diff --git a/DESCRIPTION b/DESCRIPTION
index 0956750..6a7d5da 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -4,11 +4,11 @@ Version: 0.3.1.9000
Authors@R:
c(person(given = "Hadley",
family = "Wickham",
- role = c("aut", "cre"),
+ role = "aut",
email = "hadley@posit.co"),
person(given = "Thomas Lin",
family = "Pedersen",
- role = "aut",
+ role = c("aut", "cre"),
email = "thomas.pedersen@posit.co"),
person(given = "Posit Software, PBC",
role = "cph"))
diff --git a/NEWS.md b/NEWS.md
index 242b984..3a07a38 100644
--- a/NEWS.md
+++ b/NEWS.md
@@ -1,5 +1,7 @@
# gtable (development version)
+* General upkeep
+
# gtable 0.3.1
* Re-documented to fix HTML issues in `.Rd`.
diff --git a/cran-comments.md b/cran-comments.md
index 6178675..f045eaf 100644
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -1 +1,16 @@
-This was a patch to fix the HTML in .Rd problems; we did not re-check revdeps.
+General upkeep of package
+
+## revdepcheck results
+
+We checked 91 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 0 new problems
+ * We failed to check 3 packages
+
+Issues with CRAN packages are summarised below.
+
+### Failed to check
+
+* ggPMX (NA)
+* loon.ggplot (NA)
+* tidySEM (NA)
diff --git a/man/gtable-package.Rd b/man/gtable-package.Rd
index ec958c5..28da9c2 100644
--- a/man/gtable-package.Rd
+++ b/man/gtable-package.Rd
@@ -18,11 +18,11 @@ Useful links:
}
\author{
-\strong{Maintainer}: Hadley Wickham \email{hadley@posit.co}
+\strong{Maintainer}: Thomas Lin Pedersen \email{thomas.pedersen@posit.co}
Authors:
\itemize{
- \item Thomas Lin Pedersen \email{thomas.pedersen@posit.co}
+ \item Hadley Wickham \email{hadley@posit.co}
}
Other contributors:
diff --git a/revdep/README.md b/revdep/README.md
index 0c40aa7..cce0984 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,113 +1,10 @@
-# Platform
-
-|field |value |
-|:--------|:----------------------------|
-|version |R version 3.5.1 (2018-07-02) |
-|os |macOS 10.14.3 |
-|system |x86_64, darwin15.6.0 |
-|ui |RStudio |
-|language |(EN) |
-|collate |en_US.UTF-8 |
-|ctype |en_US.UTF-8 |
-|tz |Europe/Copenhagen |
-|date |2019-03-18 |
-
-# Dependencies
-
-|package |old |new |Δ |
-|:-------|:-----|:---|:--|
-|gtable |0.2.0 |NA |* |
-
# Revdeps
-## Couldn't check (7)
-
-|package |version |error |warning |note |
-|:------------------------------------------|:-------|:-----|:-------|:----|
-|[CEMiTool](problems.md#cemitool) |1.4.2 |1 | | |
-|[ClassifyR](problems.md#classifyr) |2.0.10 |2 | |2 |
-|[FindMyFriends](problems.md#findmyfriends) |1.10.0 |1 |1 |2 |
-|[Hmisc](problems.md#hmisc) |4.2-0 |1 | | |
-|[spikeSlabGAM](problems.md#spikeslabgam) |1.1-14 |1 | | |
-|[telefit](problems.md#telefit) |1.0.1 |1 | | |
-|[trelliscopejs](problems.md#trelliscopejs) |0.1.18 |1 | | |
-
-## Broken (1)
-
-|package |version |error |warning |note |
-|:----------------------|:-------|:-----|:-------|:----|
-|[egg](problems.md#egg) |0.4.2 | |__+1__ | |
-
-## All (68)
+## Failed to check (3)
-|package |version |error |warning |note |
-|:------------------------------------------------------------------|:-------|:-----|:-------|:----|
-|[amplican](problems.md#amplican) |1.2.1 | |1 |2 |
-|assignPOP |1.1.4 | | | |
