From 8ef43af97d3bc9ffa52abcfeb294b3bd944dfcdd Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Tue, 2 Jul 2024 14:37:28 +0200 Subject: [PATCH 1/4] Remove dependency on `LEVELS()` Closes #1726 --- src/internal/encoding.c | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/src/internal/encoding.c b/src/internal/encoding.c index cd831b33b..022a7034a 100644 --- a/src/internal/encoding.c +++ b/src/internal/encoding.c @@ -189,9 +189,10 @@ bool str_needs_encoding(r_obj* x) { return (!str_is_ascii_or_utf8(x)) && (x != NA_STRING); } +#if (R_VERSION < R_Version(4, 5, 0)) + #define MASK_ASCII 8 #define MASK_UTF8 64 - // The first 128 values are ASCII, and are the same regardless of the encoding. // Otherwise we enforce UTF-8. static inline @@ -200,5 +201,11 @@ bool str_is_ascii_or_utf8(r_obj* x) { return (levels & MASK_ASCII) || (levels & MASK_UTF8); } -#undef MASK_ASCII -#undef MASK_UTF8 +#else + +static inline +bool str_is_ascii_or_utf8(r_obj* x) { + return Rf_charIsUTF8(x); +} + +#endif From 959cb38a764a6e33aba3a2d61416c1ea10cd1bc8 Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Fri, 4 Apr 2025 12:54:38 +0200 Subject: [PATCH 2/4] Remove tests for reencoding unknown encodings --- tests/testthat/_snaps/c-api.md | 7 ------- tests/testthat/helper-c-api.R | 12 ++++++++++-- 2 files changed, 10 insertions(+), 9 deletions(-) diff --git a/tests/testthat/_snaps/c-api.md b/tests/testthat/_snaps/c-api.md index 3f2a6e7e0..1f6e19e27 100644 --- a/tests/testthat/_snaps/c-api.md +++ b/tests/testthat/_snaps/c-api.md @@ -41,10 +41,3 @@ Output ---- - - Code - (expect_error(r_obj_encode_utf8(c(enc, bytes)))) - Output - - diff --git a/tests/testthat/helper-c-api.R b/tests/testthat/helper-c-api.R index 11945d70e..01cc26a0f 100644 --- a/tests/testthat/helper-c-api.R +++ b/tests/testthat/helper-c-api.R @@ -23,10 +23,18 @@ test_encodings <- function() { string <- "\u00B0C" utf8 <- iconv(string, from = Encoding(string), to = "UTF-8") - unknown <- iconv(string, from = Encoding(string), to = "", mark = FALSE) latin1 <- iconv(string, from = Encoding(string), to = "latin1") - list(utf8 = utf8, unknown = unknown, latin1 = latin1) + # We used to be able to detect unknown encodings via `LEVELS()`. In recent + # versions of R we need to use `Rf_charIsUTF8` instead to be conformant to the + # public API but unfortunately it treats unknown encodings as UTF-8. So we + # no longer support this case: + # + # ``` + # unknown <- iconv(string, from = Encoding(string), to = "", mark = FALSE) + # ``` + + list(utf8 = utf8, latin1 = latin1) } expect_utf8_encoded <- function(object) { expect_identical(Encoding(object), rep("UTF-8", length(object))) From 300ecb4b23ce254a097a9d21dc33739fc037cfa5 Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Fri, 4 Apr 2025 14:08:31 +0200 Subject: [PATCH 3/4] Update revdep checks --- revdep/README.md | 255 +- revdep/cran.md | 26 +- revdep/failures.md | 8706 +------------------------------------------- revdep/problems.md | 67 +- 4 files changed, 179 insertions(+), 8875 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 51fa50b71..ec2cf8777 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,250 +1,11 @@ # Revdeps -## Failed to check (237) - -|package |version |error |warning |note | -|:---------------------------|:-------|:-----|:-------|:----| -|aggregateBioVar |? | | | | -|airpart |? | | | | -|alevinQC |? | | | | -|AlpsNMR |? | | | | -|AnVIL |? | | | | -|APL |? | | | | -|ArrayExpress |? | | | | -|autonomics |? | | | | -|bandle |? | | | | -|barcodetrackR |? | | | | -|bayesdfa |1.3.1 |1 | | | -|benchmarkfdrData2019 |? | | | | -|BindingSiteFinder |? | | | | -|BiocBook |? | | | | -|BiocPkgTools |? | | | | -|BiocSet |? | | | | -|biocthis |? | | | | -|BioNERO |? | | | | -|biovizBase |? | | | | -|biscuiteer |? | | | | -|brendaDb |? | | | | -|brolgar |? | | | | -|cageminer |? | | | | -|CBEA |? | | | | -|CBNplot |? | | | | -|cbpManager |? | | | | -|celaref |? | | | | -|CellaRepertorium |? | | | | -|CellBench |? | | | | -|censcyt |? | | | | -|Cepo |? | | | | -|ceRNAnetsim |? | | | | -|cfdnakit |? | | | | -|cfDNAPro |? | | | | -|circRNAprofiler |? | | | | -|CircSeqAlignTk |? | | | | -|CiteFuse |? | | | | -|ClassifyR |? | | | | -|clusterProfiler |? | | | | -|clustifyr |? | | | | -|cogeqc |? | | | | -|comapr |? | | | | -|COMPASS |? | | | | -|ComPrAn |? | | | | -|concordexR |? | | | | -|CoreGx |? | | | | -|cosmosR |? | | | | -|COTAN |? | | | | -|crisprVerse |? | | | | -|cTRAP |? | | | | -|CuratedAtlasQueryR |? | | | | -|curatedMetagenomicData |? | | | | -|curatedTBData |? | | | | -|CyTOFpower |? | | | | -|CytoGLMM |? | | | | -|cytoKernel |? | | | | -|CytoPipeline |? | | | | -|dce |? | | | | -|dearseq |? | | | | -|decoupleR |? | | | | -|DEGreport |? | | | | -|DIAlignR |? | | | | -|dStruct |? | | | | -|easier |? | | | | -|easyalluvial |? | | | | -|easyreporting |? | | | | -|enrichplot |? | | | | -|EpiMix |? | | | | -|escape |? | | | | -|escheR |? | | | | -|evaluator |? | | | | -|extraChIPs |? | | | | -|factR |? | | | | -|fenr |? | | | | -|FindIT2 |? | | | | -|flowGate |? | | | | -|FlowSOM |? | | | | -|flowTime |? | | | | -|gemma.R |? | | | | -|genekitr |? | | | | -|GeneTonic |? | | | | -|GenomicDataCommons |? | | | | -|GeomxTools |? | | | | -|gg4way |? | | | | -|ggbio |? | | | | -|ggcyto |? | | | | -|ggmanh |? | | | | -|ggsc |? | | | | -|ggtree |? | | | | -|ggtreeExtra |? | | | | -|glmGamPoi |? | | | | -|GloScope |? | | | | -|GOSemSim |? | | | | -|grandR |? | | | | -|GRaNIE |? | | | | -|granulator |? | | | | -|graphite |? | | | | -|GSEAmining |? | | | | -|GUIDEseq |? | | | | -|HCAExplorer |? | | | | -|hermes |? | | | | -|HiCDCPlus |? | | | | -|HIPPO |? | | | | -|hoodscanR |? | | | | -|hypeR |? | | | | -|iCNV |? | | | | -|ideal |? | | | | -|idpr |? | | | | -|immcp |? | | | | -|immunotation |? | | | | -|InterCellar |? | | | | -|IntOMICS |? | | | | -|ISAnalytics |? | | | | -|isomiRs |? | | | | -|isoreader |? | | | | -|jsontools |? | | | | -|katdetectr |? | | | | -|ldblock |? | | | | -|lipidr |? | | | | -|loon.ggplot |? | | | | -|mariner |? | | | | -|marr |? | | | | -|MatrixQCvis |? | | | | -|memes |? | | | | -|metabCombiner |? | | | | -|MetaScope |? | | | | -|MethReg |? | | | | -|MetNet |? | | | | -|mia |? | | | | -|miaViz |? | | | | -|microbiomeExplorer |? | | | | -|microbiomeMarker |? | | | | -|MicrobiotaProcess |? | | | | -|microSTASIS |? | | | | -|midasHLA |? | | | | -|mistyR |? | | | | -|MoleculeExperiment |? | | | | -|MOMA |? | | | | -|MOSim |? | | | | -|MQmetrics |? | | | | -|MSA2dist |? | | | | -|MSnID |? | | | | -|MSPrep |? | | | | -|multiGSEA |? | | | | -|MultiRNAflow |? | | | | -|musicatk |? | | | | -|NanoMethViz |? | | | | -|NanoporeRNASeq |? | | | | -|nanotatoR |? | | | | -|NanoTube |? | | | | -|nearBynding |? | | | | -|ngsReports |? | | | | -|nipalsMCIA |? | | | | -|NPARC |? | | | | -|nullranges |? | | | | -|OlinkAnalyze |? | | | | -|OmnipathR |? | | | | -|optimalFlow |? | | | | -|Organism.dplyr |? | | | | -|orthos |? | | | | -|PanomiR |? | | | | -|PanViz |? | | | | -|pareg |? | | | | -|PAST |? | | | | -|PDATK |? | | | | -|PhosR |? | | | | -|plotgardener |? | | | | -|plotGrouper |? | | | | -|plyinteractions |? | | | | -|plyranges |? | | | | -|pmdplyr |? | | | | -|ppcseq |? | | | | -|proActiv |? | | | | -|profileplyr |? | | | | -|ProteoDisco |? | | | | -|protGear |? | | | | -|ptairMS |? | | | | -|qckitfastq |? | | | | -|qmtools |? | | | | -|qPLEXanalyzer |? | | | | -|QTLExperiment |? | | | | -|quantiseqr |? | | | | -|RAIDS |? | | | | -|Rcpi |? | | | | -|ReactomeGraph4R |? | | | | -|restfulSE |? | | | | -|RiboCrypt |? | | | | -|ribor |? | | | | -|rifi |? | | | | -|rifiComparative |? | | | | -|RNAseqCovarImpute |? | | | | -|RVA |? | | | | -|scater |? | | | | -|sccomp |? | | | | -|scFeatureFilter |? | | | | -|scider |? | | | | -|scifer |? | | | | -|scPipe |? | | | | -|SCpubr |? | | | | -|ScreenR |? | | | | -|scRepertoire |? | | | | -|seqCAT |? | | | | -|shinyepico |? | | | | -|single |? | | | | -|singleCellTK |? | | | | -|snapcount |? | | | | -|SpatialCPie |? | | | | -|SpatialFeatureExperiment |? | | | | -|SPIAT |? | | | | -|spicyR |? | | | | -|splatter |? | | | | -|SpotClean |? | | | | -|sSNAPPY |? | | | | -|standR |? | | | | -|StructuralVariantAnnotation |? | | | | -|SummarizedBenchmark |? | | | | -|supersigs |? | | | | -|svaNUMT |? | | | | -|svaRetro |? | | | | -|syntenet |? | | | | -|systemPipeShiny |? | | | | -|tadar |? | | | | -|TBSignatureProfiler |? | | | | -|tidybulk |? | | | | -|tidySingleCellExperiment |? | | | | -|tidySummarizedExperiment |? | | | | -|treeio |? | | | | -|TreeSummarizedExperiment |? | | | | -|triptych |0.1.2 |1 | | | -|tuberculosis |? | | | | -|UMI4Cats |? | | | | -|universalmotif |? | | | | -|variancePartition |? | | | | -|Voyager |? | | | | -|weitrix |? | | | | -|wpm |? | | | | -|wppi |? | | | | - -## New problems (1) - -|package |version |error |warning |note | -|:---------|:-------|:------|:-------|:----| -|[eiCompare](problems.md#eicompare)|3.0.4 |__+2__ | | | +## Failed to check (4) + +|package |version |error |warning |note | +|:----------|:-------|:-----|:-------|:----| +|arealDB |0.9.4 |1 | | | +|bayesdfa |1.3.4 |1 | | | +|fio |0.1.5 |1 | | | +|ontologics |0.7.4 |1 | | | diff --git a/revdep/cran.md b/revdep/cran.md index a48795d6c..40bff431c 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,27 +1,15 @@ ## revdepcheck results -We checked 2412 reverse dependencies (2184 from CRAN + 228 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 2864 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems - * We failed to check 9 packages + * We saw 0 new problems + * We failed to check 4 packages Issues with CRAN packages are summarised below. -### New problems -(This reports the first line of each new failure) - -* eiCompare - checking tests ... ERROR - checking re-building of vignette outputs ... ERROR - ### Failed to check -* bayesdfa (NA) -* genekitr (NA) -* grandR (NA) -* immcp (NA) -* loon.ggplot (NA) -* OlinkAnalyze (NA) -* RVA (NA) -* SCpubr (NA) -* triptych (NA) +* arealDB (NA) +* bayesdfa (NA) +* fio (NA) +* ontologics (NA) diff --git a/revdep/failures.md b/revdep/failures.md index c7f5bd53b..4c44eeae0 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,8333 +1,23 @@ -# aggregateBioVar +# arealDB
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/aggregateBioVar -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "aggregateBioVar")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# airpart - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/airpart -* Number of recursive dependencies: 174 - -Run `revdepcheck::cloud_details(, "airpart")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# alevinQC - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/alevinQC -* Number of recursive dependencies: 98 - -Run `revdepcheck::cloud_details(, "alevinQC")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# AlpsNMR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/AlpsNMR -* Number of recursive dependencies: 175 - -Run `revdepcheck::cloud_details(, "AlpsNMR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# AnVIL - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/AnVIL -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "AnVIL")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# APL - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/APL -* Number of recursive dependencies: 247 - -Run `revdepcheck::cloud_details(, "APL")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ArrayExpress - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ArrayExpress -* Number of recursive dependencies: 59 - -Run `revdepcheck::cloud_details(, "ArrayExpress")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# autonomics - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/autonomics -* Number of recursive dependencies: 203 - -Run `revdepcheck::cloud_details(, "autonomics")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# bandle - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/bandle -* Number of recursive dependencies: 246 - -Run `revdepcheck::cloud_details(, "bandle")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# barcodetrackR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/barcodetrackR -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "barcodetrackR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# bayesdfa - -
