diff --git a/cran-comments.md b/cran-comments.md index b99e1b09..a51fe690 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,10 +1,6 @@ -The previous release had a major bug which effected a number of users, this release fixes that bug. - -This release also changes the maintainer from Gábor Csárdi to Jim Hester. - ## Test environments -* local OS X install, R 3.5.3 -* ubuntu 14.04 (on travis-ci), R 3.5.3 +* local OS X install, R 3.6.0 +* ubuntu 14.04 (on travis-ci), R 3.6.0 * win-builder (devel and release) ## R CMD check results diff --git a/revdep/README.md b/revdep/README.md index d2f8457c..c8252bbc 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -10,19 +10,42 @@ |collate |en_US.UTF-8 | |ctype |en_US.UTF-8 | |tz |America/New_York | -|date |2019-06-21 | +|date |2019-06-24 | # Dependencies -|package |old |new |Δ | -|:-------|:-----|:----------|:--| -|remotes |2.0.4 |2.0.4.9000 |* | +|package |old |new |Δ | +|:-------|:-----|:-----|:--| +|remotes |2.0.4 |2.1.0 |* | # Revdeps ## Failed to check (1) -|package |version |error |warning |note | -|:-------|:-------|:-----|:-------|:----| -|RxODE |0.9.0-8 |1 | |1 | +|package |version |error |warning |note | +|:--------------------------|:-------|:-----|:-------|:----| +|[RxODE](failures.md#rxode) |0.9.0-8 |1 | |1 | + +## All (18) + +|package |version |error |warning |note | +|:----------------------------------------|:-------|:-----|:-------|:----| +|automagic |0.5.1 | | | | +|[BiocManager](problems.md#biocmanager) |1.30.4 |1 | | | +|cyclocomp |1.1.0 | | | | +|devtools |2.0.2 | | | | +|[dynutils](problems.md#dynutils) |1.0.3 | | |1 | +|[icesTAF](problems.md#icestaf) |3.1-1 | | |1 | +|inlmisc |0.4.5 | | | | +|jetpack |0.4.2 | | | | +|librarian |1.7.0 | | | | +|[opencpu](problems.md#opencpu) |2.1.2 | | |1 | +|Orcs |1.2.0 | | | | +|pacman |0.5.1 | | | | +|[pct](problems.md#pct) |0.2.2 | | |1 | +|[reproducible](problems.md#reproducible) |0.2.8 |1 | | | +|[RxODE](failures.md#rxode) |0.9.0-8 |1 | |1 | +|[sapfluxnetr](problems.md#sapfluxnetr) |0.0.7 | | |1 | +|tinyProject |0.6.1 | | | | +|xfun |0.7 | | | | diff --git a/revdep/problems.md b/revdep/problems.md index 9a207363..a2a5bfb9 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1 +1,253 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# BiocManager + +
+ +* Version: 1.30.4 +* Source code: https://github.com/cran/BiocManager +* BugReports: https://github.com/Bioconductor/BiocManager/issues +* Date/Publication: 2018-11-13 08:40:10 UTC +* Number of recursive dependencies: 30 + +Run `revdep_details(,"BiocManager")` for more info + +
+ +## In both + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > + > test_check("BiocManager") + ── 1. Error: .version_validity('devel') works (@test_version.R#87) ──────────── + non-character object(s) + 1: expect_true(startsWith(.version_validity("devel"), test)) at testthat/test_version.R:87 + 2: quasi_label(enquo(object), label, arg = "object") + 3: eval_bare(get_expr(quo), get_env(quo)) + 4: startsWith(.version_validity("devel"), test) + + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 78 SKIPPED: 2 WARNINGS: 1 FAILED: 1 + 1. Error: .version_validity('devel') works (@test_version.R#87) + + Error: testthat unit tests failed + Execution halted + ``` + +# dynutils + +
+ +* Version: 1.0.3 +* Source code: https://github.com/cran/dynutils +* URL: http://github.com/dynverse/dynutils +* BugReports: https://github.com/dynverse/dynutils/issues +* Date/Publication: 2019-05-02 12:10:03 UTC +* Number of recursive dependencies: 67 + +Run `revdep_details(,"dynutils")` for more info + +
+ +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘desc’ + All declared Imports should be used. + ``` + +# icesTAF + +
+ +* Version: 3.1-1 +* Source code: https://github.com/cran/icesTAF +* URL: http://taf.ices.dk +* Date/Publication: 2019-05-24 16:11:33 UTC +* Number of recursive dependencies: 7 + +Run `revdep_details(,"icesTAF")` for more info + +
+ +## In both + +* checking Rd cross-references ... NOTE + ``` + Package unavailable to check Rd xrefs: ‘icesAdvice’ + ``` + +# opencpu + +
+ +* Version: 2.1.2 +* Source code: https://github.com/cran/opencpu +* URL: https://www.opencpu.org (website) https://github.com/opencpu/opencpu#readme (devel) +* BugReports: https://github.com/opencpu/opencpu/issues +* Date/Publication: 2019-05-12 17:10:10 UTC +* Number of recursive dependencies: 57 + +Run `revdep_details(,"opencpu")` for more info + +
+ +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 4 marked UTF-8 strings + ``` + +# pct + +
+ +* Version: 0.2.2 +* Source code: https://github.com/cran/pct +* URL: https://itsleeds.github.io/pct/, https://github.com/ITSLeeds/pct +* BugReports: https://github.com/ITSLeeds/pct/issues +* Date/Publication: 2019-06-23 17:10:02 UTC +* Number of recursive dependencies: 105 + +Run `revdep_details(,"pct")` for more info + +
+ +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 11 marked UTF-8 strings + ``` + +# reproducible + +
+ +* Version: 0.2.8 +* Source code: https://github.com/cran/reproducible +* URL: http://reproducible.predictiveecology.org, https://github.com/PredictiveEcology/reproducible +* BugReports: https://github.com/PredictiveEcology/reproducible/issues +* Date/Publication: 2019-03-18 18:20:03 UTC +* Number of recursive dependencies: 108 + +Run `revdep_details(,"reproducible")` for more info + +
+ +## In both + +* checking tests ... + ``` + ERROR + Running the tests in ‘tests/test-all.R’ failed. + Last 13 lines of output: + 4 readRDS Whole Cache call 0.1675601006 secs + objectNames hashElements hash objSize + 1 file file c92a272d3d3f3873 24110 + 2 .FUN .FUN 7a8f2865ef4bc06d 1256 + functionName component elapsedTime units + 1 readRDS Hashing 0.0008699894 secs + 2 readRDS Loading from memoise version of repo 0.1873638630 secs + 3 readRDS Whole Cache call 0.3113448620 secs + ══ testthat results ═══════════════════════════════════════════════════════════ + OK: 259 SKIPPED: 66 WARNINGS: 0 FAILED: 2 + 1. Failure: test asPath (@test-cache.R#402) + 2. Failure: test asPath (@test-cache.R#414) + + Error: testthat unit tests failed + Execution halted + ``` + +# RxODE + +
+ +* Version: 0.9.0-8 +* Source code: https://github.com/cran/RxODE +* URL: https://nlmixrdevelopment.github.io/RxODE/ +* BugReports: https://github.com/nlmixrdevelopment/RxODE/issues +* Date/Publication: 2019-06-21 08:20:35 UTC +* Number of recursive dependencies: 114 + +Run `revdep_details(,"RxODE")` for more info + +
+ +## In both + +* checking whether package ‘RxODE’ can be installed ... ERROR + ``` + Installation failed. + See ‘.../revdep/checks.noindex/RxODE/new/RxODE.Rcheck/00install.out’ for details. + ``` + +* checking package dependencies ... NOTE + ``` + Package suggested but not available for checking: ‘installr’ + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘RxODE’ ... +** package ‘RxODE’ successfully unpacked and MD5 sums checked +** using staged installation +checking for gcc... ccache /usr/local/Cellar/llvm/8.0.0/bin/clang +checking whether the C compiler works... yes +checking for C compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... configure: error: in `.../revdep/checks.noindex/RxODE/new/RxODE.Rcheck/00_pkg_src/RxODE': +configure: error: cannot run C compiled programs. +If you meant to cross compile, use `--host'. +See `config.log' for more details +ERROR: configuration failed for package ‘RxODE’ +* removing ‘.../revdep/checks.noindex/RxODE/new/RxODE.Rcheck/RxODE’ + +``` +### CRAN + +``` +* installing *source* package ‘RxODE’ ... +** package ‘RxODE’ successfully unpacked and MD5 sums checked +** using staged installation +checking for gcc... ccache /usr/local/Cellar/llvm/8.0.0/bin/clang +checking whether the C compiler works... yes +checking for C compiler default output file name... a.out +checking for suffix of executables... +checking whether we are cross compiling... configure: error: in `.../revdep/checks.noindex/RxODE/old/RxODE.Rcheck/00_pkg_src/RxODE': +configure: error: cannot run C compiled programs. +If you meant to cross compile, use `--host'. +See `config.log' for more details +ERROR: configuration failed for package ‘RxODE’ +* removing ‘.../revdep/checks.noindex/RxODE/old/RxODE.Rcheck/RxODE’ + +``` +# sapfluxnetr + +
+ +* Version: 0.0.7 +* Source code: https://github.com/cran/sapfluxnetr +* URL: https://github.com/sapfluxnet/sapfluxnetr +* BugReports: https://github.com/sapfluxnet/sapfluxnetr/issues +* Date/Publication: 2019-05-01 10:40:03 UTC +* Number of recursive dependencies: 96 + +Run `revdep_details(,"sapfluxnetr")` for more info + +
+ +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 4 marked UTF-8 strings + ``` +