-|[bea.R](problems.md#bear) |1.0.6 | |1 |1 |
-|[behaviorchange](problems.md#behaviorchange) |0.1.0 | | |1 |
-|[BloodCancerMultiOmics2017](problems.md#bloodcancermultiomics2017) |1.0.2 | |1 |3 |
-|BoutrosLab.plotting.general |5.9.2 | | | |
-|braidReports |0.5.3 | | | |
-|[BubbleTree](problems.md#bubbletree) |2.10.0 | |1 |2 |
-|[CEMiTool](problems.md#cemitool) |1.4.2 |1 | | |
-|[ClassifyR](problems.md#classifyr) |2.0.10 |2 | |2 |
-|[condformat](problems.md#condformat) |0.8.0 |1 | |1 |
-|cowplot |0.9.4 | | | |
-|cr17 |0.1.0 | | | |
-|darksky |1.3.0 | | | |
-|dotwhisker |0.5.0 | | | |
-|[egg](problems.md#egg) |0.4.2 | |__+1__ | |
-|[FindMyFriends](problems.md#findmyfriends) |1.10.0 |1 |1 |2 |
-|[GenVisR](problems.md#genvisr) |1.12.1 |2 |1 |4 |
-|[geofacet](problems.md#geofacet) |0.1.10 | | |1 |
-|getmstatistic |0.2.0 | | | |
-|GGally |1.4.0 | | | |
-|[ggalt](problems.md#ggalt) |0.4.0 | | |1 |
-|[ggbio](problems.md#ggbio) |1.28.5 |1 |1 |3 |
-|[ggExtra](problems.md#ggextra) |0.8 | | |1 |
-|ggforce |0.2.1 | | | |
-|[ggplot2](problems.md#ggplot2) |3.1.0 | | |1 |
-|[ggpol](problems.md#ggpol) |0.0.5 | | |1 |
-|[ggpubr](problems.md#ggpubr) |0.2 | | |1 |
-|ggraph |1.0.2 | | | |
-|[ggtern](problems.md#ggtern) |3.1.0 | | |1 |
-|ggupset |0.1.0 | | | |
-|[GOsummaries](problems.md#gosummaries) |2.16.1 | |1 |3 |
-|gridExtra |2.3 | | | |
-|[hierarchicalSets](problems.md#hierarchicalsets) |1.0.2 | | |1 |
-|[Hmisc](problems.md#hmisc) |4.2-0 |1 | | |
-|[IWTomics](problems.md#iwtomics) |1.4.0 | |1 | |
-|lemon |0.4.3 | | | |
-|[mafs](problems.md#mafs) |0.0.3 | | |1 |
-|[metaforest](problems.md#metaforest) |0.1.2 | |1 | |
-|metaplot |0.8.2 | | | |
-|[metR](problems.md#metr) |0.3.0 | | |1 |
-|[mimager](problems.md#mimager) |1.4.0 | |1 |1 |
-|[MultiMeta](problems.md#multimeta) |0.1 | | |1 |
-|multipanelfigure |2.0.2 | | | |
-|[ncappc](problems.md#ncappc) |0.3.0 | | |1 |
-|nlirms |3.4.4 | | | |
-|nmathresh |0.1.4 | | | |
-|oddsratio |1.0.3 | | | |
-|pander |0.6.3 | | | |
-|[patternplot](problems.md#patternplot) |0.2.1 | | |1 |
-|pheatmap |1.0.12 | | | |
-|Plasmidprofiler |0.1.6 | | | |
-|[PTXQC](problems.md#ptxqc) |0.92.5 | | |1 |
-|[RAM](problems.md#ram) |1.2.1.7 | |1 | |
-|[spikeSlabGAM](problems.md#spikeslabgam) |1.1-14 |1 | | |
-|[strvalidator](problems.md#strvalidator) |2.1.0 |1 | | |
-|sugrrants |0.2.3 | | | |
-|superheat |0.1.0 | | | |
-|[tcR](problems.md#tcr) |2.2.3 | |1 |1 |
-|[telefit](problems.md#telefit) |1.0.1 |1 | | |
-|timelineR |0.1.0 | | | |
-|[trackeR](problems.md#tracker) |1.4 | | |1 |
-|treeDA |0.0.4 | | | |
-|[trelliscopejs](problems.md#trelliscopejs) |0.1.18 |1 | | |
-|TRONCO |2.12.0 | | | |
-|[ufs](problems.md#ufs) |0.2.0 | | |2 |
-|userfriendlyscience |0.7.2 | | | |
-|waffle |0.7.0 | | | |
+|package |version |error |warning |note |
+|:-----------|:-------|:-----|:-------|:----|
+|ggPMX |? | | | |
+|loon.ggplot |? | | | |
+|tidySEM |? | | | |
diff --git a/revdep/cran.md b/revdep/cran.md
new file mode 100644
index 0000000..1d05b50
--- /dev/null
+++ b/revdep/cran.md
@@ -0,0 +1,14 @@
+## revdepcheck results
+
+We checked 91 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 0 new problems
+ * We failed to check 3 packages
+
+Issues with CRAN packages are summarised below.
