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BayesESS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BayesESS/new/BayesESS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BayesESS’ ...
-** package ‘BayesESS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
-...
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BayesESS.so RcppExports.o fastMean.o fastProd.o fastSum.o registerDynamicSymbol.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/BayesESS/new/BayesESS.Rcheck/00LOCK-BayesESS/00new/BayesESS/libs
-** R
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘BayesESS’
-* removing ‘/tmp/workdir/BayesESS/new/BayesESS.Rcheck/BayesESS’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BayesESS’ ...
-** package ‘BayesESS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
-...
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BayesESS.so RcppExports.o fastMean.o fastProd.o fastSum.o registerDynamicSymbol.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/BayesESS/old/BayesESS.Rcheck/00LOCK-BayesESS/00new/BayesESS/libs
-** R
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘BayesESS’
-* removing ‘/tmp/workdir/BayesESS/old/BayesESS.Rcheck/BayesESS’
-
-
-```
-# BayesFactor
-
-
-
-* Version: 0.9.12-4.7
-* GitHub: https://github.com/richarddmorey/BayesFactor
-* Source code: https://github.com/cran/BayesFactor
-* Date/Publication: 2024-01-24 15:02:50 UTC
-* Number of recursive dependencies: 78
-
-Run `revdepcheck::cloud_details(, "BayesFactor")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BayesFactor’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BayesFactor’ ...
-** package ‘BayesFactor’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BayesFactor’
-* removing ‘/tmp/workdir/BayesFactor/new/BayesFactor.Rcheck/BayesFactor’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BayesFactor’ ...
-** package ‘BayesFactor’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppCallback.cpp -o RcppCallback.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BayesFactor’
-* removing ‘/tmp/workdir/BayesFactor/old/BayesFactor.Rcheck/BayesFactor’
-
-
-```
-# BayesSurvive
-
-
-
-* Version: 0.0.2
-* GitHub: https://github.com/ocbe-uio/BayesSurvive
-* Source code: https://github.com/cran/BayesSurvive
-* Date/Publication: 2024-06-04 13:20:12 UTC
-* Number of recursive dependencies: 129
-
-Run `revdepcheck::cloud_details(, "BayesSurvive")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BayesSurvive’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BayesSurvive’ ...
-** package ‘BayesSurvive’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether the compiler supports GNU C++... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘BayesSurvive’
-* removing ‘/tmp/workdir/BayesSurvive/new/BayesSurvive.Rcheck/BayesSurvive’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BayesSurvive’ ...
-** package ‘BayesSurvive’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether the compiler supports GNU C++... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘BayesSurvive’
-* removing ‘/tmp/workdir/BayesSurvive/old/BayesSurvive.Rcheck/BayesSurvive’
-
-
-```
-# bbknnR
-
-
-
-* Version: 1.1.1
-* GitHub: https://github.com/ycli1995/bbknnR
-* Source code: https://github.com/cran/bbknnR
-* Date/Publication: 2024-02-13 10:20:03 UTC
-* Number of recursive dependencies: 163
-
-Run `revdepcheck::cloud_details(, "bbknnR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bbknnR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bbknnR’ ...
-** package ‘bbknnR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/bbknnR/new/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
-** R
-...
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘panc8_small’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bbknnR’
-* removing ‘/tmp/workdir/bbknnR/new/bbknnR.Rcheck/bbknnR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bbknnR’ ...
-** package ‘bbknnR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c data_manipulation.cpp -o data_manipulation.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o bbknnR.so RcppExports.o data_manipulation.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/bbknnR/old/bbknnR.Rcheck/00LOCK-bbknnR/00new/bbknnR/libs
-** R
-...
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘panc8_small’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bbknnR’
-* removing ‘/tmp/workdir/bbknnR/old/bbknnR.Rcheck/bbknnR’
-
-
-```
-# bbmix
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/bbmix
-* Date/Publication: 2023-07-06 14:00:09 UTC
-* Number of recursive dependencies: 78
-
-Run `revdepcheck::cloud_details(, "bbmix")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bbmix’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bbmix/new/bbmix.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bbmix’ ...
-** package ‘bbmix’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘bbmix’
-* removing ‘/tmp/workdir/bbmix/new/bbmix.Rcheck/bbmix’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bbmix’ ...
-** package ‘bbmix’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(x) : there is no package called ‘rstantools’
-Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘bbmix’
-* removing ‘/tmp/workdir/bbmix/old/bbmix.Rcheck/bbmix’
-
-
-```
-# BCClong
-
-
-
-* Version: 1.0.3
-* GitHub: NA
-* Source code: https://github.com/cran/BCClong
-* Date/Publication: 2024-06-24 00:00:02 UTC
-* Number of recursive dependencies: 145
-
-Run `revdepcheck::cloud_details(, "BCClong")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BCClong’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BCClong’ ...
-** package ‘BCClong’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BCClong’
-* removing ‘/tmp/workdir/BCClong/new/BCClong.Rcheck/BCClong’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BCClong’ ...
-** package ‘BCClong’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c BCC.cpp -o BCC.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Likelihood.cpp -o Likelihood.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c c_which.cpp -o c_which.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BCClong.so BCC.o Likelihood.o RcppExports.o c_which.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BCClong’
-* removing ‘/tmp/workdir/BCClong/old/BCClong.Rcheck/BCClong’
-
-
-```
-# BFpack
-
-
-
-* Version: 1.3.0
-* GitHub: https://github.com/jomulder/BFpack
-* Source code: https://github.com/cran/BFpack
-* Date/Publication: 2024-06-19 10:50:02 UTC
-* Number of recursive dependencies: 106
-
-Run `revdepcheck::cloud_details(, "BFpack")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BFpack’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BFpack’ ...
-** package ‘BFpack’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o
-gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o
-gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BFpack’
-* removing ‘/tmp/workdir/BFpack/new/BFpack.Rcheck/BFpack’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BFpack’ ...
-** package ‘BFpack’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using Fortran compiler: ‘GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c BFpack_init.c -o BFpack_init.o
-gfortran -fpic -g -O2 -c bct_mixedordinal.f90 -o bct_mixedordinal.o
-gfortran -fpic -g -O2 -c bct_prior.f90 -o bct_prior.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o BFpack.so BFpack_init.o bct_mixedordinal.o bct_prior.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BFpack’
-* removing ‘/tmp/workdir/BFpack/old/BFpack.Rcheck/BFpack’
-
-
-```
-# BGGM
-
-
-
-* Version: 2.1.3
-* GitHub: https://github.com/donaldRwilliams/BGGM
-* Source code: https://github.com/cran/BGGM
-* Date/Publication: 2024-07-05 20:30:02 UTC
-* Number of recursive dependencies: 209
-
-Run `revdepcheck::cloud_details(, "BGGM")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BGGM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BGGM’ ...
-** package ‘BGGM’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BGGM’
-* removing ‘/tmp/workdir/BGGM/new/BGGM.Rcheck/BGGM’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BGGM’ ...
-** package ‘BGGM’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘BGGM’
-* removing ‘/tmp/workdir/BGGM/old/BGGM.Rcheck/BGGM’
-
-
-```
-# biosensors.usc
-
-
-
-* Version: 1.0
-* GitHub: NA
-* Source code: https://github.com/cran/biosensors.usc
-* Date/Publication: 2022-05-05 05:40:02 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "biosensors.usc")` for more info
-
-
-
-## In both
-
-* checking whether package ‘biosensors.usc’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/biosensors.usc/new/biosensors.usc.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘biosensors.usc’ ...
-** package ‘biosensors.usc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include -fpic -g -O2 -c biosensors.usc.cpp -o biosensors.usc.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o biosensors.usc.so biosensors.usc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/biosensors.usc/new/biosensors.usc.Rcheck/00LOCK-biosensors.usc/00new/biosensors.usc/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘biosensors.usc’
-* removing ‘/tmp/workdir/biosensors.usc/new/biosensors.usc.Rcheck/biosensors.usc’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘biosensors.usc’ ...
-** package ‘biosensors.usc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include -fpic -g -O2 -c biosensors.usc.cpp -o biosensors.usc.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o biosensors.usc.so biosensors.usc.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/biosensors.usc/old/biosensors.usc.Rcheck/00LOCK-biosensors.usc/00new/biosensors.usc/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.1 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘biosensors.usc’
-* removing ‘/tmp/workdir/biosensors.usc/old/biosensors.usc.Rcheck/biosensors.usc’
-
-
-```
-# bmstdr
-
-
-
-* Version: 0.7.9
-* GitHub: https://github.com/sujit-sahu/bmstdr
-* Source code: https://github.com/cran/bmstdr
-* Date/Publication: 2023-12-18 15:00:02 UTC
-* Number of recursive dependencies: 216
-
-Run `revdepcheck::cloud_details(, "bmstdr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bmstdr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bmstdr’ ...
-** package ‘bmstdr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bmstdr’
-* removing ‘/tmp/workdir/bmstdr/new/bmstdr.Rcheck/bmstdr’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bmstdr’ ...
-** package ‘bmstdr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bmstdr’
-* removing ‘/tmp/workdir/bmstdr/old/bmstdr.Rcheck/bmstdr’
-
-
-```
-# bndovb
-
-
-
-* Version: 1.1
-* GitHub: NA
-* Source code: https://github.com/cran/bndovb
-* Date/Publication: 2021-07-30 17:40:02 UTC
-* Number of recursive dependencies: 53
-
-Run `revdepcheck::cloud_details(, "bndovb")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bndovb’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bndovb/new/bndovb.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bndovb’ ...
-** package ‘bndovb’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bndovb’
-* removing ‘/tmp/workdir/bndovb/new/bndovb.Rcheck/bndovb’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bndovb’ ...
-** package ‘bndovb’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘bndovb’
-* removing ‘/tmp/workdir/bndovb/old/bndovb.Rcheck/bndovb’
-
-
-```
-# bsub
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/jokergoo/bsub
-* Source code: https://github.com/cran/bsub
-* Date/Publication: 2021-07-01 15:50:10 UTC
-* Number of recursive dependencies: 79
-
-Run `revdepcheck::cloud_details(, "bsub")` for more info
-
-
-
-## In both
-
-* checking whether package ‘bsub’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/bsub/new/bsub.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bsub’ ...
-** package ‘bsub’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘bsub’
-* removing ‘/tmp/workdir/bsub/new/bsub.Rcheck/bsub’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bsub’ ...
-** package ‘bsub’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘bsub’
-* removing ‘/tmp/workdir/bsub/old/bsub.Rcheck/bsub’
-
-
-```
-# CACIMAR
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/jiang-junyao/CACIMAR
-* Source code: https://github.com/cran/CACIMAR
-* Date/Publication: 2022-05-18 08:20:02 UTC
-* Number of recursive dependencies: 162
-
-Run `revdepcheck::cloud_details(, "CACIMAR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CACIMAR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CACIMAR’ ...
-** package ‘CACIMAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘CACIMAR’
-* removing ‘/tmp/workdir/CACIMAR/new/CACIMAR.Rcheck/CACIMAR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CACIMAR’ ...
-** package ‘CACIMAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘CACIMAR’
-* removing ‘/tmp/workdir/CACIMAR/old/CACIMAR.Rcheck/CACIMAR’
-
-
-```
-# caROC
-
-
-
-* Version: 0.1.5
-* GitHub: NA
-* Source code: https://github.com/cran/caROC
-* Date/Publication: 2021-04-02 08:20:03 UTC
-* Number of recursive dependencies: 34
-
-Run `revdepcheck::cloud_details(, "caROC")` for more info
-
-
-
-## In both
-
-* checking whether package ‘caROC’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/caROC/new/caROC.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘caROC’ ...
-** package ‘caROC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘caROC’
-* removing ‘/tmp/workdir/caROC/new/caROC.Rcheck/caROC’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘caROC’ ...
-** package ‘caROC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘caROC’
-* removing ‘/tmp/workdir/caROC/old/caROC.Rcheck/caROC’
-
-
-```
-# CGPfunctions
-
-
-
-* Version: 0.6.3
-* GitHub: https://github.com/ibecav/CGPfunctions
-* Source code: https://github.com/cran/CGPfunctions
-* Date/Publication: 2020-11-12 14:50:09 UTC
-* Number of recursive dependencies: 148
-
-Run `revdepcheck::cloud_details(, "CGPfunctions")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CGPfunctions’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CGPfunctions’ ...
-** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘CGPfunctions’
-* removing ‘/tmp/workdir/CGPfunctions/new/CGPfunctions.Rcheck/CGPfunctions’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CGPfunctions’ ...
-** package ‘CGPfunctions’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘CGPfunctions’
-* removing ‘/tmp/workdir/CGPfunctions/old/CGPfunctions.Rcheck/CGPfunctions’
-
-
-```
-# chemodiv
-
-
-
-* Version: 0.3.0
-* GitHub: https://github.com/hpetren/chemodiv
-* Source code: https://github.com/cran/chemodiv
-* Date/Publication: 2023-08-17 17:52:33 UTC
-* Number of recursive dependencies: 170
-
-Run `revdepcheck::cloud_details(, "chemodiv")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/chemodiv/new/chemodiv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘chemodiv/DESCRIPTION’ ... OK
-...
-* this is package ‘chemodiv’ version ‘0.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'fmcsR', 'ChemmineR'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/chemodiv/old/chemodiv.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘chemodiv/DESCRIPTION’ ... OK
-...
-* this is package ‘chemodiv’ version ‘0.3.0’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'fmcsR', 'ChemmineR'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# chicane
-
-
-
-* Version: 0.1.8
-* GitHub: NA
-* Source code: https://github.com/cran/chicane
-* Date/Publication: 2021-11-06 15:00:16 UTC
-* Number of recursive dependencies: 177
-
-Run `revdepcheck::cloud_details(, "chicane")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/chicane/new/chicane.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘chicane/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘Getting_Started.Rmd’ using ‘UTF-8’... OK
- ‘Visualising_Interactions.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/chicane/old/chicane.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘chicane/DESCRIPTION’ ... OK
-...
-* checking tests ... OK
- Running ‘testthat.R’
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘Getting_Started.Rmd’ using ‘UTF-8’... OK
- ‘Visualising_Interactions.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-# chipPCR
-
-
-
-* Version: 1.0-2
-* GitHub: https://github.com/PCRuniversum/chipPCR
-* Source code: https://github.com/cran/chipPCR
-* Date/Publication: 2021-03-05 07:50:03 UTC
-* Number of recursive dependencies: 141
-
-Run `revdepcheck::cloud_details(, "chipPCR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘chipPCR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘chipPCR’ ...
-** package ‘chipPCR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘chipPCR’
-* removing ‘/tmp/workdir/chipPCR/new/chipPCR.Rcheck/chipPCR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘chipPCR’ ...
-** package ‘chipPCR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘chipPCR’
-* removing ‘/tmp/workdir/chipPCR/old/chipPCR.Rcheck/chipPCR’
-
-
-```
-# cinaR
-
-
-
-* Version: 0.2.3
-* GitHub: https://github.com/eonurk/cinaR
-* Source code: https://github.com/cran/cinaR
-* Date/Publication: 2022-05-18 14:00:09 UTC
-* Number of recursive dependencies: 177
-
-Run `revdepcheck::cloud_details(, "cinaR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/cinaR/new/cinaR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cinaR/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
- 'TxDb.Hsapiens.UCSC.hg19.knownGene',
- 'TxDb.Mmusculus.UCSC.mm10.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/cinaR/old/cinaR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cinaR/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'ChIPseeker', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
- 'TxDb.Hsapiens.UCSC.hg19.knownGene',
- 'TxDb.Mmusculus.UCSC.mm10.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# cmprskcoxmsm
-
-
-
-* Version: 0.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/cmprskcoxmsm
-* Date/Publication: 2021-09-04 05:50:02 UTC
-* Number of recursive dependencies: 71
-
-Run `revdepcheck::cloud_details(, "cmprskcoxmsm")` for more info
-
-
-
-## In both
-
-* checking whether package ‘cmprskcoxmsm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘cmprskcoxmsm’ ...
-** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘cmprskcoxmsm’
-* removing ‘/tmp/workdir/cmprskcoxmsm/new/cmprskcoxmsm.Rcheck/cmprskcoxmsm’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘cmprskcoxmsm’ ...
-** package ‘cmprskcoxmsm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘cmprskcoxmsm’
-* removing ‘/tmp/workdir/cmprskcoxmsm/old/cmprskcoxmsm.Rcheck/cmprskcoxmsm’
-
-
-```
-# CNVScope
-
-
-
-* Version: 3.7.2
-* GitHub: https://github.com/jamesdalg/CNVScope
-* Source code: https://github.com/cran/CNVScope
-* Date/Publication: 2022-03-30 23:40:08 UTC
-* Number of recursive dependencies: 206
-
-Run `revdepcheck::cloud_details(, "CNVScope")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/CNVScope/new/CNVScope.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CNVScope/DESCRIPTION’ ... OK
-...
-Packages required but not available: 'GenomicInteractions', 'rtracklayer'
-
-Packages suggested but not available for checking:
- 'ComplexHeatmap', 'HiCseg', 'GenomicFeatures',
- 'BSgenome.Hsapiens.UCSC.hg19'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/CNVScope/old/CNVScope.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CNVScope/DESCRIPTION’ ... OK
-...
-Packages required but not available: 'GenomicInteractions', 'rtracklayer'
-
-Packages suggested but not available for checking:
- 'ComplexHeatmap', 'HiCseg', 'GenomicFeatures',
- 'BSgenome.Hsapiens.UCSC.hg19'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# coarseDataTools
-
-
-
-* Version: 0.6-6
-* GitHub: NA
-* Source code: https://github.com/cran/coarseDataTools
-* Date/Publication: 2021-12-09 17:20:05 UTC
-* Number of recursive dependencies: 17
-
-Run `revdepcheck::cloud_details(, "coarseDataTools")` for more info
-
-
-
-## In both
-
-* checking whether package ‘coarseDataTools’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘coarseDataTools’ ...
-** package ‘coarseDataTools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘coarseDataTools’
-* removing ‘/tmp/workdir/coarseDataTools/new/coarseDataTools.Rcheck/coarseDataTools’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘coarseDataTools’ ...
-** package ‘coarseDataTools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘coarseDataTools’
-* removing ‘/tmp/workdir/coarseDataTools/old/coarseDataTools.Rcheck/coarseDataTools’
-
-
-```
-# COMBO
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/COMBO
-* Date/Publication: 2024-07-06 22:22:08 UTC
-* Number of recursive dependencies: 123
-
-Run `revdepcheck::cloud_details(, "COMBO")` for more info
-
-
-
-## In both
-
-* checking whether package ‘COMBO’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘COMBO’ ...
-** package ‘COMBO’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘COMBO’
-* removing ‘/tmp/workdir/COMBO/new/COMBO.Rcheck/COMBO’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘COMBO’ ...
-** package ‘COMBO’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘COMBO’
-* removing ‘/tmp/workdir/COMBO/old/COMBO.Rcheck/COMBO’
-
-
-```
-# COMMA
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/COMMA
-* Date/Publication: 2024-07-21 10:10:05 UTC
-* Number of recursive dependencies: 72
-
-Run `revdepcheck::cloud_details(, "COMMA")` for more info
-
-
-
-## In both
-
-* checking whether package ‘COMMA’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘COMMA’ ...
-** package ‘COMMA’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘COMMA’
-* removing ‘/tmp/workdir/COMMA/new/COMMA.Rcheck/COMMA’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘COMMA’ ...
-** package ‘COMMA’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘COMMA’
-* removing ‘/tmp/workdir/COMMA/old/COMMA.Rcheck/COMMA’
-
-
-```
-# ConnectednessApproach
-
-
-
-* Version: 1.0.3
-* GitHub: NA
-* Source code: https://github.com/cran/ConnectednessApproach
-* Date/Publication: 2024-06-16 16:20:02 UTC
-* Number of recursive dependencies: 131
-
-Run `revdepcheck::cloud_details(, "ConnectednessApproach")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ConnectednessApproach’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ConnectednessApproach’ ...
-** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ConnectednessApproach’
-* removing ‘/tmp/workdir/ConnectednessApproach/new/ConnectednessApproach.Rcheck/ConnectednessApproach’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ConnectednessApproach’ ...
-** package ‘ConnectednessApproach’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ConnectednessApproach’
-* removing ‘/tmp/workdir/ConnectednessApproach/old/ConnectednessApproach.Rcheck/ConnectednessApproach’
-
-
-```
-# conos
-
-
-
-* Version: 1.5.2
-* GitHub: https://github.com/kharchenkolab/conos
-* Source code: https://github.com/cran/conos
-* Date/Publication: 2024-02-26 19:30:05 UTC
-* Number of recursive dependencies: 240
-
-Run `revdepcheck::cloud_details(, "conos")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/conos/new/conos.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘conos/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Package suggested but not available for checking: ‘pagoda2’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/conos/old/conos.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘conos/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Package suggested but not available for checking: ‘pagoda2’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# cotram
-
-
-
-* Version: 0.5-1
-* GitHub: NA
-* Source code: https://github.com/cran/cotram
-* Date/Publication: 2024-07-19 10:20:03 UTC
-* Number of recursive dependencies: 32
-
-Run `revdepcheck::cloud_details(, "cotram")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/cotram/new/cotram.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cotram/DESCRIPTION’ ... OK
-...
-* this is package ‘cotram’ version ‘0.5-1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'tram', 'mlt'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/cotram/old/cotram.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cotram/DESCRIPTION’ ... OK
-...
-* this is package ‘cotram’ version ‘0.5-1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'tram', 'mlt'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# countSTAR
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/bking124/countSTAR
-* Source code: https://github.com/cran/countSTAR
-* Date/Publication: 2023-06-30 18:30:08 UTC
-* Number of recursive dependencies: 99
-
-Run `revdepcheck::cloud_details(, "countSTAR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘countSTAR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/countSTAR/new/countSTAR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘countSTAR’ ...
-** package ‘countSTAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c rounded_source.cpp -o rounded_source.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o countSTAR.so RcppExports.o rounded_source.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/countSTAR/new/countSTAR.Rcheck/00LOCK-countSTAR/00new/countSTAR/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘countSTAR’
-* removing ‘/tmp/workdir/countSTAR/new/countSTAR.Rcheck/countSTAR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘countSTAR’ ...
-** package ‘countSTAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c rounded_source.cpp -o rounded_source.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o countSTAR.so RcppExports.o rounded_source.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/countSTAR/old/countSTAR.Rcheck/00LOCK-countSTAR/00new/countSTAR/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘countSTAR’
-* removing ‘/tmp/workdir/countSTAR/old/countSTAR.Rcheck/countSTAR’
-
-
-```
-# crosstalkr
-
-
-
-* Version: 1.0.5
-* GitHub: NA
-* Source code: https://github.com/cran/crosstalkr
-* Date/Publication: 2024-05-17 11:40:09 UTC
-* Number of recursive dependencies: 164
-
-Run `revdepcheck::cloud_details(, "crosstalkr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/crosstalkr/new/crosstalkr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘crosstalkr/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ensembldb’
-
-Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/crosstalkr/old/crosstalkr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘crosstalkr/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ensembldb’
-
-Package suggested but not available for checking: ‘EnsDb.Hsapiens.v86’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# CSCNet
-
-
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/CSCNet
-* Date/Publication: 2022-11-08 18:50:02 UTC
-* Number of recursive dependencies: 171
-
-Run `revdepcheck::cloud_details(, "CSCNet")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CSCNet’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/CSCNet/new/CSCNet.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CSCNet’ ...
-** package ‘CSCNet’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘CSCNet’
-* removing ‘/tmp/workdir/CSCNet/new/CSCNet.Rcheck/CSCNet’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CSCNet’ ...
-** package ‘CSCNet’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘CSCNet’
-* removing ‘/tmp/workdir/CSCNet/old/CSCNet.Rcheck/CSCNet’
-
-
-```
-# ctsem
-
-
-
-* Version: 3.10.1
-* GitHub: https://github.com/cdriveraus/ctsem
-* Source code: https://github.com/cran/ctsem
-* Date/Publication: 2024-08-19 14:40:06 UTC
-* Number of recursive dependencies: 158
-
-Run `revdepcheck::cloud_details(, "ctsem")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ctsem’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ctsm.o] Error 1
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
-
-
-```
-# dataone
-
-
-
-* Version: 2.2.2
-* GitHub: https://github.com/DataONEorg/rdataone
-* Source code: https://github.com/cran/dataone
-* Date/Publication: 2022-06-10 19:30:02 UTC
-* Number of recursive dependencies: 69
-
-Run `revdepcheck::cloud_details(, "dataone")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dataone’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/dataone/new/dataone.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dataone’ ...
-** package ‘dataone’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘dataone’
-* removing ‘/tmp/workdir/dataone/new/dataone.Rcheck/dataone’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dataone’ ...
-** package ‘dataone’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘dataone’
-* removing ‘/tmp/workdir/dataone/old/dataone.Rcheck/dataone’
-
-
-```
-# datapack
-
-
-
-* Version: 1.4.1
-* GitHub: https://github.com/ropensci/datapack
-* Source code: https://github.com/cran/datapack
-* Date/Publication: 2022-06-10 19:40:01 UTC
-* Number of recursive dependencies: 68
-
-Run `revdepcheck::cloud_details(, "datapack")` for more info
-
-
-
-## In both
-
-* checking whether package ‘datapack’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/datapack/new/datapack.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘datapack’ ...
-** package ‘datapack’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘datapack’
-* removing ‘/tmp/workdir/datapack/new/datapack.Rcheck/datapack’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘datapack’ ...
-** package ‘datapack’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘datapack’
-* removing ‘/tmp/workdir/datapack/old/datapack.Rcheck/datapack’
-
-
-```
-# deeptrafo
-
-
-
-* Version: 0.1-1
-* GitHub: NA
-* Source code: https://github.com/cran/deeptrafo
-* Date/Publication: 2022-11-22 09:50:02 UTC
-* Number of recursive dependencies: 96
-
-Run `revdepcheck::cloud_details(, "deeptrafo")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/new/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/deeptrafo/old/deeptrafo.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘deeptrafo/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'cotram'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# diveMove
-
-
-
-* Version: 1.6.2
-* GitHub: https://github.com/spluque/diveMove
-* Source code: https://github.com/cran/diveMove
-* Date/Publication: 2024-01-23 22:02:47 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "diveMove")` for more info
-
-
-
-## In both
-
-* checking whether package ‘diveMove’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/diveMove/new/diveMove.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘diveMove’ ...
-** package ‘diveMove’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diveMove_init.c -o diveMove_init.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c run_quantile.c -o run_quantile.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o diveMove.so diveMove_init.o run_quantile.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/diveMove/new/diveMove.Rcheck/00LOCK-diveMove/00new/diveMove/libs
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘diveMove’
-* removing ‘/tmp/workdir/diveMove/new/diveMove.Rcheck/diveMove’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘diveMove’ ...
-** package ‘diveMove’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diveMove_init.c -o diveMove_init.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c run_quantile.c -o run_quantile.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o diveMove.so diveMove_init.o run_quantile.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/diveMove/old/diveMove.Rcheck/00LOCK-diveMove/00new/diveMove/libs
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘diveMove’
-* removing ‘/tmp/workdir/diveMove/old/diveMove.Rcheck/diveMove’
-
-
-```
-# do
-
-
-
-* Version: 2.0.0.0
-* GitHub: https://github.com/yikeshu0611/do
-* Source code: https://github.com/cran/do
-* Date/Publication: 2021-08-03 11:40:02 UTC
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "do")` for more info
-
-
-
-## In both
-
-* checking whether package ‘do’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/do/new/do.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘do’ ...
-** package ‘do’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘.__T__[:base’ is not exported by 'namespace:data.table'
-Execution halted
-ERROR: lazy loading failed for package ‘do’
-* removing ‘/tmp/workdir/do/new/do.Rcheck/do’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘do’ ...
-** package ‘do’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘.__T__[:base’ is not exported by 'namespace:data.table'
-Execution halted
-ERROR: lazy loading failed for package ‘do’
-* removing ‘/tmp/workdir/do/old/do.Rcheck/do’
-
-
-```
-# DR.SC
-
-
-
-* Version: 3.4
-* GitHub: https://github.com/feiyoung/DR.SC
-* Source code: https://github.com/cran/DR.SC
-* Date/Publication: 2024-03-19 08:40:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "DR.SC")` for more info
-
-
-
-## In both
-
-* checking whether package ‘DR.SC’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/new/DR.SC.Rcheck/DR.SC’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DR.SC’ ...
-** package ‘DR.SC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c getNB_fast.cpp -o getNB_fast.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job.cpp -o mt_paral_job.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD -fpic -g -O2 -c mt_paral_job2.cpp -o mt_paral_job2.o
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘DR.SC’
-* removing ‘/tmp/workdir/DR.SC/old/DR.SC.Rcheck/DR.SC’
-
-
-```
-# driveR
-
-
-
-* Version: 0.4.1
-* GitHub: https://github.com/egeulgen/driveR
-* Source code: https://github.com/cran/driveR
-* Date/Publication: 2023-08-19 14:02:36 UTC
-* Number of recursive dependencies: 166
-
-Run `revdepcheck::cloud_details(, "driveR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/driveR/new/driveR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘driveR/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene',
- 'TxDb.Hsapiens.UCSC.hg38.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/driveR/old/driveR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘driveR/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene',
- 'TxDb.Hsapiens.UCSC.hg38.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# drtmle
-
-
-
-* Version: 1.1.2
-* GitHub: https://github.com/benkeser/drtmle
-* Source code: https://github.com/cran/drtmle
-* Date/Publication: 2023-01-05 19:50:02 UTC
-* Number of recursive dependencies: 81
-
-Run `revdepcheck::cloud_details(, "drtmle")` for more info
-
-
-
-## In both
-
-* checking whether package ‘drtmle’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘drtmle’ ...
-** package ‘drtmle’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘drtmle’
-* removing ‘/tmp/workdir/drtmle/new/drtmle.Rcheck/drtmle’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘drtmle’ ...
-** package ‘drtmle’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘drtmle’
-* removing ‘/tmp/workdir/drtmle/old/drtmle.Rcheck/drtmle’
-
-
-```
-# DrugSim2DR
-
-
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/DrugSim2DR
-* Date/Publication: 2023-08-10 04:50:02 UTC
-* Number of recursive dependencies: 89
-
-Run `revdepcheck::cloud_details(, "DrugSim2DR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/DrugSim2DR/new/DrugSim2DR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DrugSim2DR/DESCRIPTION’ ... OK
-...
-* this is package ‘DrugSim2DR’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChemmineR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/DrugSim2DR/old/DrugSim2DR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DrugSim2DR/DESCRIPTION’ ... OK
-...
-* this is package ‘DrugSim2DR’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChemmineR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# DRviaSPCN
-
-
-
-* Version: 0.1.4
-* GitHub: NA
-* Source code: https://github.com/cran/DRviaSPCN
-* Date/Publication: 2024-01-13 05:00:02 UTC
-* Number of recursive dependencies: 180
-
-Run `revdepcheck::cloud_details(, "DRviaSPCN")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/DRviaSPCN/new/DRviaSPCN.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK
-...
