.travis.yml

sudo: required

language: python
python: 2.7

services:
  - docker

env:
  matrix:
    - TOX_ENV=py27
    - COMPOSE=True
  global:
    - secure: "PgEA6vDYZWAIZ3KyUTeA9SNSNR+eJU3kBkoEIsTnmnkyta0Z0VbIv98B9ApYeiC0VHpVzY1gblimmkXSY5+4oD9tUxpA630cUhE9iLNuo5o3MpRFun8nf8H6Jz2Y/PaPw3VPLKsH49LJYgJXeqgzoV7FHrpUP9Q3/5dycWybV2I="

git:
  submodules: false

before_install:
  - export GALAXY_HOME=/home/galaxy
  - export GALAXY_USER=admin@galaxy.org
  - export GALAXY_USER_EMAIL=admin@galaxy.org
  - export GALAXY_USER_PASSWD=admin
  - export BIOBLEND_GALAXY_API_KEY=admin
  - export BIOBLEND_GALAXY_URL=http://localhost:8080

  - sudo apt-get update -qq
  - sudo apt-get install docker-engine --no-install-recommends -y -o Dpkg::Options::="--force-confmiss" -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confnew"
  - sudo apt-get install sshpass --no-install-recommends -y

  - docker --version
  - docker info

  - git submodule update --init --recursive
  - docker build -t quay.io/bgruening/galaxy galaxy/
  - sudo chown 1450 /tmp && sudo chmod a=rwx /tmp

  - |
    if [ "${COMPOSE}" ]
    then
        pip install docker-compose
        cd compose
        docker build -t quay.io/galaxy/proftpd ./proftpd
        docker tag quay.io/galaxy/proftpd quay.io/galaxy/proftpd:compose
        docker build -t quay.io/galaxy/postgres ./postgres-galaxy
        docker tag quay.io/galaxy/postgres quay.io/galaxy/postgres:compose
        docker tag quay.io/bgruening/galaxy quay.io/bgruening/galaxy:compose
        docker-compose --project-name galaxy_compose up -d
        sleep 50
    else
        mkdir local_folder
        docker run -d -p 8080:80 -p 8021:21 -p 8022:22 \
            --name galaxy \
            --privileged=true \
            -v `pwd`/local_folder:/export/ \
            -e GALAXY_CONFIG_ALLOW_USER_DATASET_PURGE=True \
            -e GALAXY_CONFIG_ALLOW_LIBRARY_PATH_PASTE=True \
            -e GALAXY_CONFIG_ENABLE_USER_DELETION=True \
            -e GALAXY_CONFIG_ENABLE_BETA_WORKFLOW_MODULES=True \
            -v /tmp/:/tmp/ \
            quay.io/bgruening/galaxy
    fi
  - sleep 10
  - docker ps

script:
  # Test submitting jobs to an external slurm cluster
  - |
      if ! [ "${COMPOSE}" ]
      then
        cd $TRAVIS_BUILD_DIR/test/slurm/ && bash test.sh && cd $TRAVIS_BUILD_DIR
      fi
  # Test submitting jobs to an external gridengine cluster
  - cd $TRAVIS_BUILD_DIR/test/gridengine/ && bash test.sh && cd $TRAVIS_BUILD_DIR
  # Test FTP Server
  - curl -v --fail $BIOBLEND_GALAXY_URL/api/version
  - date > time.txt && curl -v --fail -T time.txt ftp://localhost:8021 --user $GALAXY_USER:$GALAXY_USER_PASSWD
  - curl -v --fail ftp://localhost:8021 --user $GALAXY_USER:$GALAXY_USER_PASSWD

  # Test SFTP Server
  - sshpass -p $GALAXY_USER_PASSWD sftp -v -P 8022 -o User=$GALAXY_USER -o "StrictHostKeyChecking no" localhost <<< $'put time.txt'
  # Test self-signed HTTPS
  - docker run -d -p 443:443 -e "USE_HTTPS=True" quay.io/bgruening/galaxy
  - sleep 60s && curl -v -k --fail https://127.0.0.1:443/api/version
  - echo | openssl s_client -connect 127.0.0.1:443 2>/dev/null | openssl x509 -issuer -noout| grep selfsigned

  - cd $TRAVIS_BUILD_DIR/test/bioblend/ && bash test.sh && cd $TRAVIS_BUILD_DIR/
  # Test the 'old' tool installation script
  - docker run quay.io/bgruening/galaxy bash -c 'install-repository "--url https://toolshed.g2.bx.psu.edu -o iuc --name bedtools --panel-section-name 'BEDTools'"'
  # Test the 'new' tool installation script
  - docker run quay.io/bgruening/galaxy bash -c "install-tools $GALAXY_HOME/ephemeris/sample_tool_list.yaml"
  # Test Docker in Docker, used by Interactive Environments; This needs to be at the end as Docker takes some time to start.
  - docker exec -i -t galaxy docker info
  - docker stop galaxy
  # Test the Conda installation
  - docker run -i -t quay.io/bgruening/galaxy bash -c 'export PATH=/tool_deps/_conda/bin/:$PATH && conda --version && conda install samtools -c bioconda --yes'

after_success:
  - |
    if [ "$TRAVIS_PULL_REQUEST" == "false" -a "$TRAVIS_BRANCH" == "master" ]
    then
      echo "Generate and deploy html documentation"
      ./docs/bin/deploy_docs
    fi


notifications:
  webhooks:
    urls:
      - https://webhooks.gitter.im/e/559f5480ac7a4ef238af
    on_success: change
    on_failure: always
    on_start: never