+
+### Failed to check
+
+* ggPMX (NA)
+* loon.ggplot (NA)
+* tidySEM (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
new file mode 100644
index 0000000..2e21562
--- /dev/null
+++ b/revdep/failures.md
@@ -0,0 +1,224 @@
+# ggPMX
+
+
+
+* Version: 1.2.8
+* GitHub: https://github.com/ggPMXdevelopment/ggPMX
+* Source code: https://github.com/cran/ggPMX
+* Date/Publication: 2022-06-17 23:10:02 UTC
+* Number of recursive dependencies: 174
+
+Run `cloud_details(, "ggPMX")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+ [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ]
+ Error: Test failures
+ Execution halted
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 ERROR, 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.8’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+ [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ]
+ Error: Test failures
+ Execution halted
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 ERROR, 2 NOTEs
+
+
+
+
+
+```
+# loon.ggplot
+
+
+
+* Version: 1.3.3
+* GitHub: https://github.com/great-northern-diver/loon.ggplot
+* Source code: https://github.com/cran/loon.ggplot
+* Date/Publication: 2022-11-12 22:30:02 UTC
+* Number of recursive dependencies: 104
+
+Run `cloud_details(, "loon.ggplot")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘loon.ggplot’ version ‘1.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘loon’
+
+Package suggested but not available for checking: ‘zenplots’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘loon.ggplot’ version ‘1.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘loon’
+
+Package suggested but not available for checking: ‘zenplots’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# tidySEM
+
+
+
+* Version: 0.2.3
+* GitHub: https://github.com/cjvanlissa/tidySEM
+* Source code: https://github.com/cran/tidySEM
+* Date/Publication: 2022-04-14 17:50:02 UTC
+* Number of recursive dependencies: 171
+
+Run `cloud_details(, "tidySEM")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
+ ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK
+ ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
diff --git a/revdep/problems.md b/revdep/problems.md
index 72a450f..9a20736 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,3231 +1 @@
-# amplican
-
-Version: 1.2.1
-
-## In both
-
-* checking whether package ‘amplican’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘data.table’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/amplican/new/amplican.Rcheck/00install.out’ for details.
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 13.3Mb
- sub-directories of 1Mb or more:
- doc 12.5Mb
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘CrispRVariants’
- ```
-
-# bea.R
-
-Version: 1.0.6
-
-## In both
-
-* checking whether package ‘bea.R’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘data.table’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/bea.R/new/bea.R.Rcheck/00install.out’ for details.
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’
- ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’
- ‘yaml’
- All declared Imports should be used.
- ```
-
-# behaviorchange
-
-Version: 0.1.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘magrittr’ ‘methods’
- All declared Imports should be used.
- ```
-
-# BloodCancerMultiOmics2017
-
-Version: 1.0.2
-
-## In both
-
-* checking re-building of vignette outputs ... WARNING
- ```
- ...
-
- The following objects are masked from 'package:IRanges':
-
- intersect, setdiff, union
-
- The following objects are masked from 'package:S4Vectors':
-
- intersect, setdiff, union
-
- The following objects are masked from 'package:BiocGenerics':
-
- intersect, setdiff, union
-
- The following objects are masked from 'package:base':
-
- intersect, setdiff, union
-
- Quitting from lines 46-92 (BloodCancerMultiOmics2017.Rmd)
- Error: processing vignette 'BloodCancerMultiOmics2017.Rmd' failed with diagnostics:
- there is no package called 'org.Hs.eg.db'
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘org.Hs.eg.db’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 115.3Mb
- sub-directories of 1Mb or more:
- data 80.0Mb
- doc 26.5Mb
- extdata 8.5Mb
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘vsn’
- ```
-
-# BubbleTree
-
-Version: 2.10.0
-
-## In both
-
-* checking whether package ‘BubbleTree’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘dplyr’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/BubbleTree/new/BubbleTree.Rcheck/00install.out’ for details.
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 29.2Mb
- sub-directories of 1Mb or more:
- data 23.4Mb
- doc 5.3Mb
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- annoByOverlap,Annotate: no visible binding for global variable
- 'queryHits'
- Undefined global functions or variables:
- queryHits
- ```
-
-# CEMiTool
-
-Version: 1.4.2
-
-## In both
-
-* checking whether package ‘CEMiTool’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/new/CEMiTool.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CEMiTool’ ...
-** R
-** data
-*** moving datasets to lazyload DB
-** exec
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘GO.db’
-ERROR: lazy loading failed for package ‘CEMiTool’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/new/CEMiTool.Rcheck/CEMiTool’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CEMiTool’ ...
-** R
-** data
-*** moving datasets to lazyload DB
-** exec
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘GO.db’
-ERROR: lazy loading failed for package ‘CEMiTool’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/old/CEMiTool.Rcheck/CEMiTool’
-
-```
-# ClassifyR
-
-Version: 2.0.10
-
-## In both
-
-* checking examples ... ERROR
- ```
- ...
- + head(tunedParameters(classified))
- + performance(classified)
- + }
- Loading required package: glmnet
- Loading required package: Matrix
- Warning: package ‘Matrix’ was built under R version 3.5.2
-
- Attaching package: ‘Matrix’
-
- The following object is masked from ‘package:S4Vectors’:
-
- expand
-
- Loading required package: foreach
- Loaded glmnet 2.0-16
-
- Error: All cross-validations had an error.
- Error in (function (classes, fdef, mtable) :
- unable to find an inherited method for function ‘calcCVperformance’ for signature ‘"list"’
- Calls: calcCVperformance ->
- Execution halted
- ```
-
-* R CMD check timed out
-
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- ‘parathyroidSE’ ‘mnlogit’
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- .posterior_probs : : no visible global function definition
- for ‘dmvnorm’
- plotFeatureClasses,DataFrame : : no visible binding for
- global variable ‘measurement’
- plotFeatureClasses,DataFrame : : no visible binding for
- global variable ‘..density..’
