Merge pull request #1613 from research-software-directory/1606-add-bioconductor

feat: add Bioconductor as package manager type

Author: ewan-escience

data-generation/real-data.js

@@ -1,5 +1,5 @@
-// SPDX-FileCopyrightText: 2023 - 2024 Ewan Cahen (Netherlands eScience Center) <[email protected]>
-// SPDX-FileCopyrightText: 2023 - 2024 Netherlands eScience Center
+// SPDX-FileCopyrightText: 2023 - 2025 Ewan Cahen (Netherlands eScience Center) <[email protected]>
+// SPDX-FileCopyrightText: 2023 - 2025 Netherlands eScience Center
 //
 // SPDX-License-Identifier: Apache-2.0
 
@@ -76,6 +76,8 @@ const dois = [
 const packageManagerLinks = [
 	{url: 'https://anaconda.org/conda-forge/parcels/', type: 'anaconda'},
 	{url: 'https://anaconda.org/conda-forge/numpy/', type: 'anaconda'},
+	{url: 'https://bioconductor.org/packages/release/bioc/html/BiocPkgTools.html', type: 'bioconductor'},
+	{url: 'https://bioconductor.org/packages/release/bioc/html/VanillaICE.html', type: 'bioconductor'},
 	{url: 'https://cran.r-project.org/web/packages/GGIR/index.html', type: 'cran'},
 	{url: 'https://cran.r-project.org/web/packages/readr/index.html', type: 'cran'},
 	{url: 'https://hub.docker.com/r/djrobstep/migra', type: 'dockerhub'},

database/005-create-relations-for-software.sql

@@ -47,6 +47,7 @@ CREATE TABLE repository_url (
 -- in the frontend file apiPackageManager.ts
 CREATE TYPE package_manager_type AS ENUM (
 	'anaconda',
+	'bioconductor',
 	'chocolatey',
 	'cran',
 	'crates',

frontend/components/software/edit/package-managers/apiPackageManager.ts

@@ -26,6 +26,12 @@ export const packageManagerSettings = {
     hostname: ['anaconda.org'],
     services: ['dependents']
   },
+  bioconductor: {
+    name: 'Bioconductor',
+    icon: '/images/bioconductor_logo_spot.svg',
+    hostname: ['bioconductor.org', 'www.bioconductor.org'],
+    services: []
+  },
   cran: {
     name: 'CRAN',
     icon: '/images/cran-r-logo.svg',