diff --git a/src/v/storage/tests/compaction_fuzz_test.cc b/src/v/storage/tests/compaction_fuzz_test.cc
index e82194c374f6..403ac2fa9eff 100644
--- a/src/v/storage/tests/compaction_fuzz_test.cc
+++ b/src/v/storage/tests/compaction_fuzz_test.cc
@@ -9,6 +9,7 @@
 
 #include "base/vlog.h"
 #include "container/fragmented_vector.h"
+#include "model/namespace.h"
 #include "model/record_batch_types.h"
 #include "model/timeout_clock.h"
 #include "random/generators.h"
@@ -122,11 +123,24 @@ struct ot_state_consumer {
 /// by the set of segment base offset values.
 ss::future<ot_state> arrange_and_compact(
   const fragmented_vector<model::record_batch>& batches,
-  std::deque<model::offset> arrangement) {
+  std::deque<model::offset> arrangement,
+  bool simulate_internal_topic_compaction = false) {
     std::sort(arrangement.begin(), arrangement.end());
-    storage::disk_log_builder b1;
+    storage::log_config cfg = storage::log_builder_config();
+    auto offset_translator_types = model::offset_translator_batch_types();
+    auto raft_group_id = raft::group_id{0};
+    storage::disk_log_builder b1(cfg, offset_translator_types, raft_group_id);
+
+    auto ns = simulate_internal_topic_compaction
+                ? model::kafka_internal_namespace
+                : model::kafka_namespace;
+    model::ntp log_ntp(
+      ns,
+      model::topic_partition(
+        model::topic(random_generators::gen_alphanum_string(8)),
+        model::partition_id{0}));
     std::exception_ptr error = nullptr;
-    co_await b1.start();
+    co_await b1.start(log_ntp);
     try {
         for (const auto& b : batches) {
             co_await b1.add_batch(b.copy());
@@ -138,11 +152,13 @@ ss::future<ot_state> arrange_and_compact(
             }
         }
         ss::abort_source as;
-        co_await b1.apply_compaction(storage::compaction_config(
+        auto compact_cfg = storage::compaction_config(
           batches.back().last_offset(),
           std::nullopt,
           ss::default_priority_class(),
-          as));
+          as);
+        std::ignore = co_await b1.apply_sliding_window_compaction(compact_cfg);
+        co_await b1.apply_adjacent_merge_compaction(compact_cfg);
     } catch (...) {
         error = std::current_exception();
     }
@@ -185,11 +201,25 @@ std::deque<model::offset> generate_random_arrangement(
 SEASTAR_THREAD_TEST_CASE(test_compaction_with_different_segment_arrangements) {
     auto batches = generate_random_record_batches(1000, 10);
     auto expected_ot
-      = arrange_and_compact(batches, std::deque<model::offset>{}).get();
+      = arrange_and_compact(batches, std::deque<model::offset>{}, false).get();
+    std::vector<size_t> num_segments = {10, 100, 1000};
+    for (auto num : num_segments) {
+        auto arrangement = generate_random_arrangement(batches, num);
+        auto actual_ot = arrange_and_compact(batches, arrangement, false).get();
+        BOOST_REQUIRE(expected_ot.gap_offset == actual_ot.gap_offset);
+        BOOST_REQUIRE(expected_ot.gap_length == actual_ot.gap_length);
+    }
+}
+
+SEASTAR_THREAD_TEST_CASE(
+  test_compaction_with_different_segment_arrangements_simulate_internal_topic) {
+    auto batches = generate_random_record_batches(1000, 10);
+    auto expected_ot
+      = arrange_and_compact(batches, std::deque<model::offset>{}, true).get();
     std::vector<size_t> num_segments = {10, 100, 1000};
     for (auto num : num_segments) {
         auto arrangement = generate_random_arrangement(batches, num);
-        auto actual_ot = arrange_and_compact(batches, arrangement).get();
+        auto actual_ot = arrange_and_compact(batches, arrangement, true).get();
         BOOST_REQUIRE(expected_ot.gap_offset == actual_ot.gap_offset);
         BOOST_REQUIRE(expected_ot.gap_length == actual_ot.gap_length);
     }