-* this is package ‘DRviaSPCN’ version ‘0.1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChemmineR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/DRviaSPCN/old/DRviaSPCN.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘DRviaSPCN/DESCRIPTION’ ... OK
-...
-* this is package ‘DRviaSPCN’ version ‘0.1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘ChemmineR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# ech
-
-
-
-* Version: 0.1.3
-* GitHub: NA
-* Source code: https://github.com/cran/ech
-* Date/Publication: 2023-05-11 08:50:17 UTC
-* Number of recursive dependencies: 126
-
-Run `revdepcheck::cloud_details(, "ech")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ech’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ech/new/ech.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ech’ ...
-** package ‘ech’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘ech’
-* removing ‘/tmp/workdir/ech/new/ech.Rcheck/ech’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ech’ ...
-** package ‘ech’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘ech’
-* removing ‘/tmp/workdir/ech/old/ech.Rcheck/ech’
-
-
-```
-# EcoEnsemble
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/CefasRepRes/EcoEnsemble
-* Source code: https://github.com/cran/EcoEnsemble
-* Date/Publication: 2024-08-19 17:20:06 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info
-
-
-
-## In both
-
-* checking whether package ‘EcoEnsemble’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘EcoEnsemble’ ...
-** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_withdrivers_namespace::model_ensemble_model_hierarchical_withdrivers; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical_withdrivers.o] Error 1
-ERROR: compilation failed for package ‘EcoEnsemble’
-* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘EcoEnsemble’ ...
-** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_withdrivers_namespace::model_ensemble_model_hierarchical_withdrivers; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_ensemble_model_hierarchical_withdrivers.o] Error 1
-ERROR: compilation failed for package ‘EcoEnsemble’
-* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’
-
-
-```
-# ecolottery
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/frmunoz/ecolottery
-* Source code: https://github.com/cran/ecolottery
-* Date/Publication: 2017-07-03 11:01:29 UTC
-* Number of recursive dependencies: 88
-
-Run `revdepcheck::cloud_details(, "ecolottery")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ecolottery’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ecolottery’ ...
-** package ‘ecolottery’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ecolottery’
-* removing ‘/tmp/workdir/ecolottery/new/ecolottery.Rcheck/ecolottery’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ecolottery’ ...
-** package ‘ecolottery’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘ecolottery’
-* removing ‘/tmp/workdir/ecolottery/old/ecolottery.Rcheck/ecolottery’
-
-
-```
-# EdSurvey
-
-
-
-* Version: 4.0.7
-* GitHub: https://github.com/American-Institutes-for-Research/EdSurvey
-* Source code: https://github.com/cran/EdSurvey
-* Date/Publication: 2024-06-27 14:50:14 UTC
-* Number of recursive dependencies: 128
-
-Run `revdepcheck::cloud_details(, "EdSurvey")` for more info
-
-
-
-## In both
-
-* checking whether package ‘EdSurvey’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘EdSurvey’ ...
-** package ‘EdSurvey’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘EdSurvey’
-* removing ‘/tmp/workdir/EdSurvey/new/EdSurvey.Rcheck/EdSurvey’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘EdSurvey’ ...
-** package ‘EdSurvey’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘EdSurvey’
-* removing ‘/tmp/workdir/EdSurvey/old/EdSurvey.Rcheck/EdSurvey’
-
-
-```
-# EpiEstim
-
-
-
-* Version: 2.2-4
-* GitHub: https://github.com/mrc-ide/EpiEstim
-* Source code: https://github.com/cran/EpiEstim
-* Date/Publication: 2021-01-07 16:20:10 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "EpiEstim")` for more info
-
-
-
-## In both
-
-* checking whether package ‘EpiEstim’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘EpiEstim’ ...
-** package ‘EpiEstim’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘EpiEstim’
-* removing ‘/tmp/workdir/EpiEstim/new/EpiEstim.Rcheck/EpiEstim’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘EpiEstim’ ...
-** package ‘EpiEstim’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘EpiEstim’
-* removing ‘/tmp/workdir/EpiEstim/old/EpiEstim.Rcheck/EpiEstim’
-
-
-```
-# erah
-
-
-
-* Version: 2.0.1
-* GitHub: https://github.com/xdomingoal/erah-devel
-* Source code: https://github.com/cran/erah
-* Date/Publication: 2023-12-20 10:10:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "erah")` for more info
-
-
-
-## In both
-
-* checking whether package ‘erah’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/erah/new/erah.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘erah’ ...
-** package ‘erah’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/erah/new/erah.Rcheck/00LOCK-erah/00new/erah/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘erah’
-* removing ‘/tmp/workdir/erah/new/erah.Rcheck/erah’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘erah’ ...
-** package ‘erah’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-gcc -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o
-gcc -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o erah.so registerDynamicSymbol.o runfunc.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/erah/old/erah.Rcheck/00LOCK-erah/00new/erah/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘erah’
-* removing ‘/tmp/workdir/erah/old/erah.Rcheck/erah’
-
-
-```
-# EWSmethods
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/EWSmethods
-* Number of recursive dependencies: 140
-
-Run `revdepcheck::cloud_details(, "EWSmethods")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# FAIRmaterials
-
-
-
-* Version: 0.4.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/FAIRmaterials
-* Date/Publication: 2024-06-27 15:40:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdepcheck::cloud_details(, "FAIRmaterials")` for more info
-
-
-
-## In both
-
-* checking whether package ‘FAIRmaterials’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘FAIRmaterials’ ...
-** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘FAIRmaterials’
-* removing ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/FAIRmaterials’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘FAIRmaterials’ ...
-** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘FAIRmaterials’
-* removing ‘/tmp/workdir/FAIRmaterials/old/FAIRmaterials.Rcheck/FAIRmaterials’
-
-
-```
-# FREEtree
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/FREEtree
-* Date/Publication: 2020-06-25 15:00:03 UTC
-* Number of recursive dependencies: 134
-
-Run `revdepcheck::cloud_details(, "FREEtree")` for more info
-
-
-
-## In both
-
-* checking whether package ‘FREEtree’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘FREEtree’ ...
-** package ‘FREEtree’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘FREEtree’
-* removing ‘/tmp/workdir/FREEtree/new/FREEtree.Rcheck/FREEtree’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘FREEtree’ ...
-** package ‘FREEtree’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘FREEtree’
-* removing ‘/tmp/workdir/FREEtree/old/FREEtree.Rcheck/FREEtree’
-
-
-```
-# GALLO
-
-
-
-* Version: 1.5
-* GitHub: NA
-* Source code: https://github.com/cran/GALLO
-* Date/Publication: 2024-06-04 15:30:20 UTC
-* Number of recursive dependencies: 142
-
-Run `revdepcheck::cloud_details(, "GALLO")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/GALLO/new/GALLO.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GALLO/DESCRIPTION’ ... OK
-...
-* this is package ‘GALLO’ version ‘1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/GALLO/old/GALLO.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GALLO/DESCRIPTION’ ... OK
-...
-* this is package ‘GALLO’ version ‘1.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# gap
-
-
-
-* Version: 1.6
-* GitHub: https://github.com/jinghuazhao/R
-* Source code: https://github.com/cran/gap
-* Date/Publication: 2024-08-27 04:40:06 UTC
-* Number of recursive dependencies: 199
-
-Run `revdepcheck::cloud_details(, "gap")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/gap/new/gap.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘gap/DESCRIPTION’ ... OK
-...
---- failed re-building ‘jss.Rnw’
-
-SUMMARY: processing the following file failed:
- ‘jss.Rnw’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/gap/old/gap.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘gap/DESCRIPTION’ ... OK
-...
---- failed re-building ‘jss.Rnw’
-
-SUMMARY: processing the following file failed:
- ‘jss.Rnw’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-# geneHapR
-
-
-
-* Version: 1.2.4
-* GitHub: NA
-* Source code: https://github.com/cran/geneHapR
-* Date/Publication: 2024-03-01 14:32:40 UTC
-* Number of recursive dependencies: 180
-
-Run `revdepcheck::cloud_details(, "geneHapR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/geneHapR/new/geneHapR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘geneHapR/DESCRIPTION’ ... OK
-...
-* this is package ‘geneHapR’ version ‘1.2.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/geneHapR/old/geneHapR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘geneHapR/DESCRIPTION’ ... OK
-...
-* this is package ‘geneHapR’ version ‘1.2.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# GeneNMF
-
-
-
-* Version: 0.6.0
-* GitHub: https://github.com/carmonalab/GeneNMF
-* Source code: https://github.com/cran/GeneNMF
-* Date/Publication: 2024-07-22 08:30:02 UTC
-* Number of recursive dependencies: 161
-
-Run `revdepcheck::cloud_details(, "GeneNMF")` for more info
-
-
-
-## In both
-
-* checking whether package ‘GeneNMF’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘GeneNMF’ ...
-** package ‘GeneNMF’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘sampleObj’
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘sampleObj’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘GeneNMF’
-* removing ‘/tmp/workdir/GeneNMF/new/GeneNMF.Rcheck/GeneNMF’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘GeneNMF’ ...
-** package ‘GeneNMF’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘sampleObj’
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘sampleObj’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘GeneNMF’
-* removing ‘/tmp/workdir/GeneNMF/old/GeneNMF.Rcheck/GeneNMF’
-
-
-```
-# GeneSelectR
-
-
-
-* Version: 1.0.1
-* GitHub: https://github.com/dzhakparov/GeneSelectR
-* Source code: https://github.com/cran/GeneSelectR
-* Date/Publication: 2024-02-03 14:00:05 UTC
-* Number of recursive dependencies: 191
-
-Run `revdepcheck::cloud_details(, "GeneSelectR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/GeneSelectR/new/GeneSelectR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK
-...
-+ build_vignettes = FALSE)
-
- When sourcing ‘example.R’:
-Error: there is no package called ‘devtools’
-Execution halted
-
- ‘example.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/GeneSelectR/old/GeneSelectR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘GeneSelectR/DESCRIPTION’ ... OK
-...
-+ build_vignettes = FALSE)
-
- When sourcing ‘example.R’:
-Error: there is no package called ‘devtools’
-Execution halted
-
- ‘example.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-# geomorph
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/geomorph
-* Number of recursive dependencies: 72
-
-Run `revdepcheck::cloud_details(, "geomorph")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# gJLS2
-
-
-
-* Version: 0.2.0
-* GitHub: NA
-* Source code: https://github.com/cran/gJLS2
-* Date/Publication: 2021-09-30 09:00:05 UTC
-* Number of recursive dependencies: 45
-
-Run `revdepcheck::cloud_details(, "gJLS2")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gJLS2’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gJLS2’ ...
-** package ‘gJLS2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘gJLS2’
-* removing ‘/tmp/workdir/gJLS2/new/gJLS2.Rcheck/gJLS2’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gJLS2’ ...
-** package ‘gJLS2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘gJLS2’
-* removing ‘/tmp/workdir/gJLS2/old/gJLS2.Rcheck/gJLS2’
-
-
-```
-# gllvm
-
-
-
-* Version: 1.4.3
-* GitHub: https://github.com/JenniNiku/gllvm
-* Source code: https://github.com/cran/gllvm
-* Date/Publication: 2023-09-18 15:00:02 UTC
-* Number of recursive dependencies: 67
-
-Run `revdepcheck::cloud_details(, "gllvm")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gllvm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gllvm’ ...
-** package ‘gllvm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/opt/R/4.3.1/lib/R/site-library/TMB/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/TMB/include/TMB.hpp:92,
- from gllvm.cpp:2:
-...
-/opt/R/4.3.1/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1
-ERROR: compilation failed for package ‘gllvm’
-* removing ‘/tmp/workdir/gllvm/new/gllvm.Rcheck/gllvm’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gllvm’ ...
-** package ‘gllvm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/opt/R/4.3.1/lib/R/site-library/TMB/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c gllvm.cpp -o gllvm.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/TMB/include/TMB.hpp:92,
- from gllvm.cpp:2:
-...
-/opt/R/4.3.1/lib/R/site-library/TMB/include/tiny_ad/atomic.hpp:30:1: required from ‘void atomic::bessel_kOp::reverse(TMBad::ReverseArgs&) [with Type = double; int order = 3; int ninput = 2; int noutput = 8; long int mask = 9]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: required from ‘void TMBad::global::AddForwardMarkReverseMark::reverse(TMBad::ReverseArgs&) [with Type = double; OperatorBase = TMBad::global::AddIncrementDecrement > > >]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:57: required from ‘void TMBad::global::Complete::reverse(TMBad::ReverseArgs&) [with OperatorBase = atomic::bessel_kOp<3, 2, 8, 9>]’
-/opt/R/4.3.1/lib/R/site-library/TMB/include/TMBad/global.hpp:2134:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:200: gllvm.o] Error 1
-ERROR: compilation failed for package ‘gllvm’
-* removing ‘/tmp/workdir/gllvm/old/gllvm.Rcheck/gllvm’
-
-
-```
-# gmoTree
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/gmoTree
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "gmoTree")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# gpuR
-
-
-
-* Version: 2.0.6
-* GitHub: https://github.com/cdeterman/gpuR
-* Source code: https://github.com/cran/gpuR
-* Date/Publication: 2024-05-23 16:00:02 UTC
-* Number of recursive dependencies: 39
-
-Run `revdepcheck::cloud_details(, "gpuR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gpuR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gpuR’ ...
-** package ‘gpuR’ successfully unpacked and MD5 sums checked
-** using staged installation
-OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120
-Linux OS
-found OpenCL library
-Checking OpenCL C++ API
-OPENCL_INC not set, using default include directory /usr/include
-No OpenCL C++ API found, will use the headers contained in the package
-
-...
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’
-../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’
-../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR
-/usr/bin/ld: cannot find -lOpenCL: No such file or directory
-collect2: error: ld returned 1 exit status
-make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1
-ERROR: compilation failed for package ‘gpuR’
-* removing ‘/tmp/workdir/gpuR/new/gpuR.Rcheck/gpuR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gpuR’ ...
-** package ‘gpuR’ successfully unpacked and MD5 sums checked
-** using staged installation
-OPENCL_FLAGS not set, using default -DCL_HPP_MINIMUM_OPENCL_VERSION=110 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -DCL_HPP_TARGET_OPENCL_VERSION=120
-Linux OS
-found OpenCL library
-Checking OpenCL C++ API
-OPENCL_INC not set, using default include directory /usr/include
-No OpenCL C++ API found, will use the headers contained in the package
-
-...
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from ‘Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, 0, Eigen::OuterStride<> >, -1, 1, true>]’
-../inst/include/gpuR/dynEigenMat.hpp:192:30: required from ‘void dynEigenMat::setCol(SEXP, int) [with T = double; SEXP = SEXPREC*]’
-../inst/include/gpuR/dynEigenMat.hpp:383:16: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o gpuR.so RcppExports.o chol.o context.o custom_math.o device.o gpuEigenPtr.o gpuMatrix_igemm.o norm.o platform.o set_row_order.o solve.o synchronize.o trunc_gpuMat.o utils-vcl.o utils.o vclPtr.o vienna_blas1.o vienna_blas2.o vienna_blas3.o vienna_eigen.o vienna_qr.o vienna_stats.o vienna_svd.o -lOpenCL -L/opt/R/4.3.1/lib/R/lib -lR
-/usr/bin/ld: cannot find -lOpenCL: No such file or directory
-collect2: error: ld returned 1 exit status
-make: *** [/opt/R/4.3.1/lib/R/share/make/shlib.mk:10: gpuR.so] Error 1
-ERROR: compilation failed for package ‘gpuR’
-* removing ‘/tmp/workdir/gpuR/old/gpuR.Rcheck/gpuR’
-
-
-```
-# hettx
-
-
-
-* Version: 0.1.3
-* GitHub: https://github.com/bfifield/hettx
-* Source code: https://github.com/cran/hettx
-* Date/Publication: 2023-08-19 22:22:34 UTC
-* Number of recursive dependencies: 85
-
-Run `revdepcheck::cloud_details(, "hettx")` for more info
-
-
-
-## In both
-
-* checking whether package ‘hettx’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/hettx/new/hettx.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/new/hettx.Rcheck/hettx’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘hettx’ ...
-** package ‘hettx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘hettx’
-* removing ‘/tmp/workdir/hettx/old/hettx.Rcheck/hettx’
-
-
-```
-# Hmisc
-
-
-
-* Version: 5.1-3
-* GitHub: NA
-* Source code: https://github.com/cran/Hmisc
-* Date/Publication: 2024-05-28 07:10:02 UTC
-* Number of recursive dependencies: 170
-
-Run `revdepcheck::cloud_details(, "Hmisc")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/Hmisc/new/Hmisc.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Hmisc/DESCRIPTION’ ... OK
-...
-* checking for missing documentation entries ... OK
-* checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... OK
-* checking Rd contents ... OK
-* checking for unstated dependencies in examples ... OK
-* checking line endings in C/C++/Fortran sources/headers ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/Hmisc/old/Hmisc.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Hmisc/DESCRIPTION’ ... OK
-...
-* checking for missing documentation entries ... OK
-* checking for code/documentation mismatches ... OK
-* checking Rd \usage sections ... OK
-* checking Rd contents ... OK
-* checking for unstated dependencies in examples ... OK
-* checking line endings in C/C++/Fortran sources/headers ... OK
-* checking compiled code ... OK
-* checking examples ... OK
-* DONE
-Status: 4 NOTEs
-
-
-
-
-
-```
-# iClusterVB
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/AbdalkarimA/iClusterVB
-* Source code: https://github.com/cran/iClusterVB
-* Date/Publication: 2024-08-20 19:10:02 UTC
-* Number of recursive dependencies: 127
-
-Run `revdepcheck::cloud_details(, "iClusterVB")` for more info
-
-
-
-## In both
-
-* checking whether package ‘iClusterVB’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘iClusterVB’ ...
-** package ‘iClusterVB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘iClusterVB’
-* removing ‘/tmp/workdir/iClusterVB/new/iClusterVB.Rcheck/iClusterVB’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘iClusterVB’ ...
-** package ‘iClusterVB’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c CAVI_algorithms.cpp -o CAVI_algorithms.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o iClusterVB.so CAVI_algorithms.o RcppExports.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/00LOCK-iClusterVB/00new/iClusterVB/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘iClusterVB’
-* removing ‘/tmp/workdir/iClusterVB/old/iClusterVB.Rcheck/iClusterVB’
-
-
-```
-# iNZightPlots
-
-
-
-* Version: 2.15.3
-* GitHub: https://github.com/iNZightVIT/iNZightPlots
-* Source code: https://github.com/cran/iNZightPlots
-* Date/Publication: 2023-10-14 05:00:02 UTC
-* Number of recursive dependencies: 162
-
-Run `revdepcheck::cloud_details(, "iNZightPlots")` for more info
-
-
-
-## In both
-
-* checking whether package ‘iNZightPlots’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘iNZightPlots’ ...
-** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘iNZightPlots’
-* removing ‘/tmp/workdir/iNZightPlots/new/iNZightPlots.Rcheck/iNZightPlots’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘iNZightPlots’ ...
-** package ‘iNZightPlots’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘iNZightPlots’
-* removing ‘/tmp/workdir/iNZightPlots/old/iNZightPlots.Rcheck/iNZightPlots’
-
-
-```
-# IRexamples
-
-
-
-* Version: 0.0.4
-* GitHub: https://github.com/vinhdizzo/IRexamples
-* Source code: https://github.com/cran/IRexamples
-* Date/Publication: 2023-10-06 06:40:02 UTC
-* Number of recursive dependencies: 177
-
-Run `revdepcheck::cloud_details(, "IRexamples")` for more info
-
-
-
-## In both
-
-* checking whether package ‘IRexamples’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘IRexamples’ ...
-** package ‘IRexamples’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘IRexamples’
-* removing ‘/tmp/workdir/IRexamples/new/IRexamples.Rcheck/IRexamples’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘IRexamples’ ...
-** package ‘IRexamples’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘IRexamples’
-* removing ‘/tmp/workdir/IRexamples/old/IRexamples.Rcheck/IRexamples’
-
-
-```
-# isodistrreg
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/AlexanderHenzi/isodistrreg
-* Source code: https://github.com/cran/isodistrreg
-* Date/Publication: 2021-03-22 09:20:03 UTC
-* Number of recursive dependencies: 30
-
-Run `revdepcheck::cloud_details(, "isodistrreg")` for more info
-
-
-
-## In both
-
-* checking whether package ‘isodistrreg’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/isodistrreg/new/isodistrreg.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘isodistrreg’ ...
-** package ‘isodistrreg’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c idrHazard.cpp -o idrHazard.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isoCdf_sequential.cpp -o isoCdf_sequential.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pavaMatrix.cpp -o pavaMatrix.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o isodistrreg.so RcppExports.o idrHazard.o isoCdf_sequential.o pavaMatrix.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘isodistrreg’
-* removing ‘/tmp/workdir/isodistrreg/new/isodistrreg.Rcheck/isodistrreg’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘isodistrreg’ ...
-** package ‘isodistrreg’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c idrHazard.cpp -o idrHazard.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isoCdf_sequential.cpp -o isoCdf_sequential.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c pavaMatrix.cpp -o pavaMatrix.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o isodistrreg.so RcppExports.o idrHazard.o isoCdf_sequential.o pavaMatrix.o -L/opt/R/4.3.1/lib/R/lib -lR
-...
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘isodistrreg’
-* removing ‘/tmp/workdir/isodistrreg/old/isodistrreg.Rcheck/isodistrreg’
-
-
-```
-# joineRML
-
-
-
-* Version: 0.4.6
-* GitHub: https://github.com/graemeleehickey/joineRML
-* Source code: https://github.com/cran/joineRML
-* Date/Publication: 2023-01-20 04:50:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "joineRML")` for more info
-
-
-
-## In both
-
-* checking whether package ‘joineRML’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘joineRML’ ...
-** package ‘joineRML’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++11
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘joineRML’
-* removing ‘/tmp/workdir/joineRML/new/joineRML.Rcheck/joineRML’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘joineRML’ ...
-** package ‘joineRML’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++11
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c expW.cpp -o expW.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c gammaUpdate.cpp -o gammaUpdate.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘joineRML’
-* removing ‘/tmp/workdir/joineRML/old/joineRML.Rcheck/joineRML’
-
-
-```
-# kdml
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/kdml
-* Date/Publication: 2024-08-27 11:30:05 UTC
-* Number of recursive dependencies: 40
-
-Run `revdepcheck::cloud_details(, "kdml")` for more info
-
-
-
-## In both
-
-* checking whether package ‘kdml’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/kdml/new/kdml.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘kdml’ ...
-** package ‘kdml’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘kdml’
-* removing ‘/tmp/workdir/kdml/new/kdml.Rcheck/kdml’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘kdml’ ...
-** package ‘kdml’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘kdml’
-* removing ‘/tmp/workdir/kdml/old/kdml.Rcheck/kdml’
-
-
-```
-# kibior
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/regisoc/kibior
-* Source code: https://github.com/cran/kibior
-* Date/Publication: 2021-01-28 15:20:02 UTC
-* Number of recursive dependencies: 140
-
-Run `revdepcheck::cloud_details(, "kibior")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/kibior/new/kibior.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘kibior/DESCRIPTION’ ... OK
-...
-* this is package ‘kibior’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/kibior/old/kibior.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘kibior/DESCRIPTION’ ... OK
-...
-* this is package ‘kibior’ version ‘0.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rtracklayer’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# kstMatrix
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/kstMatrix
-* Number of recursive dependencies: 35
-
-Run `revdepcheck::cloud_details(, "kstMatrix")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# L2E
-
-
-
-* Version: 2.0
-* GitHub: NA
-* Source code: https://github.com/cran/L2E
-* Date/Publication: 2022-09-08 21:13:00 UTC
-* Number of recursive dependencies: 65
-
-Run `revdepcheck::cloud_details(, "L2E")` for more info
-
-
-
-## In both
-
-* checking whether package ‘L2E’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/L2E/new/L2E.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘L2E’ ...
-** package ‘L2E’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required
-Execution halted
-ERROR: lazy loading failed for package ‘L2E’
-* removing ‘/tmp/workdir/L2E/new/L2E.Rcheck/L2E’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘L2E’ ...
-** package ‘L2E’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘osqp’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.1 is required
-Execution halted
-ERROR: lazy loading failed for package ‘L2E’
-* removing ‘/tmp/workdir/L2E/old/L2E.Rcheck/L2E’
-
-
-```
-# lchemix
-
-
-
-* Version: 0.1.0
-* GitHub: https://github.com/wzhang17/lchemix
-* Source code: https://github.com/cran/lchemix
-* Date/Publication: 2020-02-28 11:50:02 UTC
-* Number of recursive dependencies: 37
-
-Run `revdepcheck::cloud_details(, "lchemix")` for more info
-
-
-
-## In both
-
-* checking whether package ‘lchemix’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/lchemix/new/lchemix.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘lchemix’ ...
-** package ‘lchemix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lchemix’
-* removing ‘/tmp/workdir/lchemix/new/lchemix.Rcheck/lchemix’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘lchemix’ ...
-** package ‘lchemix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lchemix’
-* removing ‘/tmp/workdir/lchemix/old/lchemix.Rcheck/lchemix’
-
-
-```
-# ldsep
-
-
-
-* Version: 2.1.5
-* GitHub: https://github.com/dcgerard/ldsep
-* Source code: https://github.com/cran/ldsep
-* Date/Publication: 2022-10-18 22:52:43 UTC
-* Number of recursive dependencies: 161
-
-Run `revdepcheck::cloud_details(, "ldsep")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ldsep/new/ldsep.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ldsep/DESCRIPTION’ ... OK
-...
-
- When sourcing ‘vcf.R’:
-Error: there is no package called ‘VariantAnnotation’
-Execution halted
-
- ‘fast.Rmd’ using ‘UTF-8’... OK
- ‘vcf.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 3 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ldsep/old/ldsep.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ldsep/DESCRIPTION’ ... OK
-...
-
- When sourcing ‘vcf.R’:
-Error: there is no package called ‘VariantAnnotation’
-Execution halted
-
- ‘fast.Rmd’ using ‘UTF-8’... OK
- ‘vcf.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 WARNING, 3 NOTEs
-
-
-
-
-
-```
-# locuszoomr
-
-
-
-* Version: 0.3.2
-* GitHub: https://github.com/myles-lewis/locuszoomr
-* Source code: https://github.com/cran/locuszoomr
-* Date/Publication: 2024-08-19 15:10:02 UTC
-* Number of recursive dependencies: 132
-
-Run `revdepcheck::cloud_details(, "locuszoomr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/locuszoomr/new/locuszoomr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘locuszoomr/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ensembldb', 'rtracklayer'
-
-Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/locuszoomr/old/locuszoomr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘locuszoomr/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ensembldb', 'rtracklayer'
-
-Package suggested but not available for checking: ‘EnsDb.Hsapiens.v75’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# loon.shiny
-
-
-
-* Version: 1.0.3
-* GitHub: NA
-* Source code: https://github.com/cran/loon.shiny
-* Date/Publication: 2022-10-08 15:30:02 UTC
-* Number of recursive dependencies: 136
-
-Run `revdepcheck::cloud_details(, "loon.shiny")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/loon.shiny/new/loon.shiny.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘loon.shiny/DESCRIPTION’ ... OK
-...
-* this is package ‘loon.shiny’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'loon.ggplot'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/loon.shiny/old/loon.shiny.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘loon.shiny/DESCRIPTION’ ... OK
-...
-* this is package ‘loon.shiny’ version ‘1.0.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'loon.ggplot'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# loon.tourr
-
-
-
-* Version: 0.1.4
-* GitHub: https://github.com/z267xu/loon.tourr
-* Source code: https://github.com/cran/loon.tourr
-* Date/Publication: 2024-04-09 09:40:02 UTC
-* Number of recursive dependencies: 127
-
-Run `revdepcheck::cloud_details(, "loon.tourr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/loon.tourr/new/loon.tourr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘loon.tourr/DESCRIPTION’ ... OK
-...
-* this is package ‘loon.tourr’ version ‘0.1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'loon.ggplot'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/loon.tourr/old/loon.tourr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘loon.tourr/DESCRIPTION’ ... OK
-...
-* this is package ‘loon.tourr’ version ‘0.1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'loon', 'loon.ggplot'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# LorenzRegression
-
-
-
-* Version: 1.0.0
-* GitHub: NA
-* Source code: https://github.com/cran/LorenzRegression
-* Date/Publication: 2023-02-28 17:32:34 UTC
-* Number of recursive dependencies: 63
-
-Run `revdepcheck::cloud_details(, "LorenzRegression")` for more info
-
-
-
-## In both
-
-* checking whether package ‘LorenzRegression’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘LorenzRegression’ ...
-** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘LorenzRegression’
-* removing ‘/tmp/workdir/LorenzRegression/new/LorenzRegression.Rcheck/LorenzRegression’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘LorenzRegression’ ...
-** package ‘LorenzRegression’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_fitness.cpp -o GA_fitness.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c GA_meanrank.cpp -o GA_meanrank.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_derivative.cpp -o PLR_derivative.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c PLR_loss.cpp -o PLR_loss.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘LorenzRegression’
-* removing ‘/tmp/workdir/LorenzRegression/old/LorenzRegression.Rcheck/LorenzRegression’
-
-
-```
-# lsirm12pl
-
-
-
-* Version: 1.3.3
-* GitHub: NA
-* Source code: https://github.com/cran/lsirm12pl
-* Date/Publication: 2024-08-28 23:00:02 UTC
-* Number of recursive dependencies: 124
-
-Run `revdepcheck::cloud_details(, "lsirm12pl")` for more info
-
-
-
-## In both
-
-* checking whether package ‘lsirm12pl’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/new/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘lsirm12pl’ ...
-** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm1pl.cpp -o lsirm1pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsirm2pl.cpp -o lsirm2pl.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c lsm.cpp -o lsm.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c utility_cpp.cpp -o utility_cpp.o
-...
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘lsirm12pl’
-* removing ‘/tmp/workdir/lsirm12pl/old/lsirm12pl.Rcheck/lsirm12pl’
-
-
-```
-# MAAPER
-
-
-
-* Version: 1.1.1
-* GitHub: https://github.com/Vivianstats/MAAPER
-* Source code: https://github.com/cran/MAAPER
-* Date/Publication: 2021-08-14 14:20:05 UTC
-* Number of recursive dependencies: 84
-
-Run `revdepcheck::cloud_details(, "MAAPER")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MAAPER/new/MAAPER.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MAAPER/DESCRIPTION’ ... OK
-...
-* this is package ‘MAAPER’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘GenomicFeatures’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MAAPER/old/MAAPER.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MAAPER/DESCRIPTION’ ... OK
-...
-* this is package ‘MAAPER’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘GenomicFeatures’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# marlod
-
-
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/marlod
-* Date/Publication: 2024-08-27 22:00:02 UTC
-* Number of recursive dependencies: 107
-
-Run `revdepcheck::cloud_details(, "marlod")` for more info
-
-
-
-## In both
-
-* checking whether package ‘marlod’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/marlod/new/marlod.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘marlod’ ...
-** package ‘marlod’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘marlod’
-* removing ‘/tmp/workdir/marlod/new/marlod.Rcheck/marlod’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘marlod’ ...
-** package ‘marlod’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘marlod’
-* removing ‘/tmp/workdir/marlod/old/marlod.Rcheck/marlod’
-
-
-```
-# MARVEL
-
-
-
-* Version: 1.4.0
-* GitHub: NA
-* Source code: https://github.com/cran/MARVEL
-* Date/Publication: 2022-10-31 10:22:50 UTC
-* Number of recursive dependencies: 231
-
-Run `revdepcheck::cloud_details(, "MARVEL")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MARVEL/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘MARVEL.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MARVEL/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘MARVEL.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# MBmca
-
-
-
-* Version: 1.0.1-3
-* GitHub: https://github.com/PCRuniversum/MBmca
-* Source code: https://github.com/cran/MBmca
-* Date/Publication: 2021-09-03 12:40:08 UTC
-* Number of recursive dependencies: 58
-
-Run `revdepcheck::cloud_details(, "MBmca")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MBmca’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MBmca’ ...
-** package ‘MBmca’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MBmca’
-* removing ‘/tmp/workdir/MBmca/new/MBmca.Rcheck/MBmca’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MBmca’ ...
-** package ‘MBmca’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MBmca’
-* removing ‘/tmp/workdir/MBmca/old/MBmca.Rcheck/MBmca’
-
-
-```
-# mbsts
-
-
-
-* Version: 3.0
-* GitHub: NA
-* Source code: https://github.com/cran/mbsts
-* Date/Publication: 2023-01-07 01:10:02 UTC
-* Number of recursive dependencies: 82
-
-Run `revdepcheck::cloud_details(, "mbsts")` for more info
-
-
-
-## In both
-
-* checking whether package ‘mbsts’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘mbsts’ ...
-** package ‘mbsts’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mbsts’
-* removing ‘/tmp/workdir/mbsts/new/mbsts.Rcheck/mbsts’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘mbsts’ ...
-** package ‘mbsts’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mbsts’
-* removing ‘/tmp/workdir/mbsts/old/mbsts.Rcheck/mbsts’
-
-
-```
-# Mega2R
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/Mega2R
-* Date/Publication: 2023-12-21 22:40:10 UTC
-* Number of recursive dependencies: 105
-
-Run `revdepcheck::cloud_details(, "Mega2R")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/Mega2R/new/Mega2R.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Mega2R/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘mega2rtutorial.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/Mega2R/old/Mega2R.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Mega2R/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘mega2rtutorial.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# metajam
-
-
-
-* Version: 0.3.1
-* GitHub: https://github.com/NCEAS/metajam
-* Source code: https://github.com/cran/metajam
-* Date/Publication: 2024-08-16 17:50:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdepcheck::cloud_details(, "metajam")` for more info
-
-
-
-## In both
-
-* checking whether package ‘metajam’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘metajam’ ...
-** package ‘metajam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘metajam’
-* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’
-
-
-```
-# mHMMbayes
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/emmekeaarts/mHMMbayes
-* Source code: https://github.com/cran/mHMMbayes
-* Date/Publication: 2024-04-01 12:20:02 UTC
-* Number of recursive dependencies: 64
-
-Run `revdepcheck::cloud_details(, "mHMMbayes")` for more info
-
-
-
-## In both
-
-* checking whether package ‘mHMMbayes’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘mHMMbayes’ ...
-** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mHMMbayes’
-* removing ‘/tmp/workdir/mHMMbayes/new/mHMMbayes.Rcheck/mHMMbayes’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘mHMMbayes’ ...
-** package ‘mHMMbayes’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cat_mult_fw_cpp.cpp -o cat_mult_fw_cpp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o mHMMbayes.so RcppExports.o cat_mult_fw_cpp.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/00LOCK-mHMMbayes/00new/mHMMbayes/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mHMMbayes’
-* removing ‘/tmp/workdir/mHMMbayes/old/mHMMbayes.Rcheck/mHMMbayes’
-
-
-```
-# MicroSEC
-
-
-
-* Version: 2.1.6
-* GitHub: https://github.com/MANO-B/MicroSEC
-* Source code: https://github.com/cran/MicroSEC
-* Date/Publication: 2024-08-25 07:50:05 UTC
-* Number of recursive dependencies: 88
-
-Run `revdepcheck::cloud_details(, "MicroSEC")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MicroSEC/new/MicroSEC.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MicroSEC/DESCRIPTION’ ... OK
-...
-there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
---- failed re-building ‘my-vignette.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘my-vignette.Rmd’
-
-Execution halted
-
-* DONE
-Status: 2 ERRORs, 2 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MicroSEC/old/MicroSEC.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MicroSEC/DESCRIPTION’ ... OK
-...
-there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
---- failed re-building ‘my-vignette.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘my-vignette.Rmd’
-
-Execution halted
-
-* DONE
-Status: 2 ERRORs, 2 NOTEs
-
-
-
-
-
-```
-# MiRKAT
-
-
-
-* Version: 1.2.3
-* GitHub: NA
-* Source code: https://github.com/cran/MiRKAT
-* Date/Publication: 2023-02-17 14:50:02 UTC
-* Number of recursive dependencies: 114
-
-Run `revdepcheck::cloud_details(, "MiRKAT")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MiRKAT’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MiRKAT/new/MiRKAT.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MiRKAT’ ...
-** package ‘MiRKAT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MiRKAT’
-* removing ‘/tmp/workdir/MiRKAT/new/MiRKAT.Rcheck/MiRKAT’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MiRKAT’ ...
-** package ‘MiRKAT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MiRKAT’
-* removing ‘/tmp/workdir/MiRKAT/old/MiRKAT.Rcheck/MiRKAT’
-
-
-```
-# MitoHEAR
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/MitoHEAR
-* Date/Publication: 2022-03-01 21:20:02 UTC
-* Number of recursive dependencies: 183
-
-Run `revdepcheck::cloud_details(, "MitoHEAR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MitoHEAR/new/MitoHEAR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MitoHEAR/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Packages suggested but not available for checking:
- 'karyoploteR', 'regioneR'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MitoHEAR/old/MitoHEAR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MitoHEAR/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Packages suggested but not available for checking:
- 'karyoploteR', 'regioneR'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# miWQS
-
-
-
-* Version: 0.4.4
-* GitHub: https://github.com/phargarten2/miWQS
-* Source code: https://github.com/cran/miWQS
-* Date/Publication: 2021-04-02 21:50:02 UTC
-* Number of recursive dependencies: 152
-
-Run `revdepcheck::cloud_details(, "miWQS")` for more info
-
-
-
-## In both
-
-* checking whether package ‘miWQS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘miWQS’ ...
-** package ‘miWQS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘miWQS’
-* removing ‘/tmp/workdir/miWQS/new/miWQS.Rcheck/miWQS’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘miWQS’ ...
-** package ‘miWQS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘miWQS’
-* removing ‘/tmp/workdir/miWQS/old/miWQS.Rcheck/miWQS’
-
-
-```
-# MLML2R
-
-
-
-* Version: 0.3.3
-* GitHub: https://github.com/samarafk/MLML2R
-* Source code: https://github.com/cran/MLML2R
-* Date/Publication: 2019-10-17 19:30:02 UTC
-* Number of recursive dependencies: 146
-
-Run `revdepcheck::cloud_details(, "MLML2R")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MLML2R/new/MLML2R.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MLML2R/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MLML2R/old/MLML2R.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MLML2R/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘vignette.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# mlt.docreg
-
-
-
-* Version: 1.1-8
-* GitHub: NA
-* Source code: https://github.com/cran/mlt.docreg
-* Date/Publication: 2024-04-29 13:40:02 UTC
-* Number of recursive dependencies: 152
-
-Run `revdepcheck::cloud_details(, "mlt.docreg")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/mlt.docreg/new/mlt.docreg.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘mlt.docreg/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'rms'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/mlt.docreg/old/mlt.docreg.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘mlt.docreg/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘mlt’
-
-Packages suggested but not available for checking: 'tram', 'rms'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# MOCHA
-
-
-
-* Version: 1.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/MOCHA
-* Date/Publication: 2024-01-25 12:20:12 UTC
-* Number of recursive dependencies: 249
-
-Run `revdepcheck::cloud_details(, "MOCHA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/MOCHA/new/MOCHA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MOCHA/DESCRIPTION’ ... OK
-...
-
-Packages suggested but not available for checking:
- 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene',
- 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19',
- 'chromVAR', 'rtracklayer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/MOCHA/old/MOCHA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘MOCHA/DESCRIPTION’ ... OK
-...
-
-Packages suggested but not available for checking:
- 'ArchR', 'motifmatchr', 'TxDb.Hsapiens.UCSC.hg38.refGene',
- 'TxDb.Hsapiens.UCSC.hg19.knownGene', 'BSgenome.Hsapiens.UCSC.hg19',
- 'chromVAR', 'rtracklayer'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# modeLLtest
-
-
-
-* Version: 1.0.4
-* GitHub: https://github.com/ShanaScogin/modeLLtest
-* Source code: https://github.com/cran/modeLLtest
-* Date/Publication: 2022-05-05 23:20:17 UTC
-* Number of recursive dependencies: 58
-
-Run `revdepcheck::cloud_details(, "modeLLtest")` for more info
-
-
-
-## In both
-
-* checking whether package ‘modeLLtest’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘modeLLtest’ ...
-** package ‘modeLLtest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++11
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘modeLLtest’
-* removing ‘/tmp/workdir/modeLLtest/new/modeLLtest.Rcheck/modeLLtest’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘modeLLtest’ ...
-** package ‘modeLLtest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++11
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_mr.cpp -o cvll_mr.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_ols.cpp -o cvll_ols.o
-g++ -std=gnu++11 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c cvll_rlm_m.cpp -o cvll_rlm_m.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘modeLLtest’
-* removing ‘/tmp/workdir/modeLLtest/old/modeLLtest.Rcheck/modeLLtest’
-
-
-```
-# MRZero
-
-
-
-* Version: 0.2.0
-* GitHub: NA
-* Source code: https://github.com/cran/MRZero
-* Date/Publication: 2024-04-14 09:30:03 UTC
-* Number of recursive dependencies: 82
-
-Run `revdepcheck::cloud_details(, "MRZero")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MRZero’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MRZero’ ...
-** package ‘MRZero’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MRZero’
-* removing ‘/tmp/workdir/MRZero/new/MRZero.Rcheck/MRZero’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MRZero’ ...
-** package ‘MRZero’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MRZero’
-* removing ‘/tmp/workdir/MRZero/old/MRZero.Rcheck/MRZero’
-
-
-```
-# MultiKink
-
-
-
-* Version: 0.2.0
-* GitHub: NA
-* Source code: https://github.com/cran/MultiKink
-* Date/Publication: 2023-11-05 18:00:06 UTC
-* Number of recursive dependencies: 38
-
-Run `revdepcheck::cloud_details(, "MultiKink")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MultiKink’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MultiKink/new/MultiKink.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MultiKink’ ...
-** package ‘MultiKink’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MultiKink’
-* removing ‘/tmp/workdir/MultiKink/new/MultiKink.Rcheck/MultiKink’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MultiKink’ ...
-** package ‘MultiKink’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MultiKink’
-* removing ‘/tmp/workdir/MultiKink/old/MultiKink.Rcheck/MultiKink’
-
-
-```
-# multilevelTools
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/JWiley/multilevelTools
-* Source code: https://github.com/cran/multilevelTools
-* Date/Publication: 2020-03-04 09:50:02 UTC
-* Number of recursive dependencies: 168
-
-Run `revdepcheck::cloud_details(, "multilevelTools")` for more info
-
-
-
-## In both
-
-* checking whether package ‘multilevelTools’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘multilevelTools’ ...
-** package ‘multilevelTools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘multilevelTools’
-* removing ‘/tmp/workdir/multilevelTools/new/multilevelTools.Rcheck/multilevelTools’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘multilevelTools’ ...
-** package ‘multilevelTools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘multilevelTools’
-* removing ‘/tmp/workdir/multilevelTools/old/multilevelTools.Rcheck/multilevelTools’
-
-
-```
-# multinma
-
-
-
-* Version: 0.7.1
-* GitHub: https://github.com/dmphillippo/multinma
-* Source code: https://github.com/cran/multinma
-* Date/Publication: 2024-06-11 12:20:06 UTC
-* Number of recursive dependencies: 152
-
-Run `revdepcheck::cloud_details(, "multinma")` for more info
-
-
-
-## In both
-
-* checking whether package ‘multinma’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘multinma’ ...
-** package ‘multinma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-
-
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_survival_param.o] Error 1
-ERROR: compilation failed for package ‘multinma’
-* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’
-
-
-```
-# mvDFA
-
-
-
-* Version: 0.0.4
-* GitHub: https://github.com/jpirmer/mvDFA
-* Source code: https://github.com/cran/mvDFA
-* Date/Publication: 2023-06-15 17:40:02 UTC
-* Number of recursive dependencies: 44
-
-Run `revdepcheck::cloud_details(, "mvDFA")` for more info
-
-
-
-## In both
-
-* checking whether package ‘mvDFA’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/mvDFA/new/mvDFA.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘mvDFA’ ...
-** package ‘mvDFA’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mvDFA’
-* removing ‘/tmp/workdir/mvDFA/new/mvDFA.Rcheck/mvDFA’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘mvDFA’ ...
-** package ‘mvDFA’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘mvDFA’
-* removing ‘/tmp/workdir/mvDFA/old/mvDFA.Rcheck/mvDFA’
-
-
-```
-# MXM
-
-
-
-* Version: 1.5.5
-* GitHub: NA
-* Source code: https://github.com/cran/MXM
-* Date/Publication: 2022-08-25 08:52:40 UTC
-* Number of recursive dependencies: 116
-
-Run `revdepcheck::cloud_details(, "MXM")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MXM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/MXM/new/MXM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MXM’ ...
-** package ‘MXM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MXM’
-* removing ‘/tmp/workdir/MXM/new/MXM.Rcheck/MXM’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MXM’ ...
-** package ‘MXM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘MXM’
-* removing ‘/tmp/workdir/MXM/old/MXM.Rcheck/MXM’
-
-
-```
-# nebula
-
-
-
-* Version: 1.5.3
-* GitHub: https://github.com/lhe17/nebula
-* Source code: https://github.com/cran/nebula
-* Date/Publication: 2024-02-15 23:00:02 UTC
-* Number of recursive dependencies: 173
-
-Run `revdepcheck::cloud_details(, "nebula")` for more info
-
-
-
-## In both
-
-* checking whether package ‘nebula’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/nebula/new/nebula.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘nebula’ ...
-** package ‘nebula’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘nebula’
-* removing ‘/tmp/workdir/nebula/new/nebula.Rcheck/nebula’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘nebula’ ...
-** package ‘nebula’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:205,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:28,
- from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘nebula’
-* removing ‘/tmp/workdir/nebula/old/nebula.Rcheck/nebula’
-
-
-```
-# NetworkChange
-
-
-
-* Version: 0.8
-* GitHub: https://github.com/jongheepark/NetworkChange
-* Source code: https://github.com/cran/NetworkChange
-* Date/Publication: 2022-03-04 07:30:02 UTC
-* Number of recursive dependencies: 133
-
-Run `revdepcheck::cloud_details(, "NetworkChange")` for more info
-
-
-
-## In both
-
-* checking whether package ‘NetworkChange’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘NetworkChange’ ...