- plotFeatureClasses,DataFrame : : no visible binding for
- global variable ‘legends grouping’
- samplesMetricMap,list: no visible binding for global variable ‘Class’
- samplesMetricMap,list: no visible binding for global variable ‘name’
- samplesMetricMap,list: no visible binding for global variable ‘type’
- samplesMetricMap,list: no visible binding for global variable ‘Metric’
- selectionPlot,list: no visible binding for global variable ‘Freq’
- Undefined global functions or variables:
- ..density.. Class Freq Metric dmvnorm legends grouping measurement
- name type
- Consider adding
- importFrom("base", "grouping")
- to your NAMESPACE file.
- ```
-
-# condformat
-
-Version: 0.8.0
-
-## In both
-
-* checking tests ...
- ```
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- > library(condformat)
- >
- > test_check("condformat")
- [31m--[39m [31m1. Error: condformat2excel generates a file (@test_rendering.R#42) [39m [31m--------------------------------------------------------[39m
- Please install the xlsx package in order to export to excel
- 1: condformat2excel(condformat(head(iris, n = rows_to_write)), filename = filename) at testthat/test_rendering.R:42
- 2: require_xlsx()
- 3: stop("Please install the xlsx package in order to export to excel")
-
- == testthat results ==========================================================================================================
- OK: 125 SKIPPED: 0 FAILED: 1
- 1. Error: condformat2excel generates a file (@test_rendering.R#42)
-
- Error: testthat unit tests failed
- Execution halted
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘graphics’
- All declared Imports should be used.
- ```
-
-# egg
-
-Version: 0.4.2
-
-## Newly broken
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error in re-building vignettes:
- ...
- Loading required package: ggplot2
- `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`.
- Quitting from lines 291-298 (Ecosystem.Rmd)
- Error: processing vignette 'Ecosystem.Rmd' failed with diagnostics:
- invalid 'clip' value
- Execution halted
- ```
-
-# FindMyFriends
-
-Version: 1.10.0
-
-## In both
-
-* R CMD check timed out
-
-
-* checking for code/documentation mismatches ... WARNING
- ```
- Functions or methods with usage in documentation object 'pgVirtual-class' but not in code:
- as
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.0Mb
- sub-directories of 1Mb or more:
- R 1.0Mb
- doc 1.5Mb
- extdata 1.8Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Unexported objects imported by ':::' calls:
- ‘gtable:::insert.unit’ ‘gtable:::z_arrange_gtables’
- See the note in ?`:::` about the use of this operator.
- ```
-
-# GenVisR
-
-Version: 1.12.1
-
-## In both
-
-* checking examples ... ERROR
- ```
- Running examples in ‘GenVisR-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: Lolliplot-class
- > ### Title: Class Lolliplot
- > ### Aliases: Lolliplot-class Lolliplot
- >
- > ### ** Examples
- >
- > # Load a pre-existing data set
- > dataset <- PIK3CA
- >
- > # mode 1, amino acid changes are not present
- >
- > library(TxDb.Hsapiens.UCSC.hg38.knownGene)
- Error in library(TxDb.Hsapiens.UCSC.hg38.knownGene) :
- there is no package called ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
- Execution halted
- ```
-
-* checking tests ...
- ```
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- [31m──[39m [31m3. Error: (unknown) (@test-genCov_qual.R#1) [39m [31m───────────────────────────────────────────────────────────────────────────────[39m
- there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
- 1: suppressPackageStartupMessages(library(BSgenome.Hsapiens.UCSC.hg19)) at testthat/test-genCov_qual.R:1
- 2: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
- 3: library(BSgenome.Hsapiens.UCSC.hg19)
- 4: stop(txt, domain = NA)
-
- ══ testthat results ══════════════════════════════════════════════════════════════════════════════════════════════════════════
- OK: 454 SKIPPED: 35 FAILED: 3
- 1. Error: (unknown) (@test-Lolliplot-class.R#3)
- 2. Error: (unknown) (@test-VEP-class.R#306)
- 3. Error: (unknown) (@test-genCov_qual.R#1)
-
- Error: testthat unit tests failed
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- ...
- This function is part of the new S4 feature and is under active development
- This function is part of the new S4 feature and is under active development
- Warning in .local(object, labelColumn, verbose, ...) :
- Removed 1212 rows from the data which harbored duplicate genomic locations
- Warning in .local(object, labelColumn, verbose, ...) :
- Removed 1212 rows from the data which harbored duplicate genomic locations
- Warning in has_utility("convert", "ImageMagick") :
- ImageMagick not installed or not in PATH
- Warning in .local(object, labelColumn, verbose, ...) :
- Removed 1212 rows from the data which harbored duplicate genomic locations
- Warning in .local(object, labelColumn, verbose, ...) :
- Removed 1212 rows from the data which harbored duplicate genomic locations
- Warning: package 'data.table' was built under R version 3.5.2
- Warning in setMutationHierarchy(object, mutationHierarchy, verbose) :
- The following mutations were found in the input however were not specified in the mutationHierarchy! upstream_gene_variant, splice_region_variant,non_coding_transcript_exon_variant, intron_variant,non_coding_transcript_variant, downstream_gene_variant, non_coding_transcript_exon_variant, 5_prime_UTR_variant, intron_variant, stop_lost, regulatory_region_variant, 3_prime_UTR_variant, intron_variant,NMD_transcript_variant, missense_variant,NMD_transcript_variant, inframe_insertion, inframe_deletion, frameshift_variant, 3_prime_UTR_variant,NMD_transcript_variant, splice_acceptor_variant,non_coding_transcript_variant, missense_variant,splice_region_variant,NMD_transcript_variant, synonymous_variant, synonymous_variant,NMD_transcript_variant, splice_donor_variant,non_coding_transcript_variant, start_lost, stop_gained,NMD_transcript_variant, 5_prime_UTR_variant,NMD_transcript_variant adding these in as least important and assigning random colors!
