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DESCRIPTION
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DESCRIPTION
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Package: pirouette
Type: Package
Title: Create a Bayesian Posterior from a Phylogeny
Version: 1.6.8
Authors@R: c(
person("Richèl J.C.", "Bilderbeek", email = "[email protected]", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1107-7049")),
person("Giovanni", "Laudanno", email = "[email protected]", role = "aut"),
person("Thijs", "Janzen", role = "ctb"))
Maintainer: Richèl J.C. Bilderbeek <[email protected]>
Description:
Theoretical biologists are interested in measuring the extent
at which we can measure the truth. This package allows to
create a Bayesian posterior from a phylogeny that depicts
the true evolutionary relationships. The given and true phylogeny
can than be compared to the posterior phylogenies.
Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020)
"Quantifying the impact of an inference model in Bayesian phylogenetics"
<doi:10.1111/2041-210X.13514>.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://github.com/richelbilderbeek/pirouette/
BugReports: https://github.com/richelbilderbeek/pirouette/issues
Imports:
ape,
beautier (>= 2.6.2),
beastier (>= 2.4.6),
babette (>= 2.1.1),
DDD,
forcats,
magrittr,
mauricer (>= 2.5),
mcbette (>= 1.7),
nodeSub,
phangorn,
phytools,
plyr,
pryr,
readr,
stringr,
TESS,
tibble,
tidyr,
tracerer (>= 2.0.2),
xtable
Suggests:
devtools,
dplyr,
ggplot2,
knitr,
lintr,
markdown,
nLTT (>= 1.4.3),
rappdirs,
rmarkdown,
Rmpfr,
testthat (>= 2.1.0)
SystemRequirements: BEAST2 (https://www.beast2.org/)