-** package ‘NetworkChange’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘NetworkChange’
-* removing ‘/tmp/workdir/NetworkChange/new/NetworkChange.Rcheck/NetworkChange’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘NetworkChange’ ...
-** package ‘NetworkChange’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘MCMCpack’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘NetworkChange’
-* removing ‘/tmp/workdir/NetworkChange/old/NetworkChange.Rcheck/NetworkChange’
-
-
-```
-# newIMVC
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/newIMVC
-* Date/Publication: 2024-04-16 14:50:13 UTC
-* Number of recursive dependencies: 61
-
-Run `revdepcheck::cloud_details(, "newIMVC")` for more info
-
-
-
-## In both
-
-* checking whether package ‘newIMVC’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘newIMVC’ ...
-** package ‘newIMVC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘newIMVC’
-* removing ‘/tmp/workdir/newIMVC/new/newIMVC.Rcheck/newIMVC’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘newIMVC’ ...
-** package ‘newIMVC’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘newIMVC’
-* removing ‘/tmp/workdir/newIMVC/old/newIMVC.Rcheck/newIMVC’
-
-
-```
-# nlpred
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/nlpred
-* Date/Publication: 2020-02-23 17:30:05 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "nlpred")` for more info
-
-
-
-## In both
-
-* checking whether package ‘nlpred’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘nlpred’ ...
-** package ‘nlpred’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘nlpred’
-* removing ‘/tmp/workdir/nlpred/new/nlpred.Rcheck/nlpred’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘nlpred’ ...
-** package ‘nlpred’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘nlpred’
-* removing ‘/tmp/workdir/nlpred/old/nlpred.Rcheck/nlpred’
-
-
-```
-# noncomplyR
-
-
-
-* Version: 1.0
-* GitHub: NA
-* Source code: https://github.com/cran/noncomplyR
-* Date/Publication: 2017-08-24 08:30:38 UTC
-* Number of recursive dependencies: 15
-
-Run `revdepcheck::cloud_details(, "noncomplyR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘noncomplyR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/noncomplyR/new/noncomplyR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘noncomplyR’ ...
-** package ‘noncomplyR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘noncomplyR’
-* removing ‘/tmp/workdir/noncomplyR/new/noncomplyR.Rcheck/noncomplyR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘noncomplyR’ ...
-** package ‘noncomplyR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘noncomplyR’
-* removing ‘/tmp/workdir/noncomplyR/old/noncomplyR.Rcheck/noncomplyR’
-
-
-```
-# ohun
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/ropensci/ohun
-* Source code: https://github.com/cran/ohun
-* Date/Publication: 2024-08-19 18:40:02 UTC
-* Number of recursive dependencies: 100
-
-Run `revdepcheck::cloud_details(, "ohun")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ohun/new/ohun.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ohun/DESCRIPTION’ ... OK
-...
-* this is package ‘ohun’ version ‘1.0.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘warbleR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ohun/old/ohun.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ohun/DESCRIPTION’ ... OK
-...
-* this is package ‘ohun’ version ‘1.0.2’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘warbleR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# oncoPredict
-
-
-
-* Version: 1.2
-* GitHub: https://github.com/HuangLabUMN/oncoPredict
-* Source code: https://github.com/cran/oncoPredict
-* Date/Publication: 2024-04-05 07:53:00 UTC
-* Number of recursive dependencies: 208
-
-Run `revdepcheck::cloud_details(, "oncoPredict")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/oncoPredict/new/oncoPredict.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘oncoPredict/DESCRIPTION’ ... OK
-...
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/oncoPredict/old/oncoPredict.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘oncoPredict/DESCRIPTION’ ... OK
-...
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'GenomicFeatures', 'TxDb.Hsapiens.UCSC.hg19.knownGene'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# ontologics
-
-
-
-* Version: 0.7.0
-* GitHub: https://github.com/luckinet/ontologics
-* Source code: https://github.com/cran/ontologics
-* Date/Publication: 2023-05-10 09:20:05 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "ontologics")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ontologics’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ontologics’ ...
-** package ‘ontologics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘ontologics’
-* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’
-
-
-```
-# OVtool
-
-
-
-* Version: 1.0.3
-* GitHub: NA
-* Source code: https://github.com/cran/OVtool
-* Date/Publication: 2021-11-02 08:10:07 UTC
-* Number of recursive dependencies: 157
-
-Run `revdepcheck::cloud_details(, "OVtool")` for more info
-
-
-
-## In both
-
-* checking whether package ‘OVtool’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘OVtool’ ...
-** package ‘OVtool’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘OVtool’
-* removing ‘/tmp/workdir/OVtool/new/OVtool.Rcheck/OVtool’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘OVtool’ ...
-** package ‘OVtool’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘twang’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘OVtool’
-* removing ‘/tmp/workdir/OVtool/old/OVtool.Rcheck/OVtool’
-
-
-```
-# pagoda2
-
-
-
-* Version: 1.0.12
-* GitHub: https://github.com/kharchenkolab/pagoda2
-* Source code: https://github.com/cran/pagoda2
-* Date/Publication: 2024-02-27 00:50:02 UTC
-* Number of recursive dependencies: 162
-
-Run `revdepcheck::cloud_details(, "pagoda2")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pagoda2/new/pagoda2.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pagoda2/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rjson’
-
-Package suggested but not available for checking: ‘scde’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pagoda2/old/pagoda2.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pagoda2/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘rjson’
-
-Package suggested but not available for checking: ‘scde’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# PAMpal
-
-
-
-* Version: 1.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/PAMpal
-* Date/Publication: 2024-07-11 22:50:02 UTC
-* Number of recursive dependencies: 118
-
-Run `revdepcheck::cloud_details(, "PAMpal")` for more info
-
-
-
-## In both
-
-* checking whether package ‘PAMpal’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/PAMpal/new/PAMpal.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘PAMpal’ ...
-** package ‘PAMpal’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘PAMpal’
-* removing ‘/tmp/workdir/PAMpal/new/PAMpal.Rcheck/PAMpal’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘PAMpal’ ...
-** package ‘PAMpal’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rjson’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘PAMpal’
-* removing ‘/tmp/workdir/PAMpal/old/PAMpal.Rcheck/PAMpal’
-
-
-```
-# paths
-
-
-
-* Version: 0.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/paths
-* Date/Publication: 2021-06-18 08:40:02 UTC
-* Number of recursive dependencies: 102
-
-Run `revdepcheck::cloud_details(, "paths")` for more info
-
-
-
-## In both
-
-* checking whether package ‘paths’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/paths/new/paths.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘paths’ ...
-** package ‘paths’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘paths’
-* removing ‘/tmp/workdir/paths/new/paths.Rcheck/paths’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘paths’ ...
-** package ‘paths’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘paths’
-* removing ‘/tmp/workdir/paths/old/paths.Rcheck/paths’
-
-
-```
-# PathwaySpace
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/PathwaySpace
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "PathwaySpace")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# pencal
-
-
-
-* Version: 2.2.2
-* GitHub: NA
-* Source code: https://github.com/cran/pencal
-* Date/Publication: 2024-06-12 11:10:02 UTC
-* Number of recursive dependencies: 172
-
-Run `revdepcheck::cloud_details(, "pencal")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/pencal/new/pencal.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pencal/DESCRIPTION’ ... OK
-...
---- failed re-building ‘vignette.Rnw’
-
-SUMMARY: processing the following file failed:
- ‘vignette.Rnw’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/pencal/old/pencal.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘pencal/DESCRIPTION’ ... OK
-...
---- failed re-building ‘vignette.Rnw’
-
-SUMMARY: processing the following file failed:
- ‘vignette.Rnw’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 WARNING, 1 NOTE
-
-
-
-
-
-```
-# pez
-
-
-
-* Version: 1.2-4
-* GitHub: NA
-* Source code: https://github.com/cran/pez
-* Date/Publication: 2022-08-31 18:00:02 UTC
-* Number of recursive dependencies: 71
-
-Run `revdepcheck::cloud_details(, "pez")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pez’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/pez/new/pez.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pez’ ...
-** package ‘pez’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pez’
-* removing ‘/tmp/workdir/pez/new/pez.Rcheck/pez’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pez’ ...
-** package ‘pez’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pez’
-* removing ‘/tmp/workdir/pez/old/pez.Rcheck/pez’
-
-
-```
-# piecewiseSEM
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/piecewiseSEM
-* Number of recursive dependencies: 108
-
-Run `revdepcheck::cloud_details(, "piecewiseSEM")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# polyRAD
-
-
-
-* Version: 2.0.0
-* GitHub: https://github.com/lvclark/polyRAD
-* Source code: https://github.com/cran/polyRAD
-* Date/Publication: 2022-11-06 21:50:02 UTC
-* Number of recursive dependencies: 135
-
-Run `revdepcheck::cloud_details(, "polyRAD")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/polyRAD/new/polyRAD.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘polyRAD/DESCRIPTION’ ... OK
-...
-
- When sourcing ‘polyRADtutorial.R’:
-Error: Probabilities must be finite and non-negative!
-Execution halted
-
- ‘isolocus_sorting.Rmd’ using ‘UTF-8’... OK
- ‘polyRADtutorial.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 ERROR, 3 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/polyRAD/old/polyRAD.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘polyRAD/DESCRIPTION’ ... OK
-...
-
- When sourcing ‘polyRADtutorial.R’:
-Error: Probabilities must be finite and non-negative!
-Execution halted
-
- ‘isolocus_sorting.Rmd’ using ‘UTF-8’... OK
- ‘polyRADtutorial.Rmd’ using ‘UTF-8’... failed
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 ERROR, 3 NOTEs
-
-
-
-
-
-```
-# pould
-
-
-
-* Version: 1.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/pould
-* Date/Publication: 2020-10-16 13:50:03 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "pould")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pould’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/pould/new/pould.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pould’ ...
-** package ‘pould’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘pould’
-* removing ‘/tmp/workdir/pould/new/pould.Rcheck/pould’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pould’ ...
-** package ‘pould’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘pould’
-* removing ‘/tmp/workdir/pould/old/pould.Rcheck/pould’
-
-
-```
-# pre
-
-
-
-* Version: 1.0.7
-* GitHub: https://github.com/marjoleinF/pre
-* Source code: https://github.com/cran/pre
-* Date/Publication: 2024-01-12 19:30:02 UTC
-* Number of recursive dependencies: 151
-
-Run `revdepcheck::cloud_details(, "pre")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pre’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/pre/new/pre.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pre’ ...
-** package ‘pre’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pre’
-* removing ‘/tmp/workdir/pre/new/pre.Rcheck/pre’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pre’ ...
-** package ‘pre’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pre’
-* removing ‘/tmp/workdir/pre/old/pre.Rcheck/pre’
-
-
-```
-# ProFAST
-
-
-
-* Version: 1.4
-* GitHub: https://github.com/feiyoung/ProFAST
-* Source code: https://github.com/cran/ProFAST
-* Date/Publication: 2024-03-18 08:10:06 UTC
-* Number of recursive dependencies: 245
-
-Run `revdepcheck::cloud_details(, "ProFAST")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ProFAST/new/ProFAST.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ProFAST/DESCRIPTION’ ... OK
-...
-* this is package ‘ProFAST’ version ‘1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'DR.SC', 'PRECAST'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ProFAST/old/ProFAST.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ProFAST/DESCRIPTION’ ... OK
-...
-* this is package ‘ProFAST’ version ‘1.4’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'DR.SC', 'PRECAST'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# PRSPGx
-
-
-
-* Version: 0.3.0
-* GitHub: NA
-* Source code: https://github.com/cran/PRSPGx
-* Date/Publication: 2022-07-20 15:00:02 UTC
-* Number of recursive dependencies: 109
-
-Run `revdepcheck::cloud_details(, "PRSPGx")` for more info
-
-
-
-## In both
-
-* checking whether package ‘PRSPGx’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘PRSPGx’ ...
-** package ‘PRSPGx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘PRSPGx’
-* removing ‘/tmp/workdir/PRSPGx/new/PRSPGx.Rcheck/PRSPGx’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘PRSPGx’ ...
-** package ‘PRSPGx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘PRSPGx’
-* removing ‘/tmp/workdir/PRSPGx/old/PRSPGx.Rcheck/PRSPGx’
-
-
-```
-# psbcSpeedUp
-
-
-
-* Version: 2.0.7
-* GitHub: https://github.com/ocbe-uio/psbcSpeedUp
-* Source code: https://github.com/cran/psbcSpeedUp
-* Date/Publication: 2024-07-01 09:00:02 UTC
-* Number of recursive dependencies: 130
-
-Run `revdepcheck::cloud_details(, "psbcSpeedUp")` for more info
-
-
-
-## In both
-
-* checking whether package ‘psbcSpeedUp’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘psbcSpeedUp’ ...
-** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether the compiler supports GNU C++... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘psbcSpeedUp’
-* removing ‘/tmp/workdir/psbcSpeedUp/new/psbcSpeedUp.Rcheck/psbcSpeedUp’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘psbcSpeedUp’ ...
-** package ‘psbcSpeedUp’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether the compiler supports GNU C++... yes
-checking whether g++ -std=gnu++17 accepts -g... yes
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘rms’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘psbcSpeedUp’
-* removing ‘/tmp/workdir/psbcSpeedUp/old/psbcSpeedUp.Rcheck/psbcSpeedUp’
-
-
-```
-# pscore
-
-
-
-* Version: 0.4.0
-* GitHub: https://github.com/JWiley/score-project
-* Source code: https://github.com/cran/pscore
-* Date/Publication: 2022-05-13 22:30:02 UTC
-* Number of recursive dependencies: 169
-
-Run `revdepcheck::cloud_details(, "pscore")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pscore’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/pscore/new/pscore.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pscore’ ...
-** package ‘pscore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pscore’
-* removing ‘/tmp/workdir/pscore/new/pscore.Rcheck/pscore’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pscore’ ...
-** package ‘pscore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pscore’
-* removing ‘/tmp/workdir/pscore/old/pscore.Rcheck/pscore’
-
-
-```
-# pssmooth
-
-
-
-* Version: 1.0.3
-* GitHub: https://github.com/mjuraska/pssmooth
-* Source code: https://github.com/cran/pssmooth
-* Date/Publication: 2020-11-18 13:20:03 UTC
-* Number of recursive dependencies: 47
-
-Run `revdepcheck::cloud_details(, "pssmooth")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pssmooth’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pssmooth’ ...
-** package ‘pssmooth’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pssmooth’
-* removing ‘/tmp/workdir/pssmooth/new/pssmooth.Rcheck/pssmooth’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pssmooth’ ...
-** package ‘pssmooth’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Warning in check_dep_version() :
- ABI version mismatch:
-lme4 was built with Matrix ABI version 1
-Current Matrix ABI version is 0
-Please re-install lme4 from source or restore original ‘Matrix’ package
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘pssmooth’
-* removing ‘/tmp/workdir/pssmooth/old/pssmooth.Rcheck/pssmooth’
-
-
-```
-# ptmixed
-
-
-
-* Version: 1.1.3
-* GitHub: NA
-* Source code: https://github.com/cran/ptmixed
-* Date/Publication: 2022-08-18 12:00:02 UTC
-* Number of recursive dependencies: 55
-
-Run `revdepcheck::cloud_details(, "ptmixed")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/ptmixed/new/ptmixed.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ptmixed/DESCRIPTION’ ... OK
-...
-* this is package ‘ptmixed’ version ‘1.1.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘tweeDEseq’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/ptmixed/old/ptmixed.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘ptmixed/DESCRIPTION’ ... OK
-...