- Warning in .local(object, labelColumn, verbose, ...) :
- Removed 1212 rows from the data which harbored duplicate genomic locations
- Quitting from lines 224-233 (Upcoming_Features.Rmd)
- Error: processing vignette 'Upcoming_Features.Rmd' failed with diagnostics:
- there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- ‘BSgenome.Hsapiens.UCSC.hg19’ ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
- ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ ‘BSgenome.Hsapiens.UCSC.hg38’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 14.0Mb
- sub-directories of 1Mb or more:
- doc 11.5Mb
- extdata 1.0Mb
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘reshape2’
- All declared Imports should be used.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- setTierTwo,data.table : a: no visible binding for global variable ‘tmp’
- toLolliplot,GMS: no visible binding for global variable ‘missingINdex’
- toLolliplot,VEP: no visible binding for global variable ‘missingINdex’
- Undefined global functions or variables:
- missingINdex tmp
- ```
-
-# geofacet
-
-Version: 0.1.10
-
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 217 marked UTF-8 strings
- ```
-
-# ggalt
-
-Version: 0.4.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘plotly’
- All declared Imports should be used.
- ```
-
-# ggbio
-
-Version: 1.28.5
-
-## In both
-
-* checking examples ... ERROR
- ```
- ...
- > ###################################################
- > p1 <- autoplot(xRleList, stat = "identity")
- > p2 <- autoplot(xRleList, stat = "identity", geom = "point", color = "red")
- > tracks('line' = p1, "point" = p2)
- >
- >
- > ###################################################
- > ### code chunk number 25: rlel-slice
- > ###################################################
- > p1 <- autoplot(xRleList, type = "viewMaxs", stat = "slice", lower = 5)
- > p2 <- autoplot(xRleList, type = "viewMaxs", stat = "slice", lower = 5, geom = "heatmap")
- > tracks('bar' = p1, "heatmap" = p2)
- >
- >
- > ###################################################
- > ### code chunk number 26: txdb
- > ###################################################
- > library(TxDb.Hsapiens.UCSC.hg19.knownGene)
- Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) :
- there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene'
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- ...
- expand.grid
-
- Loading required package: IRanges
- Loading required package: GenomeInfoDb
- ordinary text without R code
-
- label: unnamed-chunk-5
- Quitting from lines 143-157 (ggbio.Rnw)
- Error in library(Homo.sapiens) :
- there is no package called 'Homo.sapiens'
- Calls: knit2pdf ... withCallingHandlers -> withVisible -> eval -> eval -> library
- In addition: Warning messages:
- 1: `panel.margin` is deprecated. Please use `panel.spacing` property instead
- 2: `panel.margin` is deprecated. Please use `panel.spacing` property instead
- 3: `panel.margin` is deprecated. Please use `panel.spacing` property instead
- 4: `panel.margin` is deprecated. Please use `panel.spacing` property instead
- Execution halted
- make: *** [ggbio.pdf] Error 1
- Error in buildVignettes(dir = "/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/ggbio/new/ggbio.Rcheck/vign_test/ggbio") :
- running 'make' failed
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- ‘BSgenome.Hsapiens.UCSC.hg19’ ‘Homo.sapiens’
- ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
- ‘TxDb.Mmusculus.UCSC.mm9.knownGene’ ‘EnsDb.Hsapiens.v75’
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- ':::' call which should be '::': 'ggplot2:::set_last_plot'
- See the note in ?`:::` about the use of this operator.
- Unexported objects imported by ':::' calls:
- 'S4Vectors:::top_prenv' 'ggplot2:::add_ggplot' 'ggplot2:::cunion'
- 'ggplot2:::rename_aes' 'ggplot2:::rescale01'
- See the note in ?`:::` about the use of this operator.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- layout_karyogram,GRanges: no visible binding for global variable 'xend'
- layout_karyogram,GRanges: no visible binding for global variable 'yend'
- layout_karyogram,GRanges: no visible binding for global variable 'y2'
- layout_karyogram,GRanges: no visible binding for global variable
- 'yend2'
- layout_karyogram,GRanges: no visible binding for global variable 'name'
- plotFragLength,character-GRanges: no visible binding for global
- variable '.fragLength'
- plotSpliceSum,character-EnsDb: possible error in GRangesFilter(which,
- condition = "overlapping"): unused argument (condition =
- "overlapping")
- stat_mismatch,GRanges: no visible binding for global variable 'sts'
- stat_mismatch,GRanges: no visible binding for global variable 'eds'
- stat_mismatch,GRanges: no visible binding for global variable 'read'
- Undefined global functions or variables:
- .fragLength .layout_circle.stats .x breaks coefs data eds fe fl
- gieStain ideoCyto indexProbesProcessed midpoint mt name read se
- stepping sts value variable x xend y y.text y2 yend yend2
- Consider adding
- importFrom("utils", "data")
- to your NAMESPACE file.
- ```
-
-# ggExtra
-
-Version: 0.8
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘grDevices’
- All declared Imports should be used.
- ```
-
-# ggplot2
-
-Version: 3.1.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘mgcv’ ‘reshape2’ ‘viridisLite’
- All declared Imports should be used.
- ```
-
-# ggpol
-
-Version: 0.0.5
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘dplyr’ ‘grDevices’
- All declared Imports should be used.
- ```
-
-# ggpubr
-
-Version: 0.2
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘FactoMineR’
- ```
-
-# ggtern
-
-Version: 3.1.0
-
-## In both
-
-* checking Rd cross-references ... NOTE
- ```
- Package unavailable to check Rd xrefs: ‘chemometrics’
- ```
-
-# GOsummaries
-
-Version: 2.16.1
-
-## In both
-
-* checking running R code from vignettes ...
- ```
- ‘GOsummaries-basics.Rnw’ ... failed
- WARNING
- Errors in running code in vignettes:
- when running code in ‘GOsummaries-basics.Rnw’
- ...
-
- > BiocStyle::latex()
-
- When sourcing ‘GOsummaries-basics.R’:
- Error: there is no package called ‘BiocStyle’
- Execution halted
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- panel_boxplot: no visible binding for global variable ‘x’
- panel_boxplot: no visible binding for global variable ‘y’
- panel_boxplot: no visible binding for global variable ‘Class’
- panel_dummy: no visible binding for global variable ‘y’
- panel_dummy: no visible binding for global variable ‘x’
- plotWordcloud: no visible global function definition for
- ‘colorRampPalette’
- plotWordcloud: no visible global function definition for ‘runif’
- plot_motor: no visible global function definition for ‘dev.off’
- print.gosummaries: no visible global function definition for ‘head’
- pspearman: no visible global function definition for ‘pt’
- spearman_mds: no visible global function definition for ‘cor’
- Undefined global functions or variables:
- Class bmp boxplot.stats colorRampPalette cor dev.off head jpeg
- packageVersion pdf png pt runif tiff x y
- Consider adding
- importFrom("grDevices", "bmp", "boxplot.stats", "colorRampPalette",
- "dev.off", "jpeg", "pdf", "png", "tiff")
- importFrom("stats", "cor", "pt", "runif")
- importFrom("utils", "head", "packageVersion")
- to your NAMESPACE file.
- ```
-
-* checking for unstated dependencies in vignettes ... NOTE
- ```
- '::' or ':::' import not declared from: ‘BiocStyle’
- ```
-
-* checking re-building of vignette outputs ... NOTE
- ```
- Error in re-building vignettes:
- ...
-
- Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics:
- chunk 1 (label = style-Sweave)
- Error in loadNamespace(name) : there is no package called ‘BiocStyle’
- Execution halted
- ```
-
-# hierarchicalSets
-
-Version: 1.0.2
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Unexported objects imported by ':::' calls:
- ‘ggplot2:::build_guides’ ‘ggplot2:::guide_axis’
- ‘ggplot2:::scales_list’
- See the note in ?`:::` about the use of this operator.
- ```
-
-# Hmisc
-
-Version: 4.2-0
-
-## In both
-
-* checking whether package ‘Hmisc’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/new/Hmisc.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘Hmisc’ ...
-** package ‘Hmisc’ successfully unpacked and MD5 sums checked
-** libs
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Hmisc.c -o Hmisc.o
-gfortran -fPIC -g -O2 -c cidxcn.f -o cidxcn.o
-gfortran -fPIC -g -O2 -c cidxcp.f -o cidxcp.o
-gfortran -fPIC -g -O2 -c hoeffd.f -o hoeffd.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
-gfortran -fPIC -g -O2 -c jacklins.f -o jacklins.o
-gfortran -fPIC -g -O2 -c largrec.f -o largrec.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mChoice.c -o mChoice.o
-gfortran -fPIC -g -O2 -c maxempr.f -o maxempr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nstr.c -o nstr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ranksort.c -o ranksort.o
-gfortran -fPIC -g -O2 -c rcorr.f -o rcorr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c string_box.c -o string_box.o
-gfortran -fPIC -g -O2 -c wclosest.f -o wclosest.o
-clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [Hmisc.so] Error 1
-ERROR: compilation failed for package ‘Hmisc’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/new/Hmisc.Rcheck/Hmisc’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘Hmisc’ ...
-** package ‘Hmisc’ successfully unpacked and MD5 sums checked
-** libs
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Hmisc.c -o Hmisc.o
-gfortran -fPIC -g -O2 -c cidxcn.f -o cidxcn.o
-gfortran -fPIC -g -O2 -c cidxcp.f -o cidxcp.o
-gfortran -fPIC -g -O2 -c hoeffd.f -o hoeffd.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
-gfortran -fPIC -g -O2 -c jacklins.f -o jacklins.o
-gfortran -fPIC -g -O2 -c largrec.f -o largrec.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mChoice.c -o mChoice.o
-gfortran -fPIC -g -O2 -c maxempr.f -o maxempr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nstr.c -o nstr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ranksort.c -o ranksort.o
-gfortran -fPIC -g -O2 -c rcorr.f -o rcorr.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c string_box.c -o string_box.o
-gfortran -fPIC -g -O2 -c wclosest.f -o wclosest.o
-clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [Hmisc.so] Error 1
-ERROR: compilation failed for package ‘Hmisc’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/old/Hmisc.Rcheck/Hmisc’
-
-```
-# IWTomics
-
-Version: 1.4.0
-
-## In both
-
-* checking data for ASCII and uncompressed saves ... WARNING
- ```
- Warning: package needs dependence on R (>= 2.10)
- ```
-
-# mafs
-
-Version: 0.0.3
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘Rcpp’ ‘cmprsk’ ‘colorspace’ ‘etm’ ‘fracdiff’ ‘gtable’ ‘munsell’
- ‘numDeriv’ ‘plyr’ ‘quadprog’ ‘scales’ ‘timeDate’ ‘tseries’ ‘zoo’
- All declared Imports should be used.
- ```
-
-# metaforest
-
-Version: 0.1.2
-
-## In both
-
-* checking whether package ‘metaforest’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘Matrix’ was built under R version 3.5.2
- Warning: package ‘ranger’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/metaforest/new/metaforest.Rcheck/00install.out’ for details.
- ```
-
-# metR
-
-Version: 0.3.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘curl’
- All declared Imports should be used.
- ```
-
-# mimager
-
-Version: 1.4.0
-
-## In both
-
-* checking re-building of vignette outputs ... WARNING
- ```
- ...
-
- The following objects are masked from 'package:base':
-
- Filter, Find, Map, Position, Reduce, anyDuplicated, append,
- as.data.frame, basename, cbind, colMeans, colSums, colnames,
- dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
- intersect, is.unsorted, lapply, lengths, mapply, match, mget,
- order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
- rowMeans, rowSums, rownames, sapply, setdiff, sort, table,
- tapply, union, unique, unsplit, which, which.max, which.min
-
- Welcome to Bioconductor
-
- Vignettes contain introductory material; view with
- 'browseVignettes()'. To cite Bioconductor, see
- 'citation("Biobase")', and for packages 'citation("pkgname")'.
-
- Quitting from lines 38-41 (introduction.Rmd)
- Error: processing vignette 'introduction.Rmd' failed with diagnostics:
- there is no package called 'affydata'
- Execution halted
- ```
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- ‘affydata’ ‘oligoData’ ‘pd.hugene.1.0.st.v1’
- ```
-
-# MultiMeta
-
-Version: 0.1
-
-## In both
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- multi_meta: no visible global function definition for ‘write.table’
- multi_meta: no visible global function definition for ‘read.table’
- multi_meta: no visible global function definition for ‘pchisq’
- qqplotter: no visible global function definition for ‘read.table’
- qqplotter: no visible global function definition for ‘qchisq’
- qqplotter: no visible global function definition for ‘ppoints’
- qqplotter: no visible global function definition for ‘median’
- qqplotter: no visible global function definition for ‘pchisq’
- qqplotter: no visible global function definition for ‘pdf’
- qqplotter: no visible global function definition for ‘plot’
- qqplotter: no visible global function definition for ‘abline’
- qqplotter: no visible global function definition for ‘dev.off’
- Undefined global functions or variables:
- abline axis colorRampPalette cov2cor dev.off median pchisq pdf plot
- points ppoints qchisq read.table write.table
- Consider adding
- importFrom("grDevices", "colorRampPalette", "dev.off", "pdf")
- importFrom("graphics", "abline", "axis", "plot", "points")
- importFrom("stats", "cov2cor", "median", "pchisq", "ppoints", "qchisq")
- importFrom("utils", "read.table", "write.table")
- to your NAMESPACE file.
- ```
-
-# ncappc
-
-Version: 0.3.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘bookdown’
- All declared Imports should be used.
- ```
-
-# patternplot
-
-Version: 0.2.1
-
-## In both
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-# PTXQC
-
-Version: 0.92.5
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 8.3Mb
- sub-directories of 1Mb or more:
- doc 4.6Mb
- examples 2.5Mb
- ```
-
-# RAM
-
-Version: 1.2.1.7
-
-## In both
-
-* checking whether package ‘RAM’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘vegan’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/RAM/new/RAM.Rcheck/00install.out’ for details.
- ```
-
-# spikeSlabGAM
-
-Version: 1.1-14
-
-## In both
-
-* checking whether package ‘spikeSlabGAM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘spikeSlabGAM’ ...
-** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked
-** libs
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sampler.c -o sampler.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o
-clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [spikeSlabGAM.so] Error 1
-ERROR: compilation failed for package ‘spikeSlabGAM’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/new/spikeSlabGAM.Rcheck/spikeSlabGAM’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘spikeSlabGAM’ ...
-** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked
-** libs
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sampler.c -o sampler.o
-clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o
-clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [spikeSlabGAM.so] Error 1
-ERROR: compilation failed for package ‘spikeSlabGAM’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/old/spikeSlabGAM.Rcheck/spikeSlabGAM’
-
-```
-# strvalidator
-
-Version: 2.1.0
-
-## In both
-
-* checking package dependencies ... ERROR
- ```
- Packages required but not available: ‘gWidgets2RGtk2’ ‘RGtk2’
-
- See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
- manual.
- ```
-
-# tcR
-
-Version: 2.2.3
-
-## In both
-
-* checking whether package ‘tcR’ can be installed ... WARNING
- ```
- Found the following significant warnings:
- Warning: package ‘dplyr’ was built under R version 3.5.2
- Warning: package ‘igraph’ was built under R version 3.5.2
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/tcR/new/tcR.Rcheck/00install.out’ for details.
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.1Mb
- sub-directories of 1Mb or more:
- data 1.4Mb
- doc 3.9Mb
- ```
-
-# telefit
-
-Version: 1.0.1
-
-## In both
-
-* checking whether package ‘telefit’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/new/telefit.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘telefit’ ...
-** package ‘telefit’ successfully unpacked and MD5 sums checked
-** libs
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c GibbsSampler.cpp -o GibbsSampler.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RWSampler.cpp -o RWSampler.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c covs.cpp -o covs.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c distributions.cpp -o distributions.o
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c glm_gmrf.cpp -o glm_gmrf.o
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mcstat.cpp -o mcstat.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c numAlg.cpp -o numAlg.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpglmmod.cpp -o stpglmmod.o
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpmod.cpp -o stpmod.o
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-stpmod.cpp:967:8: warning: unused variable 'ncats' [-Wunused-variable]
- int ncats = cat_breaks.n_elem + 1;
- ^
-stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field]
- double CProposed_logdet, one, R;
- ^
-19 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpnotation.cpp -o stpnotation.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcMod.cpp -o svcMod.o
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcPredict.cpp -o svcPredict.o
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c transformations.cpp -o transformations.o
-clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [telefit.so] Error 1
-ERROR: compilation failed for package ‘telefit’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/new/telefit.Rcheck/telefit’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘telefit’ ...
-** package ‘telefit’ successfully unpacked and MD5 sums checked
-** libs
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c GibbsSampler.cpp -o GibbsSampler.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RWSampler.cpp -o RWSampler.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c covs.cpp -o covs.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c distributions.cpp -o distributions.o
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c glm_gmrf.cpp -o glm_gmrf.o
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mcstat.cpp -o mcstat.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c numAlg.cpp -o numAlg.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpglmmod.cpp -o stpglmmod.o
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpmod.cpp -o stpmod.o
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-stpmod.cpp:967:8: warning: unused variable 'ncats' [-Wunused-variable]
- int ncats = cat_breaks.n_elem + 1;
- ^
-stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field]
- double CProposed_logdet, one, R;
- ^
-19 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpnotation.cpp -o stpnotation.o
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcMod.cpp -o svcMod.o
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcPredict.cpp -o svcPredict.o
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c transformations.cpp -o transformations.o
-clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [telefit.so] Error 1
-ERROR: compilation failed for package ‘telefit’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/old/telefit.Rcheck/telefit’
-
-```
-# trackeR
-
-Version: 1.4
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 13.9Mb
- sub-directories of 1Mb or more:
- data 2.1Mb
- doc 2.7Mb
- extdata 8.4Mb
- ```
-
-# trelliscopejs
-
-Version: 0.1.18
-
-## In both
-
-* checking whether package ‘trelliscopejs’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/new/trelliscopejs.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘trelliscopejs’ ...
-** package ‘trelliscopejs’ successfully unpacked and MD5 sums checked
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘mclust’
-ERROR: lazy loading failed for package ‘trelliscopejs’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/new/trelliscopejs.Rcheck/trelliscopejs’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘trelliscopejs’ ...
-** package ‘trelliscopejs’ successfully unpacked and MD5 sums checked
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘mclust’
-ERROR: lazy loading failed for package ‘trelliscopejs’
-* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/old/trelliscopejs.Rcheck/trelliscopejs’
-
-```
-# ufs
-
-Version: 0.2.0
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘viridis’
- All declared Imports should be used.
- ```
-
-* checking Rd cross-references ... NOTE
- ```
- Packages unavailable to check Rd xrefs: ‘userfriendlyscience’, ‘behaviorchange’, ‘MBESS’
- ```
-
+*Wow, no problems at all. :)*
\ No newline at end of file