I got error messages like this:Error in RM2(maf = muts, sites = enhancer, window_size = window_size) : Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") : solving row 2440: negative widths are not allowed

[corner0426]

No description provided.

[reimand0]

Hello - based on this information it is difficult to debug this error message. Perhaps it is worth checking if the mutations in your input file contain indels whose coordinates may be flipped (ending coordinate smaller than starting coordinate). I hope this helps, please let me know! best, Jüri

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[corner0426]

Hello - based on this information it is difficult to debug this error message. Perhaps it is worth checking if the mutations in your input file contain indels whose coordinates may be flipped (ending coordinate smaller than starting coordinate). I hope this helps, please let me know! best, Jüri
…
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Hi, Thanks for your reply.
According to your suggestions, I revised my mutation files. Here is some example lines:

And I got the errors agin:
Error in RM2(maf = muts, sites = TFBS, window_size = window_size) :
Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") :
solving row 280577: negative widths are not allowed.

Is there something wrong with the line 280577 for my mutation files?
Kind regards.