-* this is package ‘ptmixed’ version ‘1.1.3’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘tweeDEseq’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# qte
-
-
-
-* Version: 1.3.1
-* GitHub: NA
-* Source code: https://github.com/cran/qte
-* Date/Publication: 2022-09-01 14:30:02 UTC
-* Number of recursive dependencies: 87
-
-Run `revdepcheck::cloud_details(, "qte")` for more info
-
-
-
-## In both
-
-* checking whether package ‘qte’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/qte/new/qte.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘qte’ ...
-** package ‘qte’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘qte’
-* removing ‘/tmp/workdir/qte/new/qte.Rcheck/qte’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘qte’ ...
-** package ‘qte’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘qte’
-* removing ‘/tmp/workdir/qte/old/qte.Rcheck/qte’
-
-
-```
-# Qtools
-
-
-
-* Version: 1.5.9
-* GitHub: NA
-* Source code: https://github.com/cran/Qtools
-* Date/Publication: 2023-10-28 15:10:02 UTC
-* Number of recursive dependencies: 103
-
-Run `revdepcheck::cloud_details(, "Qtools")` for more info
-
-
-
-## In both
-
-* checking whether package ‘Qtools’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/Qtools/new/Qtools.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘Qtools’ ...
-** package ‘Qtools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c Qtools.cpp -o Qtools.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o Qtools.so Qtools.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/Qtools/new/Qtools.Rcheck/00LOCK-Qtools/00new/Qtools/libs
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘Qtools’
-* removing ‘/tmp/workdir/Qtools/new/Qtools.Rcheck/Qtools’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘Qtools’ ...
-** package ‘Qtools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c Qtools.cpp -o Qtools.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o Qtools.so Qtools.o RcppExports.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/Qtools/old/Qtools.Rcheck/00LOCK-Qtools/00new/Qtools/libs
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘Qtools’
-* removing ‘/tmp/workdir/Qtools/old/Qtools.Rcheck/Qtools’
-
-
-```
-# QuantileGH
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/QuantileGH
-* Number of recursive dependencies: 98
-
-Run `revdepcheck::cloud_details(, "QuantileGH")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# quantilogram
-
-
-
-* Version: 3.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/quantilogram
-* Date/Publication: 2024-08-27 12:40:02 UTC
-* Number of recursive dependencies: 58
-
-Run `revdepcheck::cloud_details(, "quantilogram")` for more info
-
-
-
-## In both
-
-* checking whether package ‘quantilogram’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quantilogram’ ...
-** package ‘quantilogram’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quantilogram’
-* removing ‘/tmp/workdir/quantilogram/new/quantilogram.Rcheck/quantilogram’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quantilogram’ ...
-** package ‘quantilogram’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quantilogram’
-* removing ‘/tmp/workdir/quantilogram/old/quantilogram.Rcheck/quantilogram’
-
-
-```
-# quantregGrowth
-
-
-
-* Version: 1.7-1
-* GitHub: NA
-* Source code: https://github.com/cran/quantregGrowth
-* Date/Publication: 2024-05-20 09:10:02 UTC
-* Number of recursive dependencies: 37
-
-Run `revdepcheck::cloud_details(, "quantregGrowth")` for more info
-
-
-
-## In both
-
-* checking whether package ‘quantregGrowth’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quantregGrowth’ ...
-** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘quantregGrowth’
-* removing ‘/tmp/workdir/quantregGrowth/new/quantregGrowth.Rcheck/quantregGrowth’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quantregGrowth’ ...
-** package ‘quantregGrowth’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘quantreg’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘quantregGrowth’
-* removing ‘/tmp/workdir/quantregGrowth/old/quantregGrowth.Rcheck/quantregGrowth’
-
-
-```
-# quid
-
-
-
-* Version: 0.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/quid
-* Date/Publication: 2021-12-09 09:00:02 UTC
-* Number of recursive dependencies: 95
-
-Run `revdepcheck::cloud_details(, "quid")` for more info
-
-
-
-## In both
-
-* checking whether package ‘quid’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/quid/new/quid.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quid’ ...
-** package ‘quid’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quid’
-* removing ‘/tmp/workdir/quid/new/quid.Rcheck/quid’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quid’ ...
-** package ‘quid’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘quid’
-* removing ‘/tmp/workdir/quid/old/quid.Rcheck/quid’
-
-
-```
-# RATest
-
-
-
-* Version: 0.1.10
-* GitHub: https://github.com/ignaciomsarmiento/RATest
-* Source code: https://github.com/cran/RATest
-* Date/Publication: 2022-09-29 04:30:02 UTC
-* Number of recursive dependencies: 54
-
-Run `revdepcheck::cloud_details(, "RATest")` for more info
-
-
-
-## In both
-
-* checking whether package ‘RATest’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/RATest/new/RATest.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘RATest’ ...
-** package ‘RATest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RATest’
-* removing ‘/tmp/workdir/RATest/new/RATest.Rcheck/RATest’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘RATest’ ...
-** package ‘RATest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RATest’
-* removing ‘/tmp/workdir/RATest/old/RATest.Rcheck/RATest’
-
-
-```
-# rddtools
-
-
-
-* Version: 1.6.0
-* GitHub: https://github.com/bquast/rddtools
-* Source code: https://github.com/cran/rddtools
-* Date/Publication: 2022-01-10 12:42:49 UTC
-* Number of recursive dependencies: 106
-
-Run `revdepcheck::cloud_details(, "rddtools")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rddtools’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rddtools’ ...
-** package ‘rddtools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘rddtools’
-* removing ‘/tmp/workdir/rddtools/new/rddtools.Rcheck/rddtools’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rddtools’ ...
-** package ‘rddtools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘np’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Execution halted
-ERROR: lazy loading failed for package ‘rddtools’
-* removing ‘/tmp/workdir/rddtools/old/rddtools.Rcheck/rddtools’
-
-
-```
-# rdflib
-
-
-
-* Version: 0.2.9
-* GitHub: https://github.com/ropensci/rdflib
-* Source code: https://github.com/cran/rdflib
-* Date/Publication: 2024-08-17 06:00:05 UTC
-* Number of recursive dependencies: 94
-
-Run `revdepcheck::cloud_details(, "rdflib")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rdflib’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rdflib’ ...
-** package ‘rdflib’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.3.1/lib/R/site-library/redland/libs/redland.so':
- librdf.so.0: cannot open shared object file: No such file or directory
-Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘rdflib’
-* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
-
-
-```
-# redland
-
-
-
-* Version: 1.0.17-18
-* GitHub: https://github.com/ropensci/redland-bindings
-* Source code: https://github.com/cran/redland
-* Date/Publication: 2024-02-24 01:10:02 UTC
-* Number of recursive dependencies: 59
-
-Run `revdepcheck::cloud_details(, "redland")` for more info
-
-
-
-## In both
-
-* checking whether package ‘redland’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/redland/new/redland.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘redland’ ...
-** package ‘redland’ successfully unpacked and MD5 sums checked
-** using staged installation
-Using PKG_CFLAGS=
-Using PKG_LIBS=-lrdf
-------------------------- ANTICONF ERROR ---------------------------
-Configuration failed because redland was not found. Try installing:
- * deb: librdf0-dev (Debian, Ubuntu, etc)
- * rpm: redland-devel (Fedora, EPEL)
- * brew: redland (OSX)
-If redland is already installed, check that 'pkg-config' is in your
-PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config
-is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
-R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
---------------------------------------------------------------------
-ERROR: configuration failed for package ‘redland’
-* removing ‘/tmp/workdir/redland/new/redland.Rcheck/redland’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘redland’ ...
-** package ‘redland’ successfully unpacked and MD5 sums checked
-** using staged installation
-Using PKG_CFLAGS=
-Using PKG_LIBS=-lrdf
-------------------------- ANTICONF ERROR ---------------------------
-Configuration failed because redland was not found. Try installing:
- * deb: librdf0-dev (Debian, Ubuntu, etc)
- * rpm: redland-devel (Fedora, EPEL)
- * brew: redland (OSX)
-If redland is already installed, check that 'pkg-config' is in your
-PATH and PKG_CONFIG_PATH contains a redland.pc file. If pkg-config
-is unavailable you can set INCLUDE_DIR and LIB_DIR manually via:
-R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'
---------------------------------------------------------------------
-ERROR: configuration failed for package ‘redland’
-* removing ‘/tmp/workdir/redland/old/redland.Rcheck/redland’
-
-
-```
-# revert
-
-
-
-* Version: 0.0.1
-* GitHub: NA
-* Source code: https://github.com/cran/revert
-* Date/Publication: 2023-11-23 16:20:05 UTC
-* Number of recursive dependencies: 73
-
-Run `revdepcheck::cloud_details(, "revert")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/revert/new/revert.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘revert/DESCRIPTION’ ... OK
-...
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg38'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/revert/old/revert.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘revert/DESCRIPTION’ ... OK
-...
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available:
- 'BSgenome', 'BSgenome.Hsapiens.UCSC.hg38'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# RFLPtools
-
-
-
-* Version: 2.0
-* GitHub: NA
-* Source code: https://github.com/cran/RFLPtools
-* Date/Publication: 2022-02-08 09:40:02 UTC
-* Number of recursive dependencies: 52
-
-Run `revdepcheck::cloud_details(, "RFLPtools")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/RFLPtools/new/RFLPtools.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RFLPtools/DESCRIPTION’ ... OK
-...
---- failed re-building ‘RFLPtools.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘RFLPtools.Rmd’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 ERROR, 1 WARNING, 2 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/RFLPtools/old/RFLPtools.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RFLPtools/DESCRIPTION’ ... OK
-...
---- failed re-building ‘RFLPtools.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘RFLPtools.Rmd’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 ERROR, 1 WARNING, 2 NOTEs
-
-
-
-
-
-```
-# Rgff
-
-
-
-* Version: 0.1.6
-* GitHub: NA
-* Source code: https://github.com/cran/Rgff
-* Date/Publication: 2022-09-30 10:40:02 UTC
-* Number of recursive dependencies: 113
-
-Run `revdepcheck::cloud_details(, "Rgff")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/Rgff/new/Rgff.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Rgff/DESCRIPTION’ ... OK
-...
---- failed re-building ‘Using_Rgff.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘Using_Rgff.Rmd’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 ERROR, 3 NOTEs
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/Rgff/old/Rgff.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Rgff/DESCRIPTION’ ... OK
-...
---- failed re-building ‘Using_Rgff.Rmd’
-
-SUMMARY: processing the following file failed:
- ‘Using_Rgff.Rmd’
-
-Error: Vignette re-building failed.
-Execution halted
-
-* DONE
-Status: 1 ERROR, 3 NOTEs
-
-
-
-
-
-```
-# RGraphSpace
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/RGraphSpace
-* Number of recursive dependencies: 65
-
-Run `revdepcheck::cloud_details(, "RGraphSpace")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# rms
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/rms
-* Number of recursive dependencies: 145
-
-Run `revdepcheck::cloud_details(, "rms")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# RNAseqQC
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/frederikziebell/RNAseqQC
-* Source code: https://github.com/cran/RNAseqQC
-* Date/Publication: 2024-07-15 14:40:02 UTC
-* Number of recursive dependencies: 162
-
-Run `revdepcheck::cloud_details(, "RNAseqQC")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/RNAseqQC/new/RNAseqQC.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ensembldb', 'ComplexHeatmap'
-
-Package suggested but not available for checking: ‘recount3’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/RNAseqQC/old/RNAseqQC.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RNAseqQC/DESCRIPTION’ ... OK
-...
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ensembldb', 'ComplexHeatmap'
-
-Package suggested but not available for checking: ‘recount3’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# robmed
-
-
-
-* Version: 1.0.2
-* GitHub: https://github.com/aalfons/robmed
-* Source code: https://github.com/cran/robmed
-* Date/Publication: 2023-06-16 23:00:02 UTC
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "robmed")` for more info
-
-
-
-## In both
-
-* checking whether package ‘robmed’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/robmed/new/robmed.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘robmed’ ...
-** package ‘robmed’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘robmed’
-* removing ‘/tmp/workdir/robmed/new/robmed.Rcheck/robmed’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘robmed’ ...
-** package ‘robmed’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘robmed’
-* removing ‘/tmp/workdir/robmed/old/robmed.Rcheck/robmed’
-
-
-```
-# RPPASPACE
-
-
-
-* Version: 1.0.10
-* GitHub: https://github.com/MD-Anderson-Bioinformatics/rppaspace
-* Source code: https://github.com/cran/RPPASPACE
-* Date/Publication: 2023-10-19 21:30:08 UTC
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "RPPASPACE")` for more info
-
-
-
-## In both
-
-* checking whether package ‘RPPASPACE’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/RPPASPACE/new/RPPASPACE.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘RPPASPACE’ ...
-** package ‘RPPASPACE’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RPPASPACE’
-* removing ‘/tmp/workdir/RPPASPACE/new/RPPASPACE.Rcheck/RPPASPACE’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘RPPASPACE’ ...
-** package ‘RPPASPACE’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RPPASPACE’
-* removing ‘/tmp/workdir/RPPASPACE/old/RPPASPACE.Rcheck/RPPASPACE’
-
-
-```
-# RQdeltaCT
-
-
-
-* Version: 1.3.0
-* GitHub: NA
-* Source code: https://github.com/cran/RQdeltaCT
-* Date/Publication: 2024-04-17 15:50:02 UTC
-* Number of recursive dependencies: 166
-
-Run `revdepcheck::cloud_details(, "RQdeltaCT")` for more info
-
-
-
-## In both
-
-* checking whether package ‘RQdeltaCT’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘RQdeltaCT’ ...
-** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RQdeltaCT’
-* removing ‘/tmp/workdir/RQdeltaCT/new/RQdeltaCT.Rcheck/RQdeltaCT’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘RQdeltaCT’ ...
-** package ‘RQdeltaCT’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘RQdeltaCT’
-* removing ‘/tmp/workdir/RQdeltaCT/old/RQdeltaCT.Rcheck/RQdeltaCT’
-
-
-```
-# rqPen
-
-
-
-* Version: 4.1.1
-* GitHub: https://github.com/bssherwood/rqpen
-* Source code: https://github.com/cran/rqPen
-* Date/Publication: 2024-06-04 13:30:01 UTC
-* Number of recursive dependencies: 24
-
-Run `revdepcheck::cloud_details(, "rqPen")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rqPen’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rqPen’ ...
-** package ‘rqPen’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/rqPen/new/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘rqPen’
-* removing ‘/tmp/workdir/rqPen/new/rqPen.Rcheck/rqPen’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rqPen’ ...
-** package ‘rqPen’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -c solvebetaRcpp.cpp -o solvebetaRcpp.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o rqPen.so RcppExports.o solvebetaRcpp.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/rqPen/old/rqPen.Rcheck/00LOCK-rqPen/00new/rqPen/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘rqPen’
-* removing ‘/tmp/workdir/rqPen/old/rqPen.Rcheck/rqPen’
-
-
-```
-# Rraven
-
-
-
-* Version: 1.0.14
-* GitHub: https://github.com/maRce10/Rraven
-* Source code: https://github.com/cran/Rraven
-* Date/Publication: 2024-08-19 22:40:10 UTC
-* Number of recursive dependencies: 90
-
-Run `revdepcheck::cloud_details(, "Rraven")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/Rraven/new/Rraven.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Rraven/DESCRIPTION’ ... OK
-...
-* checking extension type ... Package
-* this is package ‘Rraven’ version ‘1.0.14’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘warbleR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/Rraven/old/Rraven.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘Rraven/DESCRIPTION’ ... OK
-...