- -* Version: 1.3.1 -* GitHub: https://github.com/fate-ewi/bayesdfa -* Source code: https://github.com/cran/bayesdfa -* Date/Publication: 2023-10-11 15:10:02 UTC -* Number of recursive dependencies: 86 - -Run `revdepcheck::cloud_details(, "bayesdfa")` for more info - -
- -## In both - -* checking whether package ‘bayesdfa’ can be installed ... ERROR - ``` - Installation failed. - See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, -... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ - - -``` -### CRAN - -``` -* installing *source* package ‘bayesdfa’ ... -** package ‘bayesdfa’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -using C++ compiler: ‘g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0’ -using C++17 - - -g++ -std=gnu++17 -I"/opt/R/4.3.1/lib/R/include" -DNDEBUG -I"../inst/include" -I"/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/opt/R/4.3.1/lib/R/site-library/BH/include' -I'/opt/R/4.3.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -I'/opt/R/4.3.1/lib/R/site-library/rstan/include' -I'/opt/R/4.3.1/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/opt/R/4.3.1/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from /opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397, -... -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:35:90: required from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Options = 0; Eigen::internal::evaluator >::XprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>, Eigen::Matrix, 0>]’ -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Product.h:132:22: required from ‘Eigen::internal::dense_product_base::operator const Scalar() const [with Lhs = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose > >, Eigen::Matrix, 0>; Rhs = Eigen::Matrix; int Option = 0; Eigen::internal::dense_product_base::Scalar = double]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:56: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_dfa_namespace::model_dfa; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ -/opt/R/4.3.1/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:10: required from here -/opt/R/4.3.1/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__vector(2) double’} [-Wignored-attributes] -g++: fatal error: Killed signal terminated program cc1plus -compilation terminated. -make: *** [/opt/R/4.3.1/lib/R/etc/Makeconf:198: stanExports_dfa.o] Error 1 -ERROR: compilation failed for package ‘bayesdfa’ -* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ - - -``` -# benchmarkfdrData2019 - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/benchmarkfdrData2019 -* Number of recursive dependencies: 142 - -Run `revdepcheck::cloud_details(, "benchmarkfdrData2019")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# BindingSiteFinder - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/BindingSiteFinder -* Number of recursive dependencies: 213 - -Run `revdepcheck::cloud_details(, "BindingSiteFinder")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# BiocBook - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/BiocBook -* Number of recursive dependencies: 92 - -Run `revdepcheck::cloud_details(, "BiocBook")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# BiocPkgTools - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/BiocPkgTools -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "BiocPkgTools")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# BiocSet - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/BiocSet -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "BiocSet")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# biocthis - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/biocthis -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "biocthis")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# BioNERO - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/BioNERO -* Number of recursive dependencies: 179 - -Run `revdepcheck::cloud_details(, "BioNERO")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# biovizBase - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/biovizBase -* Number of recursive dependencies: 142 - -Run `revdepcheck::cloud_details(, "biovizBase")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# biscuiteer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/biscuiteer -* Number of recursive dependencies: 223 - -Run `revdepcheck::cloud_details(, "biscuiteer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# brendaDb - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/brendaDb -* Number of recursive dependencies: 120 - -Run `revdepcheck::cloud_details(, "brendaDb")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# brolgar - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/brolgar -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "brolgar")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cageminer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cageminer -* Number of recursive dependencies: 214 - -Run `revdepcheck::cloud_details(, "cageminer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CBEA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CBEA -* Number of recursive dependencies: 236 - -Run `revdepcheck::cloud_details(, "CBEA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CBNplot - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CBNplot -* Number of recursive dependencies: 251 - -Run `revdepcheck::cloud_details(, "CBNplot")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cbpManager - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cbpManager -* Number of recursive dependencies: 97 - -Run `revdepcheck::cloud_details(, "cbpManager")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# celaref - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/celaref -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "celaref")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CellaRepertorium - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CellaRepertorium -* Number of recursive dependencies: 172 - -Run `revdepcheck::cloud_details(, "CellaRepertorium")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CellBench - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CellBench -* Number of recursive dependencies: 125 - -Run `revdepcheck::cloud_details(, "CellBench")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# censcyt - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/censcyt -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "censcyt")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# Cepo - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/Cepo -* Number of recursive dependencies: 227 - -Run `revdepcheck::cloud_details(, "Cepo")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ceRNAnetsim - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ceRNAnetsim -* Number of recursive dependencies: 102 - -Run `revdepcheck::cloud_details(, "ceRNAnetsim")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cfdnakit - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cfdnakit -* Number of recursive dependencies: 116 - -Run `revdepcheck::cloud_details(, "cfdnakit")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cfDNAPro - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cfDNAPro -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "cfDNAPro")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# circRNAprofiler - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/circRNAprofiler -* Number of recursive dependencies: 228 - -Run `revdepcheck::cloud_details(, "circRNAprofiler")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CircSeqAlignTk - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CircSeqAlignTk -* Number of recursive dependencies: 149 - -Run `revdepcheck::cloud_details(, "CircSeqAlignTk")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CiteFuse - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CiteFuse -* Number of recursive dependencies: 184 - -Run `revdepcheck::cloud_details(, "CiteFuse")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ClassifyR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ClassifyR -* Number of recursive dependencies: 189 - -Run `revdepcheck::cloud_details(, "ClassifyR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# clusterProfiler - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/clusterProfiler -* Number of recursive dependencies: 175 - -Run `revdepcheck::cloud_details(, "clusterProfiler")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# clustifyr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/clustifyr -* Number of recursive dependencies: 200 - -Run `revdepcheck::cloud_details(, "clustifyr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cogeqc - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cogeqc -* Number of recursive dependencies: 112 - -Run `revdepcheck::cloud_details(, "cogeqc")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# comapr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/comapr -* Number of recursive dependencies: 174 - -Run `revdepcheck::cloud_details(, "comapr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# COMPASS - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/COMPASS -* Number of recursive dependencies: 154 - -Run `revdepcheck::cloud_details(, "COMPASS")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ComPrAn - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ComPrAn -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "ComPrAn")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# concordexR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/concordexR -* Number of recursive dependencies: 182 - -Run `revdepcheck::cloud_details(, "concordexR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CoreGx - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CoreGx -* Number of recursive dependencies: 145 - -Run `revdepcheck::cloud_details(, "CoreGx")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cosmosR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cosmosR -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "cosmosR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# COTAN - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/COTAN -* Number of recursive dependencies: 268 - -Run `revdepcheck::cloud_details(, "COTAN")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# crisprVerse - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/crisprVerse -* Number of recursive dependencies: 193 - -Run `revdepcheck::cloud_details(, "crisprVerse")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cTRAP - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cTRAP -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "cTRAP")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CuratedAtlasQueryR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CuratedAtlasQueryR -* Number of recursive dependencies: 193 - -Run `revdepcheck::cloud_details(, "CuratedAtlasQueryR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# curatedMetagenomicData - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/curatedMetagenomicData -* Number of recursive dependencies: 193 - -Run `revdepcheck::cloud_details(, "curatedMetagenomicData")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# curatedTBData - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/curatedTBData -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "curatedTBData")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CyTOFpower - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CyTOFpower -* Number of recursive dependencies: 231 - -Run `revdepcheck::cloud_details(, "CyTOFpower")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CytoGLMM - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CytoGLMM -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "CytoGLMM")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# cytoKernel - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/cytoKernel -* Number of recursive dependencies: 111 - -Run `revdepcheck::cloud_details(, "cytoKernel")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# CytoPipeline - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/CytoPipeline -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "CytoPipeline")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# dce - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/dce -* Number of recursive dependencies: 324 - -Run `revdepcheck::cloud_details(, "dce")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# dearseq - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/dearseq -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "dearseq")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# decoupleR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/decoupleR -* Number of recursive dependencies: 255 - -Run `revdepcheck::cloud_details(, "decoupleR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# DEGreport - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/DEGreport -* Number of recursive dependencies: 148 - -Run `revdepcheck::cloud_details(, "DEGreport")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# DIAlignR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/DIAlignR -* Number of recursive dependencies: 119 - -Run `revdepcheck::cloud_details(, "DIAlignR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# dStruct - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/dStruct -* Number of recursive dependencies: 126 - -Run `revdepcheck::cloud_details(, "dStruct")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# easier - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/easier -* Number of recursive dependencies: 198 - -Run `revdepcheck::cloud_details(, "easier")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# easyalluvial - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/easyalluvial -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "easyalluvial")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# easyreporting - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/easyreporting -* Number of recursive dependencies: 145 - -Run `revdepcheck::cloud_details(, "easyreporting")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# enrichplot - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/enrichplot -* Number of recursive dependencies: 167 - -Run `revdepcheck::cloud_details(, "enrichplot")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# EpiMix - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/EpiMix -* Number of recursive dependencies: 313 - -Run `revdepcheck::cloud_details(, "EpiMix")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# escape - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/escape -* Number of recursive dependencies: 213 - -Run `revdepcheck::cloud_details(, "escape")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# escheR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/escheR -* Number of recursive dependencies: 249 - -Run `revdepcheck::cloud_details(, "escheR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# evaluator - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/evaluator -* Number of recursive dependencies: 172 - -Run `revdepcheck::cloud_details(, "evaluator")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# extraChIPs - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/extraChIPs -* Number of recursive dependencies: 257 - -Run `revdepcheck::cloud_details(, "extraChIPs")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# factR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/factR -* Number of recursive dependencies: 198 - -Run `revdepcheck::cloud_details(, "factR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# fenr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/fenr -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "fenr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# FindIT2 - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/FindIT2 -* Number of recursive dependencies: 149 - -Run `revdepcheck::cloud_details(, "FindIT2")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# flowGate - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/flowGate -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "flowGate")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# FlowSOM - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/FlowSOM -* Number of recursive dependencies: 154 - -Run `revdepcheck::cloud_details(, "FlowSOM")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# flowTime - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/flowTime -* Number of recursive dependencies: 124 - -Run `revdepcheck::cloud_details(, "flowTime")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# gemma.R - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/gemma.R -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "gemma.R")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# genekitr - -
- -* Version: 1.2.5 -* GitHub: https://github.com/GangLiLab/genekitr -* Source code: https://github.com/cran/genekitr -* Date/Publication: 2023-09-07 08:50:09 UTC -* Number of recursive dependencies: 222 - -Run `revdepcheck::cloud_details(, "genekitr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* this is package ‘genekitr’ version ‘1.2.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘genekitr/DESCRIPTION’ ... OK -... -* this is package ‘genekitr’ version ‘1.2.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# GeneTonic - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GeneTonic -* Number of recursive dependencies: 214 - -Run `revdepcheck::cloud_details(, "GeneTonic")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GenomicDataCommons - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GenomicDataCommons -* Number of recursive dependencies: 160 - -Run `revdepcheck::cloud_details(, "GenomicDataCommons")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GeomxTools - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GeomxTools -* Number of recursive dependencies: 215 - -Run `revdepcheck::cloud_details(, "GeomxTools")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# gg4way - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/gg4way -* Number of recursive dependencies: 132 - -Run `revdepcheck::cloud_details(, "gg4way")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggbio - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggbio -* Number of recursive dependencies: 177 - -Run `revdepcheck::cloud_details(, "ggbio")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggcyto - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggcyto -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "ggcyto")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggmanh - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggmanh -* Number of recursive dependencies: 87 - -Run `revdepcheck::cloud_details(, "ggmanh")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggsc - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggsc -* Number of recursive dependencies: 254 - -Run `revdepcheck::cloud_details(, "ggsc")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggtree - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggtree -* Number of recursive dependencies: 94 - -Run `revdepcheck::cloud_details(, "ggtree")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ggtreeExtra - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ggtreeExtra -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "ggtreeExtra")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# glmGamPoi - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/glmGamPoi -* Number of recursive dependencies: 169 - -Run `revdepcheck::cloud_details(, "glmGamPoi")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GloScope - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GloScope -* Number of recursive dependencies: 113 - -Run `revdepcheck::cloud_details(, "GloScope")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GOSemSim - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GOSemSim -* Number of recursive dependencies: 174 - -Run `revdepcheck::cloud_details(, "GOSemSim")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# grandR - -
- -* Version: 0.2.2 -* GitHub: https://github.com/erhard-lab/grandR -* Source code: https://github.com/cran/grandR -* Date/Publication: 2023-04-20 21:22:30 UTC -* Number of recursive dependencies: 267 - -Run `revdepcheck::cloud_details(, "grandR")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘grandR/DESCRIPTION’ ... OK -... -* checking installed files from ‘inst/doc’ ... OK -* checking files in ‘vignettes’ ... OK -* checking examples ... OK -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘getting-started.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 2 NOTEs - - - - - -``` -# GRaNIE - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GRaNIE -* Number of recursive dependencies: 311 - -Run `revdepcheck::cloud_details(, "GRaNIE")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# granulator - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/granulator -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "granulator")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# graphite - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/graphite -* Number of recursive dependencies: 167 - -Run `revdepcheck::cloud_details(, "graphite")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GSEAmining - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GSEAmining -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "GSEAmining")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# GUIDEseq - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/GUIDEseq -* Number of recursive dependencies: 197 - -Run `revdepcheck::cloud_details(, "GUIDEseq")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# HCAExplorer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/HCAExplorer -* Number of recursive dependencies: 114 - -Run `revdepcheck::cloud_details(, "HCAExplorer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# hermes - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/hermes -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "hermes")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# HiCDCPlus - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/HiCDCPlus -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "HiCDCPlus")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# HIPPO - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/HIPPO -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "HIPPO")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# hoodscanR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/hoodscanR -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "hoodscanR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# hypeR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/hypeR -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "hypeR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# iCNV - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/iCNV -* Number of recursive dependencies: 105 - -Run `revdepcheck::cloud_details(, "iCNV")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ideal - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ideal -* Number of recursive dependencies: 219 - -Run `revdepcheck::cloud_details(, "ideal")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# idpr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/idpr -* Number of recursive dependencies: 90 - -Run `revdepcheck::cloud_details(, "idpr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# immcp - -
- -* Version: 1.0.3 -* GitHub: https://github.com/YuanlongHu/immcp -* Source code: https://github.com/cran/immcp -* Date/Publication: 2022-05-12 05:50:02 UTC -* Number of recursive dependencies: 211 - -Run `revdepcheck::cloud_details(, "immcp")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/immcp/new/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/immcp/old/immcp.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘immcp/DESCRIPTION’ ... OK -... -* this is package ‘immcp’ version ‘1.0.3’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Packages required but not available: 'clusterProfiler', 'DOSE' - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# immunotation - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/immunotation -* Number of recursive dependencies: 103 - -Run `revdepcheck::cloud_details(, "immunotation")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# InterCellar - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/InterCellar -* Number of recursive dependencies: 203 - -Run `revdepcheck::cloud_details(, "InterCellar")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# IntOMICS - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/IntOMICS -* Number of recursive dependencies: 225 - -Run `revdepcheck::cloud_details(, "IntOMICS")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ISAnalytics - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ISAnalytics -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "ISAnalytics")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# isomiRs - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/isomiRs -* Number of recursive dependencies: 166 - -Run `revdepcheck::cloud_details(, "isomiRs")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# isoreader - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/isoreader -* Number of recursive dependencies: 131 - -Run `revdepcheck::cloud_details(, "isoreader")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# jsontools - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/jsontools -* Number of recursive dependencies: 65 - -Run `revdepcheck::cloud_details(, "jsontools")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# katdetectr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/katdetectr -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "katdetectr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ldblock - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ldblock -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "ldblock")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# lipidr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/lipidr -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "lipidr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# loon.ggplot - -
- -* Version: 1.3.3 -* GitHub: https://github.com/great-northern-diver/loon.ggplot -* Source code: https://github.com/cran/loon.ggplot -* Date/Publication: 2022-11-12 22:30:02 UTC -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "loon.ggplot")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK -... -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘loon’ - -Package suggested but not available for checking: ‘zenplots’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# mariner - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/mariner -* Number of recursive dependencies: 160 - -Run `revdepcheck::cloud_details(, "mariner")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# marr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/marr -* Number of recursive dependencies: 100 - -Run `revdepcheck::cloud_details(, "marr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MatrixQCvis - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MatrixQCvis -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "MatrixQCvis")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# memes - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/memes -* Number of recursive dependencies: 162 - -Run `revdepcheck::cloud_details(, "memes")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# metabCombiner - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/metabCombiner -* Number of recursive dependencies: 117 - -Run `revdepcheck::cloud_details(, "metabCombiner")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MetaScope - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MetaScope -* Number of recursive dependencies: 207 - -Run `revdepcheck::cloud_details(, "MetaScope")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MethReg - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MethReg -* Number of recursive dependencies: 228 - -Run `revdepcheck::cloud_details(, "MethReg")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MetNet - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MetNet -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "MetNet")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# mia - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/mia -* Number of recursive dependencies: 223 - -Run `revdepcheck::cloud_details(, "mia")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# miaViz - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/miaViz -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "miaViz")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# microbiomeExplorer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/microbiomeExplorer -* Number of recursive dependencies: 188 - -Run `revdepcheck::cloud_details(, "microbiomeExplorer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# microbiomeMarker - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/microbiomeMarker -* Number of recursive dependencies: 309 - -Run `revdepcheck::cloud_details(, "microbiomeMarker")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MicrobiotaProcess - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MicrobiotaProcess -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "MicrobiotaProcess")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# microSTASIS - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/microSTASIS -* Number of recursive dependencies: 127 - -Run `revdepcheck::cloud_details(, "microSTASIS")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# midasHLA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/midasHLA -* Number of recursive dependencies: 208 - -Run `revdepcheck::cloud_details(, "midasHLA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# mistyR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/mistyR -* Number of recursive dependencies: 156 - -Run `revdepcheck::cloud_details(, "mistyR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MoleculeExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MoleculeExperiment -* Number of recursive dependencies: 133 - -Run `revdepcheck::cloud_details(, "MoleculeExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MOMA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MOMA -* Number of recursive dependencies: 147 - -Run `revdepcheck::cloud_details(, "MOMA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MOSim - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MOSim -* Number of recursive dependencies: 84 - -Run `revdepcheck::cloud_details(, "MOSim")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MQmetrics - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MQmetrics -* Number of recursive dependencies: 118 - -Run `revdepcheck::cloud_details(, "MQmetrics")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MSA2dist - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MSA2dist -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "MSA2dist")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MSnID - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MSnID -* Number of recursive dependencies: 152 - -Run `revdepcheck::cloud_details(, "MSnID")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MSPrep - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MSPrep -* Number of recursive dependencies: 163 - -Run `revdepcheck::cloud_details(, "MSPrep")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# multiGSEA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/multiGSEA -* Number of recursive dependencies: 168 - -Run `revdepcheck::cloud_details(, "multiGSEA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# MultiRNAflow - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/MultiRNAflow -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "MultiRNAflow")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# musicatk - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/musicatk -* Number of recursive dependencies: 284 - -Run `revdepcheck::cloud_details(, "musicatk")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NanoMethViz - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NanoMethViz -* Number of recursive dependencies: 192 - -Run `revdepcheck::cloud_details(, "NanoMethViz")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NanoporeRNASeq - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NanoporeRNASeq -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "NanoporeRNASeq")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# nanotatoR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/nanotatoR -* Number of recursive dependencies: 144 - -Run `revdepcheck::cloud_details(, "nanotatoR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NanoTube - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NanoTube -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "NanoTube")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# nearBynding - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/nearBynding -* Number of recursive dependencies: 131 - -Run `revdepcheck::cloud_details(, "nearBynding")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ngsReports - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ngsReports -* Number of recursive dependencies: 122 - -Run `revdepcheck::cloud_details(, "ngsReports")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# nipalsMCIA - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/nipalsMCIA -* Number of recursive dependencies: 255 - -Run `revdepcheck::cloud_details(, "nipalsMCIA")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# NPARC - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/NPARC -* Number of recursive dependencies: 128 - -Run `revdepcheck::cloud_details(, "NPARC")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# nullranges - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/nullranges -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "nullranges")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# OlinkAnalyze - -
- -* Version: 3.5.1 -* GitHub: NA -* Source code: https://github.com/cran/OlinkAnalyze -* Date/Publication: 2023-08-08 21:00:02 UTC -* Number of recursive dependencies: 230 - -Run `revdepcheck::cloud_details(, "OlinkAnalyze")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK - ‘Vignett.Rmd’ using ‘UTF-8’... OK - ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK - ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK - ‘Vignett.Rmd’ using ‘UTF-8’... OK - ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK - ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# OmnipathR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/OmnipathR -* Number of recursive dependencies: 164 - -Run `revdepcheck::cloud_details(, "OmnipathR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# optimalFlow - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/optimalFlow -* Number of recursive dependencies: 93 - -Run `revdepcheck::cloud_details(, "optimalFlow")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# Organism.dplyr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/Organism.dplyr -* Number of recursive dependencies: 139 - -Run `revdepcheck::cloud_details(, "Organism.dplyr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# orthos - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/orthos -* Number of recursive dependencies: 181 - -Run `revdepcheck::cloud_details(, "orthos")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# PanomiR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PanomiR -* Number of recursive dependencies: 202 - -Run `revdepcheck::cloud_details(, "PanomiR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# PanViz - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PanViz -* Number of recursive dependencies: 81 - -Run `revdepcheck::cloud_details(, "PanViz")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# pareg - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/pareg -* Number of recursive dependencies: 320 - -Run `revdepcheck::cloud_details(, "pareg")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# PAST - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PAST -* Number of recursive dependencies: 99 - -Run `revdepcheck::cloud_details(, "PAST")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# PDATK - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PDATK -* Number of recursive dependencies: 269 - -Run `revdepcheck::cloud_details(, "PDATK")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# PhosR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/PhosR -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "PhosR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# plotgardener - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/plotgardener -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "plotgardener")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# plotGrouper - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/plotGrouper -* Number of recursive dependencies: 137 - -Run `revdepcheck::cloud_details(, "plotGrouper")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# plyinteractions - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/plyinteractions -* Number of recursive dependencies: 188 - -Run `revdepcheck::cloud_details(, "plyinteractions")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# plyranges - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/plyranges -* Number of recursive dependencies: 143 - -Run `revdepcheck::cloud_details(, "plyranges")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# pmdplyr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/pmdplyr -* Number of recursive dependencies: 121 - -Run `revdepcheck::cloud_details(, "pmdplyr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ppcseq - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ppcseq -* Number of recursive dependencies: 116 - -Run `revdepcheck::cloud_details(, "ppcseq")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# proActiv - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/proActiv -* Number of recursive dependencies: 141 - -Run `revdepcheck::cloud_details(, "proActiv")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# profileplyr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/profileplyr -* Number of recursive dependencies: 229 - -Run `revdepcheck::cloud_details(, "profileplyr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ProteoDisco - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ProteoDisco -* Number of recursive dependencies: 190 - -Run `revdepcheck::cloud_details(, "ProteoDisco")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# protGear - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/protGear -* Number of recursive dependencies: 199 - -Run `revdepcheck::cloud_details(, "protGear")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ptairMS - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ptairMS -* Number of recursive dependencies: 194 - -Run `revdepcheck::cloud_details(, "ptairMS")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# qckitfastq - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/qckitfastq -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "qckitfastq")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# qmtools - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/qmtools -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "qmtools")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# qPLEXanalyzer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/qPLEXanalyzer -* Number of recursive dependencies: 150 - -Run `revdepcheck::cloud_details(, "qPLEXanalyzer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# QTLExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/QTLExperiment -* Number of recursive dependencies: 107 - -Run `revdepcheck::cloud_details(, "QTLExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# quantiseqr - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/quantiseqr -* Number of recursive dependencies: 150 - -Run `revdepcheck::cloud_details(, "quantiseqr")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# RAIDS - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RAIDS -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "RAIDS")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# Rcpi - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/Rcpi -* Number of recursive dependencies: 86 - -Run `revdepcheck::cloud_details(, "Rcpi")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ReactomeGraph4R - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ReactomeGraph4R -* Number of recursive dependencies: 89 - -Run `revdepcheck::cloud_details(, "ReactomeGraph4R")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# restfulSE - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/restfulSE -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "restfulSE")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# RiboCrypt - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RiboCrypt -* Number of recursive dependencies: 173 - -Run `revdepcheck::cloud_details(, "RiboCrypt")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# ribor - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ribor -* Number of recursive dependencies: 79 - -Run `revdepcheck::cloud_details(, "ribor")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rifi - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rifi -* Number of recursive dependencies: 195 - -Run `revdepcheck::cloud_details(, "rifi")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# rifiComparative - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/rifiComparative -* Number of recursive dependencies: 183 - -Run `revdepcheck::cloud_details(, "rifiComparative")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# RNAseqCovarImpute - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/RNAseqCovarImpute -* Number of recursive dependencies: 111 - -Run `revdepcheck::cloud_details(, "RNAseqCovarImpute")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# RVA - -
- -* Version: 0.0.5 -* GitHub: https://github.com/THERMOSTATS/RVA -* Source code: https://github.com/cran/RVA -* Date/Publication: 2021-11-01 21:40:02 UTC -* Number of recursive dependencies: 227 - -Run `revdepcheck::cloud_details(, "RVA")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/RVA/new/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/RVA/old/RVA.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘RVA/DESCRIPTION’ ... OK -... -* this is package ‘RVA’ version ‘0.0.5’ -* package encoding: UTF-8 -* checking package namespace information ... OK -* checking package dependencies ... ERROR -Package required but not available: ‘clusterProfiler’ - -See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ -manual. -* DONE -Status: 1 ERROR - - - - - -``` -# scater - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scater -* Number of recursive dependencies: 198 - -Run `revdepcheck::cloud_details(, "scater")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# sccomp - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/sccomp -* Number of recursive dependencies: 196 - -Run `revdepcheck::cloud_details(, "sccomp")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scFeatureFilter - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scFeatureFilter -* Number of recursive dependencies: 155 - -Run `revdepcheck::cloud_details(, "scFeatureFilter")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scider - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scider -* Number of recursive dependencies: 153 - -Run `revdepcheck::cloud_details(, "scider")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scifer - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scifer -* Number of recursive dependencies: 123 - -Run `revdepcheck::cloud_details(, "scifer")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scPipe - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scPipe -* Number of recursive dependencies: 256 - -Run `revdepcheck::cloud_details(, "scPipe")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SCpubr - -
- -* Version: 2.0.2 -* GitHub: https://github.com/enblacar/SCpubr -* Source code: https://github.com/cran/SCpubr -* Date/Publication: 2023-10-11 09:50:02 UTC -* Number of recursive dependencies: 315 - -Run `revdepcheck::cloud_details(, "SCpubr")` for more info - -
- -## Error before installation - -### Devel - -``` -* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -### CRAN - -``` -* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’ -* using R version 4.3.1 (2023-06-16) -* using platform: x86_64-pc-linux-gnu (64-bit) -* R was compiled by - gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 - GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 -* running under: Ubuntu 20.04.6 LTS -* using session charset: UTF-8 -* using option ‘--no-manual’ -* checking for file ‘SCpubr/DESCRIPTION’ ... OK -... -* checking for unstated dependencies in ‘tests’ ... OK -* checking tests ... OK - Running ‘testthat.R’ -* checking for unstated dependencies in vignettes ... OK -* checking package vignettes in ‘inst/doc’ ... OK -* checking running R code from vignettes ... NONE - ‘reference_manual.Rmd’ using ‘UTF-8’... OK -* checking re-building of vignette outputs ... OK -* DONE -Status: 1 NOTE - - - - - -``` -# ScreenR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/ScreenR -* Number of recursive dependencies: 91 - -Run `revdepcheck::cloud_details(, "ScreenR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# scRepertoire - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/scRepertoire -* Number of recursive dependencies: 210 - -Run `revdepcheck::cloud_details(, "scRepertoire")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# seqCAT - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/seqCAT -* Number of recursive dependencies: 135 - -Run `revdepcheck::cloud_details(, "seqCAT")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# shinyepico - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/shinyepico -* Number of recursive dependencies: 252 - -Run `revdepcheck::cloud_details(, "shinyepico")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# single - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/single -* Number of recursive dependencies: 82 - -Run `revdepcheck::cloud_details(, "single")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# singleCellTK - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/singleCellTK -* Number of recursive dependencies: 392 - -Run `revdepcheck::cloud_details(, "singleCellTK")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# snapcount - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/snapcount -* Number of recursive dependencies: 134 - -Run `revdepcheck::cloud_details(, "snapcount")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SpatialCPie - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SpatialCPie -* Number of recursive dependencies: 129 - -Run `revdepcheck::cloud_details(, "SpatialCPie")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SpatialFeatureExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SpatialFeatureExperiment -* Number of recursive dependencies: 171 - -Run `revdepcheck::cloud_details(, "SpatialFeatureExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SPIAT - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SPIAT -* Number of recursive dependencies: 185 - -Run `revdepcheck::cloud_details(, "SPIAT")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# spicyR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/spicyR -* Number of recursive dependencies: 246 - -Run `revdepcheck::cloud_details(, "spicyR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# splatter - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/splatter -* Number of recursive dependencies: 255 - -Run `revdepcheck::cloud_details(, "splatter")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SpotClean - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SpotClean -* Number of recursive dependencies: 199 - -Run `revdepcheck::cloud_details(, "SpotClean")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# sSNAPPY - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/sSNAPPY -* Number of recursive dependencies: 180 - -Run `revdepcheck::cloud_details(, "sSNAPPY")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# standR - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/standR -* Number of recursive dependencies: 232 - -Run `revdepcheck::cloud_details(, "standR")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# StructuralVariantAnnotation - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/StructuralVariantAnnotation -* Number of recursive dependencies: 221 - -Run `revdepcheck::cloud_details(, "StructuralVariantAnnotation")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# SummarizedBenchmark - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/SummarizedBenchmark -* Number of recursive dependencies: 222 - -Run `revdepcheck::cloud_details(, "SummarizedBenchmark")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# supersigs - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/supersigs -* Number of recursive dependencies: 176 - -Run `revdepcheck::cloud_details(, "supersigs")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# svaNUMT - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/svaNUMT -* Number of recursive dependencies: 179 - -Run `revdepcheck::cloud_details(, "svaNUMT")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# svaRetro - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/svaRetro -* Number of recursive dependencies: 179 - -Run `revdepcheck::cloud_details(, "svaRetro")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# syntenet - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/syntenet -* Number of recursive dependencies: 145 - -Run `revdepcheck::cloud_details(, "syntenet")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# systemPipeShiny - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/systemPipeShiny -* Number of recursive dependencies: 200 - -Run `revdepcheck::cloud_details(, "systemPipeShiny")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# tadar - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/tadar -* Number of recursive dependencies: 193 - -Run `revdepcheck::cloud_details(, "tadar")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# TBSignatureProfiler - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/TBSignatureProfiler -* Number of recursive dependencies: 227 - -Run `revdepcheck::cloud_details(, "TBSignatureProfiler")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# tidybulk - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/tidybulk -* Number of recursive dependencies: 350 - -Run `revdepcheck::cloud_details(, "tidybulk")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# tidySingleCellExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/tidySingleCellExperiment -* Number of recursive dependencies: 213 - -Run `revdepcheck::cloud_details(, "tidySingleCellExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# tidySummarizedExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/tidySummarizedExperiment -* Number of recursive dependencies: 110 - -Run `revdepcheck::cloud_details(, "tidySummarizedExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# treeio - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/treeio -* Number of recursive dependencies: 106 - -Run `revdepcheck::cloud_details(, "treeio")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# TreeSummarizedExperiment - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/TreeSummarizedExperiment -* Number of recursive dependencies: 116 - -Run `revdepcheck::cloud_details(, "TreeSummarizedExperiment")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# triptych - -
- -* Version: 0.1.2 -* GitHub: https://github.com/aijordan/triptych -* Source code: https://github.com/cran/triptych -* Date/Publication: 2023-10-03 16:30:02 UTC -* Number of recursive dependencies: 66 +* Version: 0.9.4 +* GitHub: https://github.com/luckinet/arealDB +* Source code: https://github.com/cran/arealDB +* Date/Publication: 2025-01-20 13:40:05 UTC +* Number of recursive dependencies: 110 -Run `revdepcheck::cloud_details(, "triptych")` for more info +Run `revdepcheck::cloud_details(, "arealDB")` for more info
## In both -* checking whether package ‘triptych’ can be installed ... ERROR +* checking whether package ‘arealDB’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/triptych/new/triptych.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/00install.out’ for details. ``` ## Installation @@ -8335,304 +25,234 @@ Run `revdepcheck::cloud_details(, "triptych")` for more info ### Devel ``` -* installing *source* package ‘triptych’ ... -** package ‘triptych’ successfully unpacked and MD5 sums checked +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/triptych/new/triptych.Rcheck/triptych’ +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/new/arealDB.Rcheck/arealDB’ ``` ### CRAN ``` -* installing *source* package ‘triptych’ ... -** package ‘triptych’ successfully unpacked and MD5 sums checked +* installing *source* package ‘arealDB’ ... +** package ‘arealDB’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -Error: C++20 standard requested but CXX20 is not defined -* removing ‘/tmp/workdir/triptych/old/triptych.Rcheck/triptych’ - - -``` -# tuberculosis - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/tuberculosis -* Number of recursive dependencies: 187 - -Run `revdepcheck::cloud_details(, "tuberculosis")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# UMI4Cats - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/UMI4Cats -* Number of recursive dependencies: 178 - -Run `revdepcheck::cloud_details(, "UMI4Cats")` for more info - -
- -## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘arealDB’ +* removing ‘/tmp/workdir/arealDB/old/arealDB.Rcheck/arealDB’ ``` -# universalmotif +# bayesdfa
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/universalmotif -* Number of recursive dependencies: 206 +* Version: 1.3.4 +* GitHub: https://github.com/fate-ewi/bayesdfa +* Source code: https://github.com/cran/bayesdfa +* Date/Publication: 2025-03-22 20:30:21 UTC +* Number of recursive dependencies: 87 -Run `revdepcheck::cloud_details(, "universalmotif")` for more info +Run `revdepcheck::cloud_details(, "bayesdfa")` for more info
-## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# variancePartition - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/variancePartition -* Number of recursive dependencies: 209 - -Run `revdepcheck::cloud_details(, "variancePartition")` for more info +## In both -
+* checking whether package ‘bayesdfa’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` - - - - +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/new/bayesdfa.Rcheck/bayesdfa’ ``` ### CRAN ``` - - - - +* installing *source* package ‘bayesdfa’ ... +** package ‘bayesdfa’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘bayesdfa’ +* removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ ``` -# Voyager +# fio
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/Voyager -* Number of recursive dependencies: 249 +* Version: 0.1.5 +* GitHub: https://github.com/albersonmiranda/fio +* Source code: https://github.com/cran/fio +* Date/Publication: 2025-04-02 21:50:09 UTC +* Number of recursive dependencies: 90 -Run `revdepcheck::cloud_details(, "Voyager")` for more info +Run `revdepcheck::cloud_details(, "fio")` for more info
-## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# weitrix - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/weitrix -* Number of recursive dependencies: 197 - -Run `revdepcheck::cloud_details(, "weitrix")` for more info +## In both -
+* checking whether package ‘fio’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/fio/new/fio.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` - - - - +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked +** using staged installation +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +... + Compiling pulp v0.21.4 + Compiling crossbeam-deque v0.8.6 +error: unsupported output in build script of `pulp v0.21.4`: `cargo::rustc-check-cfg=cfg(libpulp_const)` +Found a `cargo::key=value` build directive which is reserved for future use. +Either change the directive to `cargo:key=value` syntax (note the single `:`) or upgrade your version of Rust. +See https://doc.rust-lang.org/cargo/reference/build-scripts.html#outputs-of-the-build-script for more information about build script outputs. +warning: build failed, waiting for other jobs to finish... +make: *** [Makevars:27: rust/target/release/libfio.a] Error 101 +ERROR: compilation failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/new/fio.Rcheck/fio’ ``` ### CRAN ``` - - - - +* installing *source* package ‘fio’ ... +** package ‘fio’ successfully unpacked and MD5 sums checked +** using staged installation +Using cargo 1.75.0 +Using rustc 1.75.0 (82e1608df 2023-12-21) (built from a source tarball) +Building for CRAN. +Writing `src/Makevars`. +`tools/config.R` has finished. +** libs +using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +... + Compiling crossbeam-deque v0.8.6 + Compiling thiserror-impl v2.0.12 +error: unsupported output in build script of `pulp v0.21.4`: `cargo::rustc-check-cfg=cfg(libpulp_const)` +Found a `cargo::key=value` build directive which is reserved for future use. +Either change the directive to `cargo:key=value` syntax (note the single `:`) or upgrade your version of Rust. +See https://doc.rust-lang.org/cargo/reference/build-scripts.html#outputs-of-the-build-script for more information about build script outputs. +warning: build failed, waiting for other jobs to finish... +make: *** [Makevars:27: rust/target/release/libfio.a] Error 101 +ERROR: compilation failed for package ‘fio’ +* removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’ ``` -# wpm +# ontologics
-* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/wpm -* Number of recursive dependencies: 144 +* Version: 0.7.4 +* GitHub: https://github.com/luckinet/ontologics +* Source code: https://github.com/cran/ontologics +* Date/Publication: 2025-01-17 16:50:02 UTC +* Number of recursive dependencies: 80 -Run `revdepcheck::cloud_details(, "wpm")` for more info +Run `revdepcheck::cloud_details(, "ontologics")` for more info
-## Error before installation - -### Devel - -``` - - - - - - -``` -### CRAN - -``` - - - - - - -``` -# wppi - -
- -* Version: NA -* GitHub: NA -* Source code: https://github.com/cran/wppi -* Number of recursive dependencies: 88 - -Run `revdepcheck::cloud_details(, "wppi")` for more info +## In both -
+* checking whether package ‘ontologics’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/00install.out’ for details. + ``` -## Error before installation +## Installation ### Devel ``` - - - - +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/new/ontologics.Rcheck/ontologics’ ``` ### CRAN ``` - - - - +* installing *source* package ‘ontologics’ ... +** package ‘ontologics’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘ontologics’ +* removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’ ``` diff --git a/revdep/problems.md b/revdep/problems.md index a8fb32e7b..9a2073633 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,66 +1 @@ -# eiCompare - -
- -* Version: 3.0.4 -* GitHub: https://github.com/RPVote/eiCompare -* Source code: https://github.com/cran/eiCompare -* Date/Publication: 2023-08-31 13:30:02 UTC -* Number of recursive dependencies: 147 - -Run `revdepcheck::cloud_details(, "eiCompare")` for more info - -
- -## Newly broken - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Complete output: - > library(testthat) - > library(eiCompare) - Loading required package: eiPack - Loading required package: ei - Loading required package: wru - > - > test_check("eiCompare") - ... - } else { - stop() - }`: argument is of length zero - Backtrace: - ▆ - 1. └─eiCompare::wru_predict_race_wrapper(...) at test_wru_predict_race_wrapper.R:19:3 - - [ FAIL 1 | WARN 0 | SKIP 0 | PASS 75 ] - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... ERROR - ``` - Error(s) in re-building vignettes: - --- re-building ‘bisg.Rmd’ using rmarkdown - - Quitting from lines 164-175 [unnamed-chunk-16] (bisg.Rmd) - Error: processing vignette 'bisg.Rmd' failed with diagnostics: - no applicable method for 'tbl_vars' applied to an object of class "NULL" - --- failed re-building ‘bisg.Rmd’ - - --- re-building ‘ei.Rmd’ using rmarkdown - --- finished re-building ‘ei.Rmd’ - ... - Quitting from lines 235-263 [performance_analysis] (performance_analysis.Rmd) - Error: processing vignette 'performance_analysis.Rmd' failed with diagnostics: - No columns selected for aggregation. - --- failed re-building ‘performance_analysis.Rmd’ - - SUMMARY: processing the following files failed: - ‘bisg.Rmd’ ‘performance_analysis.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - +*Wow, no problems at all. :)* \ No newline at end of file From 83746c190a201b65336596fcb1323894379780fd Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Fri, 4 Apr 2025 15:48:10 +0200 Subject: [PATCH 4/4] Update tidyverse revdeps --- revdep/README.md | 38 +- revdep/cran.md | 42 ++- revdep/failures.md | 896 ++++++++++++++++++++++++++++++++++++++++++++- revdep/problems.md | 140 ++++++- src/version.c | 2 +- 5 files changed, 1099 insertions(+), 19 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index ec2cf8777..315c1ab89 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,11 +1,33 @@ # Revdeps -## Failed to check (4) - -|package |version |error |warning |note | -|:----------|:-------|:-----|:-------|:----| -|arealDB |0.9.4 |1 | | | -|bayesdfa |1.3.4 |1 | | | -|fio |0.1.5 |1 | | | -|ontologics |0.7.4 |1 | | | +## Failed to check (17) + +|package |version |error |warning |note | +|:----------------|:-------|:-----|:-------|:----| +|arealDB |0.9.4 |1 | | | +|bayesdfa |1.3.4 |1 | | | +|ctsem |3.10.2 |1 | | | +|EcoEnsemble |1.1.2 |1 | | | +|FAIRmaterials |0.4.2.1 |1 | | | +|fio |0.1.5 |1 | | | +|loon.shiny |? | | | | +|metabolic |? | | | | +|metajam |0.3.1 |1 | | | +|multinma |0.8.0 |1 | | | +|nesRdata |0.3.1 |1 | | | +|ontologics |0.7.4 |1 | | | +|rdflib |0.2.9 |1 | | | +|rmsb |1.1-1 |1 | | | +|rstanarm |2.32.1 |1 | | | +|streamDAG |? | | | | +|TriDimRegression |1.0.2 |1 | | | + +## New problems (4) + +|package |version |error |warning |note | +|:-----------|:-------|:------|:-------|:--------| +|[codebookr](problems.md#codebookr)|0.1.8 |__+1__ | | | +|[Haplin](problems.md#haplin)|7.3.2 | | |__+1__ | +|[keras](problems.md#keras)|2.15.0 | | |__+1__ | +|[pivottabler](problems.md#pivottabler)|1.5.5 | | |1 __+1__ | diff --git a/revdep/cran.md b/revdep/cran.md index 40bff431c..e2dbcf03a 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,15 +1,43 @@ ## revdepcheck results -We checked 2864 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 8473 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 0 new problems - * We failed to check 4 packages + * We saw 4 new problems + * We failed to check 17 packages Issues with CRAN packages are summarised below. +### New problems +(This reports the first line of each new failure) + +* codebookr + checking tests ... ERROR + +* Haplin + checking installed package size ... NOTE + +* keras + checking installed package size ... NOTE + +* pivottabler + checking installed package size ... NOTE + ### Failed to check -* arealDB (NA) -* bayesdfa (NA) -* fio (NA) -* ontologics (NA) +* arealDB (NA) +* bayesdfa (NA) +* ctsem (NA) +* EcoEnsemble (NA) +* FAIRmaterials (NA) +* fio (NA) +* loon.shiny (NA) +* metabolic (NA) +* metajam (NA) +* multinma (NA) +* nesRdata (NA) +* ontologics (NA) +* rdflib (NA) +* rmsb (NA) +* rstanarm (NA) +* streamDAG (NA) +* TriDimRegression (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 4c44eeae0..e5e10eb9c 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -115,6 +115,224 @@ ERROR: configuration failed for package ‘bayesdfa’ * removing ‘/tmp/workdir/bayesdfa/old/bayesdfa.Rcheck/bayesdfa’ +``` +# ctsem + +
+ +* Version: 3.10.2 +* GitHub: https://github.com/cdriveraus/ctsem +* Source code: https://github.com/cran/ctsem +* Date/Publication: 2025-01-13 11:00:08 UTC +* Number of recursive dependencies: 160 + +Run `revdepcheck::cloud_details(, "ctsem")` for more info + +
+ +## In both + +* checking whether package ‘ctsem’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’ + + +``` +### CRAN + +``` +* installing *source* package ‘ctsem’ ... +** package ‘ctsem’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ctsm_namespace::model_ctsm; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ctsm.o] Error 1 +ERROR: compilation failed for package ‘ctsem’ +* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’ + + +``` +# EcoEnsemble + +
+ +* Version: 1.1.2 +* GitHub: https://github.com/CefasRepRes/EcoEnsemble +* Source code: https://github.com/cran/EcoEnsemble +* Date/Publication: 2025-03-18 18:20:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "EcoEnsemble")` for more info + +
+ +## In both + +* checking whether package ‘EcoEnsemble’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/new/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +### CRAN + +``` +* installing *source* package ‘EcoEnsemble’ ... +** package ‘EcoEnsemble’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c KF_back.cpp -o KF_back.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_ensemble_model_hierarchical_namespace::model_ensemble_model_hierarchical; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_ensemble_model_hierarchical.o] Error 1 +ERROR: compilation failed for package ‘EcoEnsemble’ +* removing ‘/tmp/workdir/EcoEnsemble/old/EcoEnsemble.Rcheck/EcoEnsemble’ + + +``` +# FAIRmaterials + +
+ +* Version: 0.4.2.1 +* GitHub: NA +* Source code: https://github.com/cran/FAIRmaterials +* Date/Publication: 2024-06-27 15:40:02 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "FAIRmaterials")` for more info + +
+ +## In both + +* checking whether package ‘FAIRmaterials’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘FAIRmaterials’ ... +** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘FAIRmaterials’ +* removing ‘/tmp/workdir/FAIRmaterials/new/FAIRmaterials.Rcheck/FAIRmaterials’ + + +``` +### CRAN + +``` +* installing *source* package ‘FAIRmaterials’ ... +** package ‘FAIRmaterials’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘FAIRmaterials’ +* removing ‘/tmp/workdir/FAIRmaterials/old/FAIRmaterials.Rcheck/FAIRmaterials’ + + ``` # fio @@ -154,7 +372,7 @@ Writing `src/Makevars`. ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ ... - Compiling pulp v0.21.4 + Compiling thiserror-impl v2.0.12 Compiling crossbeam-deque v0.8.6 error: unsupported output in build script of `pulp v0.21.4`: `cargo::rustc-check-cfg=cfg(libpulp_const)` Found a `cargo::key=value` build directive which is reserved for future use. @@ -181,8 +399,8 @@ Writing `src/Makevars`. ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ ... + Compiling pulp v0.21.4 Compiling crossbeam-deque v0.8.6 - Compiling thiserror-impl v2.0.12 error: unsupported output in build script of `pulp v0.21.4`: `cargo::rustc-check-cfg=cfg(libpulp_const)` Found a `cargo::key=value` build directive which is reserved for future use. Either change the directive to `cargo:key=value` syntax (note the single `:`) or upgrade your version of Rust. @@ -193,6 +411,364 @@ ERROR: compilation failed for package ‘fio’ * removing ‘/tmp/workdir/fio/old/fio.Rcheck/fio’ +``` +# loon.shiny + +
+ +* Version: 1.0.3 +* GitHub: NA +* Source code: https://github.com/cran/loon.shiny +* Date/Publication: 2022-10-08 15:30:02 UTC +* Number of recursive dependencies: 136 + +Run `revdepcheck::cloud_details(, "loon.shiny")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/loon.shiny/new/loon.shiny.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.shiny/DESCRIPTION’ ... OK +... +* this is package ‘loon.shiny’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/loon.shiny/old/loon.shiny.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.shiny/DESCRIPTION’ ... OK +... +* this is package ‘loon.shiny’ version ‘1.0.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'loon', 'loon.ggplot' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# metabolic + +
+ +* Version: 0.1.2 +* GitHub: https://github.com/fmmattioni/metabolic +* Source code: https://github.com/cran/metabolic +* Date/Publication: 2023-10-10 07:40:02 UTC +* Number of recursive dependencies: 137 + +Run `revdepcheck::cloud_details(, "metabolic")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/metabolic/new/metabolic.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘metabolic/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... NOTE + Note: found 37 marked UTF-8 strings +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ +* DONE +Status: 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/metabolic/old/metabolic.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘metabolic/DESCRIPTION’ ... OK +... +* checking data for non-ASCII characters ... NOTE + Note: found 37 marked UTF-8 strings +* checking LazyData ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘spelling.R’ +* DONE +Status: 2 NOTEs + + + + + +``` +# metajam + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/NCEAS/metajam +* Source code: https://github.com/cran/metajam +* Date/Publication: 2024-08-16 17:50:02 UTC +* Number of recursive dependencies: 90 + +Run `revdepcheck::cloud_details(, "metajam")` for more info + +
+ +## In both + +* checking whether package ‘metajam’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/metajam/new/metajam.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/new/metajam.Rcheck/metajam’ + + +``` +### CRAN + +``` +* installing *source* package ‘metajam’ ... +** package ‘metajam’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘metajam’ +* removing ‘/tmp/workdir/metajam/old/metajam.Rcheck/metajam’ + + +``` +# multinma + +
+ +* Version: 0.8.0 +* GitHub: https://github.com/dmphillippo/multinma +* Source code: https://github.com/cran/multinma +* Date/Publication: 2025-03-25 22:50:16 UTC +* Number of recursive dependencies: 150 + +Run `revdepcheck::cloud_details(, "multinma")` for more info + +
+ +## In both + +* checking whether package ‘multinma’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/multinma/new/multinma.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/new/multinma.Rcheck/multinma’ + + +``` +### CRAN + +``` +* installing *source* package ‘multinma’ ... +** package ‘multinma’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 + + +g++ -std=gnu++17 -I"/opt/R/4.4.0/lib/R/include" -DNDEBUG -I"../inst/include" -I"/usr/local/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/usr/local/lib/R/site-library/BH/include' -I'/usr/local/lib/R/site-library/Rcpp/include' -I'/usr/local/lib/R/site-library/RcppEigen/include' -I'/usr/local/lib/R/site-library/RcppParallel/include' -I'/usr/local/lib/R/site-library/rstan/include' -I'/usr/local/lib/R/site-library/StanHeaders/include' -I/usr/local/include -I'/usr/local/lib/R/site-library/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +In file included from /usr/local/lib/R/site-library/RcppEigen/include/Eigen/Core:205, +... +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:22:0: required from ‘double stan::mcmc::dense_e_metric::T(stan::mcmc::dense_e_point&) [with Model = model_survival_param_namespace::model_survival_param; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]’ +/usr/local/lib/R/site-library/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stanExports_survival_param.o] Error 1 +ERROR: compilation failed for package ‘multinma’ +* removing ‘/tmp/workdir/multinma/old/multinma.Rcheck/multinma’ + + +``` +# nesRdata + +
+ +* Version: 0.3.1 +* GitHub: https://github.com/jsta/nesRdata +* Source code: https://github.com/cran/nesRdata +* Date/Publication: 2020-04-30 17:20:02 UTC +* Number of recursive dependencies: 66 + +Run `revdepcheck::cloud_details(, "nesRdata")` for more info + +
+ +## In both + +* checking whether package ‘nesRdata’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’ + + +``` +### CRAN + +``` +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** data +*** moving datasets to lazyload DB +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’ + + ``` # ontologics @@ -255,4 +831,320 @@ ERROR: lazy loading failed for package ‘ontologics’ * removing ‘/tmp/workdir/ontologics/old/ontologics.Rcheck/ontologics’ +``` +# rdflib + +
+ +* Version: 0.2.9 +* GitHub: https://github.com/ropensci/rdflib +* Source code: https://github.com/cran/rdflib +* Date/Publication: 2024-08-17 06:00:05 UTC +* Number of recursive dependencies: 93 + +Run `revdepcheck::cloud_details(, "rdflib")` for more info + +
+ +## In both + +* checking whether package ‘rdflib’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’ + + +``` +### CRAN + +``` +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked +** using staged installation +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/usr/local/lib/R/site-library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’ + + +``` +# rmsb + +
+ +* Version: 1.1-1 +* GitHub: NA +* Source code: https://github.com/cran/rmsb +* Date/Publication: 2024-07-08 11:10:03 UTC +* Number of recursive dependencies: 138 + +Run `revdepcheck::cloud_details(, "rmsb")` for more info + +
+ +## In both + +* checking whether package ‘rmsb’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/new/rmsb.Rcheck/rmsb’ + + +``` +### CRAN + +``` +* installing *source* package ‘rmsb’ ... +** package ‘rmsb’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘rmsb’ +* removing ‘/tmp/workdir/rmsb/old/rmsb.Rcheck/rmsb’ + + +``` +# rstanarm + +
+ +* Version: 2.32.1 +* GitHub: https://github.com/stan-dev/rstanarm +* Source code: https://github.com/cran/rstanarm +* Date/Publication: 2024-01-18 23:00:03 UTC +* Number of recursive dependencies: 141 + +Run `revdepcheck::cloud_details(, "rstanarm")` for more info + +
+ +## In both + +* checking whether package ‘rstanarm’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/new/rstanarm.Rcheck/rstanarm’ + + +``` +### CRAN + +``` +* installing *source* package ‘rstanarm’ ... +** package ‘rstanarm’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ +using C++17 +"/opt/R/4.4.0/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan +Wrote C++ file "stan_files/bernoulli.cc" + + +... +/usr/local/lib/R/site-library/StanHeaders/include/stan/math/rev/fun/quad_form.hpp:88:0: required from here +/usr/local/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] + 654 | return internal::first_aligned::alignment),Derived>(m); + | ^~~~~~~~~ +g++: fatal error: Killed signal terminated program cc1plus +compilation terminated. +make: *** [/opt/R/4.4.0/lib/R/etc/Makeconf:202: stan_files/continuous.o] Error 1 +rm stan_files/bernoulli.cc stan_files/binomial.cc stan_files/continuous.cc +ERROR: compilation failed for package ‘rstanarm’ +* removing ‘/tmp/workdir/rstanarm/old/rstanarm.Rcheck/rstanarm’ + + +``` +# streamDAG + +
+ +* Version: 1.5-9 +* GitHub: NA +* Source code: https://github.com/cran/streamDAG +* Date/Publication: 2025-01-14 21:50:02 UTC +* Number of recursive dependencies: 139 + +Run `revdepcheck::cloud_details(, "streamDAG")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/streamDAG/new/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/streamDAG/old/streamDAG.Rcheck’ +* using R version 4.4.0 (2024-04-24) +* using platform: x86_64-pc-linux-gnu +* R was compiled by + gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 + GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 +* running under: Ubuntu 24.04.1 LTS +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘streamDAG/DESCRIPTION’ ... OK +* this is package ‘streamDAG’ version ‘1.5-9’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘asbio’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# TriDimRegression + +
+ +* Version: 1.0.2 +* GitHub: https://github.com/alexander-pastukhov/tridim-regression +* Source code: https://github.com/cran/TriDimRegression +* Date/Publication: 2023-09-13 14:10:03 UTC +* Number of recursive dependencies: 98 + +Run `revdepcheck::cloud_details(, "TriDimRegression")` for more info + +
+ +## In both + +* checking whether package ‘TriDimRegression’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/new/TriDimRegression.Rcheck/TriDimRegression’ + + +``` +### CRAN + +``` +* installing *source* package ‘TriDimRegression’ ... +** package ‘TriDimRegression’ successfully unpacked and MD5 sums checked +** using staged installation +Error in loadNamespace(x) : there is no package called ‘rstantools’ +Calls: loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘TriDimRegression’ +* removing ‘/tmp/workdir/TriDimRegression/old/TriDimRegression.Rcheck/TriDimRegression’ + + ``` diff --git a/revdep/problems.md b/revdep/problems.md index 9a2073633..9378778e9 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1 +1,139 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# codebookr + +
+ +* Version: 0.1.8 +* GitHub: https://github.com/brad-cannell/codebookr +* Source code: https://github.com/cran/codebookr +* Date/Publication: 2024-02-19 08:20:08 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "codebookr")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Complete output: + > library(testthat) + > library(codebookr) + > + > test_check("codebookr") + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 103 ] + + ══ Failed tests ════════════════════════════════════════════════════════════════ + ── Failure ('test-cb_add_summary_stats.R:338:3'): The num_to_cat argument is working as expected ── + class(cb_add_summary_stats(study, "three_cats", num_to_cat = 2)) not equal to c("summary_numeric", "tbl_df", "tbl", "data.frame"). + 1/4 mismatches + x[1]: "summary_few_cats" + y[1]: "summary_numeric" + + [ FAIL 1 | WARN 0 | SKIP 0 | PASS 103 ] + Error: Test failures + Execution halted + ``` + +# Haplin + +
+ +* Version: 7.3.2 +* GitHub: NA +* Source code: https://github.com/cran/Haplin +* Date/Publication: 2024-08-20 14:30:14 UTC +* Number of recursive dependencies: 65 + +Run `revdepcheck::cloud_details(, "Haplin")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + extdata 3.0Mb + ``` + +# keras + +
+ +* Version: 2.15.0 +* GitHub: https://github.com/rstudio/keras +* Source code: https://github.com/cran/keras +* Date/Publication: 2024-04-20 05:42:42 UTC +* Number of recursive dependencies: 79 + +Run `revdepcheck::cloud_details(, "keras")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + R 1.5Mb + doc 2.0Mb + help 1.5Mb + ``` + +# pivottabler + +
+ +* Version: 1.5.5 +* GitHub: https://github.com/cbailiss/pivottabler +* Source code: https://github.com/cran/pivottabler +* Date/Publication: 2023-10-01 16:20:02 UTC +* Number of recursive dependencies: 83 + +Run `revdepcheck::cloud_details(, "pivottabler")` for more info + +
+ +## Newly broken + +* checking installed package size ... NOTE + ``` + installed size is 7.2Mb + sub-directories of 1Mb or more: + R 2.0Mb + data 4.0Mb + ``` + +## In both + +* checking Rd files ... NOTE + ``` + checkRd: (-1) PivotDataGroup.Rd:78: Lost braces; missing escapes or markup? + 78 | for the data group caption, default "{values}".} + | ^ + checkRd: (-1) PivotDataGroup.Rd:244: Lost braces; missing escapes or markup? + 244 | for the data group caption, default "{values}".} + | ^ + checkRd: (-1) PivotDataGroup.Rd:581: Lost braces; missing escapes or markup? + 581 | for the data group caption, default "{values}".} + | ^ + checkRd: (-1) PivotDataGroup.Rd:764: Lost braces; missing escapes or markup? + ... + | ^ + checkRd: (-1) PivotTable.Rd:1060: Lost braces; missing escapes or markup? + 1060 | for the data group caption, default "{values}".} + | ^ + checkRd: (-1) PivotTable.Rd:1189: Lost braces; missing escapes or markup? + 1189 | default "{value}".} + | ^ + checkRd: (-1) PivotTable.Rd:1808: Lost braces; missing escapes or markup? + 1808 | `function(v, cell) { if(isTRUE(v>0.8)) return("green") }`.\cr + | ^ + ``` + diff --git a/src/version.c b/src/version.c index 40f59607c..503b08a44 100644 --- a/src/version.c +++ b/src/version.c @@ -1,7 +1,7 @@ #define R_NO_REMAP #include -const char* rlang_version = "1.1.4.9000"; +const char* rlang_version = "1.1.5.9000"; /** * This file records the expected package version in the shared