-* checking extension type ... Package
-* this is package ‘Rraven’ version ‘1.0.14’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘warbleR’
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# RRPP
-
-
-
-* Version: NA
-* GitHub: NA
-* Source code: https://github.com/cran/RRPP
-* Number of recursive dependencies: 68
-
-Run `revdepcheck::cloud_details(, "RRPP")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
-
-
-
-
-
-```
-### CRAN
-
-```
-
-
-
-
-
-
-```
-# rsolr
-
-
-
-* Version: 0.0.13
-* GitHub: NA
-* Source code: https://github.com/cran/rsolr
-* Date/Publication: 2022-05-18 07:10:02 UTC
-* Number of recursive dependencies: 27
-
-Run `revdepcheck::cloud_details(, "rsolr")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/rsolr/new/rsolr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘rsolr/DESCRIPTION’ ... OK
-...
-* checking extension type ... Package
-* this is package ‘rsolr’ version ‘0.0.13’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'restfulr', 'rjson'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/rsolr/old/rsolr.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘rsolr/DESCRIPTION’ ... OK
-...
-* checking extension type ... Package
-* this is package ‘rsolr’ version ‘0.0.13’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'restfulr', 'rjson'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# rstanarm
-
-
-
-* Version: 2.32.1
-* GitHub: https://github.com/stan-dev/rstanarm
-* Source code: https://github.com/cran/rstanarm
-* Date/Publication: 2024-01-18 23:00:03 UTC
-* Number of recursive dependencies: 138
-
-Run `revdepcheck::cloud_details(, "rstanarm")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rstanarm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rstanarm’ ...
-** package ‘rstanarm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
-Wrote C++ file "stan_files/bernoulli.cc"
-
-
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:16: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1
-rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc
-ERROR: compilation failed for package ‘rstanarm’
-* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rstanarm’ ...
-** package ‘rstanarm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-using C++17
-"/opt/R/4.3.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
-Wrote C++ file "stan_files/bernoulli.cc"
-
-
-...
-/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:16: required from here
-/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes]
- 654 | return internal::first_aligned::alignment),Derived>(m);
- | ^~~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stan_files/continuous.o] Error 1
-rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc
-ERROR: compilation failed for package ‘rstanarm’
-* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’
-
-
-```
-# RTIGER
-
-
-
-* Version: 2.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/RTIGER
-* Date/Publication: 2023-03-29 09:20:02 UTC
-* Number of recursive dependencies: 160
-
-Run `revdepcheck::cloud_details(, "RTIGER")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/RTIGER/new/RTIGER.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RTIGER/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘tutorial_RTIGER.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/RTIGER/old/RTIGER.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RTIGER/DESCRIPTION’ ... OK
-...
-* checking installed files from ‘inst/doc’ ... OK
-* checking files in ‘vignettes’ ... OK
-* checking examples ... OK
-* checking for unstated dependencies in vignettes ... OK
-* checking package vignettes in ‘inst/doc’ ... OK
-* checking running R code from vignettes ... OK
- ‘tutorial_RTIGER.Rmd’ using ‘UTF-8’... OK
-* checking re-building of vignette outputs ... OK
-* DONE
-Status: 1 NOTE
-
-
-
-
-
-```
-# rTwig
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/aidanmorales/rTwig
-* Source code: https://github.com/cran/rTwig
-* Date/Publication: 2024-08-21 00:50:02 UTC
-* Number of recursive dependencies: 147
-
-Run `revdepcheck::cloud_details(, "rTwig")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rTwig’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rTwig’ ...
-** package ‘rTwig’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c box_counting.cpp -o box_counting.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c colors.cpp -o colors.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cylinder_mesh.cpp -o cylinder_mesh.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘rTwig’
-* removing ‘/tmp/workdir/rTwig/new/rTwig.Rcheck/rTwig’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rTwig’ ...
-** package ‘rTwig’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c box_counting.cpp -o box_counting.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c colors.cpp -o colors.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c convex_hull.cpp -o convex_hull.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c cylinder_mesh.cpp -o cylinder_mesh.o
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘rTwig’
-* removing ‘/tmp/workdir/rTwig/old/rTwig.Rcheck/rTwig’
-
-
-```
-# RVA
-
-
-
-* Version: 0.0.5
-* GitHub: https://github.com/THERMOSTATS/RVA
-* Source code: https://github.com/cran/RVA
-* Date/Publication: 2021-11-01 21:40:02 UTC
-* Number of recursive dependencies: 207
-
-Run `revdepcheck::cloud_details(, "RVA")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ComplexHeatmap', 'rWikiPathways'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘RVA/DESCRIPTION’ ... OK
-...
-* this is package ‘RVA’ version ‘0.0.5’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'ComplexHeatmap', 'rWikiPathways'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# scAnnotate
-
-
-
-* Version: 0.3
-* GitHub: NA
-* Source code: https://github.com/cran/scAnnotate
-* Date/Publication: 2024-03-14 00:00:02 UTC
-* Number of recursive dependencies: 164
-
-Run `revdepcheck::cloud_details(, "scAnnotate")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scAnnotate’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scAnnotate’ ...
-** package ‘scAnnotate’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scAnnotate’
-* removing ‘/tmp/workdir/scAnnotate/new/scAnnotate.Rcheck/scAnnotate’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scAnnotate’ ...
-** package ‘scAnnotate’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scAnnotate’
-* removing ‘/tmp/workdir/scAnnotate/old/scAnnotate.Rcheck/scAnnotate’
-
-
-```
-# scaper
-
-
-
-* Version: 0.1.0
-* GitHub: NA
-* Source code: https://github.com/cran/scaper
-* Date/Publication: 2023-10-19 07:20:02 UTC
-* Number of recursive dependencies: 161
-
-Run `revdepcheck::cloud_details(, "scaper")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scaper’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/scaper/new/scaper.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scaper’ ...
-** package ‘scaper’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scaper’
-* removing ‘/tmp/workdir/scaper/new/scaper.Rcheck/scaper’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scaper’ ...
-** package ‘scaper’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scaper’
-* removing ‘/tmp/workdir/scaper/old/scaper.Rcheck/scaper’
-
-
-```
-# scCustomize
-
-
-
-* Version: 2.1.2
-* GitHub: https://github.com/samuel-marsh/scCustomize
-* Source code: https://github.com/cran/scCustomize
-* Date/Publication: 2024-02-28 19:40:02 UTC
-* Number of recursive dependencies: 267
-
-Run `revdepcheck::cloud_details(, "scCustomize")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘scCustomize/DESCRIPTION’ ... OK
-...
-* checking if there is a namespace ... OK
-* checking for executable files ... OK
-* checking for hidden files and directories ... OK
-* checking for portable file names ... OK
-* checking for sufficient/correct file permissions ... OK
-* checking whether package ‘scCustomize’ can be installed ... ERROR
-Installation failed.
-See ‘/tmp/workdir/scCustomize/new/scCustomize.Rcheck/00install.out’ for details.
-* DONE
-Status: 1 ERROR, 1 NOTE
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘scCustomize/DESCRIPTION’ ... OK
-...
-* checking if there is a namespace ... OK
-* checking for executable files ... OK
-* checking for hidden files and directories ... OK
-* checking for portable file names ... OK
-* checking for sufficient/correct file permissions ... OK
-* checking whether package ‘scCustomize’ can be installed ... ERROR
-Installation failed.
-See ‘/tmp/workdir/scCustomize/old/scCustomize.Rcheck/00install.out’ for details.
-* DONE
-Status: 1 ERROR, 1 NOTE
-
-
-
-
-
-```
-# SCdeconR
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/Liuy12/SCdeconR
-* Source code: https://github.com/cran/SCdeconR
-* Date/Publication: 2024-03-22 19:20:02 UTC
-* Number of recursive dependencies: 236
-
-Run `revdepcheck::cloud_details(, "SCdeconR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SCdeconR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCdeconR’ ...
-** package ‘SCdeconR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘SCdeconR’
-* removing ‘/tmp/workdir/SCdeconR/new/SCdeconR.Rcheck/SCdeconR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCdeconR’ ...
-** package ‘SCdeconR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Execution halted
-ERROR: lazy loading failed for package ‘SCdeconR’
-* removing ‘/tmp/workdir/SCdeconR/old/SCdeconR.Rcheck/SCdeconR’
-
-
-```
-# scGate
-
-
-
-* Version: 1.6.2
-* GitHub: https://github.com/carmonalab/scGate
-* Source code: https://github.com/cran/scGate
-* Date/Publication: 2024-04-23 08:50:02 UTC
-* Number of recursive dependencies: 179
-
-Run `revdepcheck::cloud_details(, "scGate")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scGate’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/scGate/new/scGate.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scGate’ ...
-** package ‘scGate’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘query.seurat’
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘query.seurat’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scGate’
-* removing ‘/tmp/workdir/scGate/new/scGate.Rcheck/scGate’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scGate’ ...
-** package ‘scGate’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘query.seurat’
-Warning: namespace ‘Seurat’ is not available and has been replaced
-by .GlobalEnv when processing object ‘query.seurat’
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scGate’
-* removing ‘/tmp/workdir/scGate/old/scGate.Rcheck/scGate’
-
-
-```
-# scGOclust
-
-
-
-* Version: 0.2.1
-* GitHub: https://github.com/Papatheodorou-Group/scGOclust
-* Source code: https://github.com/cran/scGOclust
-* Date/Publication: 2024-01-24 14:40:02 UTC
-* Number of recursive dependencies: 217
-
-Run `revdepcheck::cloud_details(, "scGOclust")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scGOclust’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/scGOclust/new/scGOclust.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scGOclust’ ...
-** package ‘scGOclust’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scGOclust’
-* removing ‘/tmp/workdir/scGOclust/new/scGOclust.Rcheck/scGOclust’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scGOclust’ ...
-** package ‘scGOclust’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scGOclust’
-* removing ‘/tmp/workdir/scGOclust/old/scGOclust.Rcheck/scGOclust’
-
-
-```
-# SCIntRuler
-
-
-
-* Version: 0.99.6
-* GitHub: https://github.com/yuelyu21/SCIntRuler
-* Source code: https://github.com/cran/SCIntRuler
-* Date/Publication: 2024-07-12 15:20:08 UTC
-* Number of recursive dependencies: 202
-
-Run `revdepcheck::cloud_details(, "SCIntRuler")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SCIntRuler’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCIntRuler’ ...
-** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SCIntRuler’
-* removing ‘/tmp/workdir/SCIntRuler/new/SCIntRuler.Rcheck/SCIntRuler’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCIntRuler’ ...
-** package ‘SCIntRuler’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c crossdist.cpp -o crossdist.o
-g++ -std=gnu++17 -shared -L/opt/R/4.3.1/lib/R/lib -L/usr/local/lib -o SCIntRuler.so RcppExports.o crossdist.o -L/opt/R/4.3.1/lib/R/lib -lR
-installing to /tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/00LOCK-SCIntRuler/00new/SCIntRuler/libs
-** R
-...
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is being loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SCIntRuler’
-* removing ‘/tmp/workdir/SCIntRuler/old/SCIntRuler.Rcheck/SCIntRuler’
-
-
-```
-# scITD
-
-
-
-* Version: 1.0.4
-* GitHub: NA
-* Source code: https://github.com/cran/scITD
-* Date/Publication: 2023-09-08 16:00:02 UTC
-* Number of recursive dependencies: 233
-
-Run `revdepcheck::cloud_details(, "scITD")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/scITD/new/scITD.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘scITD/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Packages suggested but not available for checking:
- 'simplifyEnrichment', 'conos', 'pagoda2'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/scITD/old/scITD.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘scITD/DESCRIPTION’ ... OK
-...
-* checking package dependencies ... ERROR
-Package required but not available: ‘ComplexHeatmap’
-
-Packages suggested but not available for checking:
- 'simplifyEnrichment', 'conos', 'pagoda2'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# scMappR
-
-
-
-* Version: 1.0.11
-* GitHub: NA
-* Source code: https://github.com/cran/scMappR
-* Date/Publication: 2023-06-30 08:40:08 UTC
-* Number of recursive dependencies: 241
-
-Run `revdepcheck::cloud_details(, "scMappR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scMappR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scMappR’ ...
-** package ‘scMappR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scMappR’
-* removing ‘/tmp/workdir/scMappR/new/scMappR.Rcheck/scMappR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scMappR’ ...
-** package ‘scMappR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘scMappR’
-* removing ‘/tmp/workdir/scMappR/old/scMappR.Rcheck/scMappR’
-
-
-```
-# SCRIP
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/thecailab/SCRIP
-* Source code: https://github.com/cran/SCRIP
-* Date/Publication: 2021-11-19 07:50:02 UTC
-* Number of recursive dependencies: 192
-
-Run `revdepcheck::cloud_details(, "SCRIP")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SCRIP’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCRIP’ ...
-** package ‘SCRIP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SCRIP’
-* removing ‘/tmp/workdir/SCRIP/new/SCRIP.Rcheck/SCRIP’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCRIP’ ...
-** package ‘SCRIP’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SCRIP’
-* removing ‘/tmp/workdir/SCRIP/old/SCRIP.Rcheck/SCRIP’
-
-
-```
-# SeBR
-
-
-
-* Version: 1.0.0
-* GitHub: https://github.com/drkowal/SeBR
-* Source code: https://github.com/cran/SeBR
-* Date/Publication: 2023-07-03 16:30:10 UTC
-* Number of recursive dependencies: 77
-
-Run `revdepcheck::cloud_details(, "SeBR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SeBR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/SeBR/new/SeBR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SeBR’ ...
-** package ‘SeBR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SeBR’
-* removing ‘/tmp/workdir/SeBR/new/SeBR.Rcheck/SeBR’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SeBR’ ...
-** package ‘SeBR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘SeBR’
-* removing ‘/tmp/workdir/SeBR/old/SeBR.Rcheck/SeBR’
-
-
-```
-# SeedMatchR
-
-
-
-* Version: 1.1.1
-* GitHub: NA
-* Source code: https://github.com/cran/SeedMatchR
-* Date/Publication: 2023-10-24 20:30:02 UTC
-* Number of recursive dependencies: 167
-
-Run `revdepcheck::cloud_details(, "SeedMatchR")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-* using log directory ‘/tmp/workdir/SeedMatchR/new/SeedMatchR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SeedMatchR/DESCRIPTION’ ... OK
-...
-* this is package ‘SeedMatchR’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'msa', 'GenomicFeatures'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-### CRAN
-
-```
-* using log directory ‘/tmp/workdir/SeedMatchR/old/SeedMatchR.Rcheck’
-* using R version 4.3.1 (2023-06-16)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* R was compiled by
- gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
- GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
-* running under: Ubuntu 22.04.4 LTS
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘SeedMatchR/DESCRIPTION’ ... OK
-...
-* this is package ‘SeedMatchR’ version ‘1.1.1’
-* package encoding: UTF-8
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'msa', 'GenomicFeatures'
-
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
-
-
-
-
-
-```
-# semicmprskcoxmsm
-
-
-
-* Version: 0.2.0
-* GitHub: NA
-* Source code: https://github.com/cran/semicmprskcoxmsm
-* Date/Publication: 2022-04-29 23:40:02 UTC
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "semicmprskcoxmsm")` for more info
-
-
-
-## In both
-
-* checking whether package ‘semicmprskcoxmsm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘semicmprskcoxmsm’ ...
-** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
-Execution halted
-ERROR: lazy loading failed for package ‘semicmprskcoxmsm’
-* removing ‘/tmp/workdir/semicmprskcoxmsm/new/semicmprskcoxmsm.Rcheck/semicmprskcoxmsm’
-
-
-```
-### CRAN
-
-```
-* installing *source* package ‘semicmprskcoxmsm’ ...
-** package ‘semicmprskcoxmsm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.0 is required
-Calls: