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fixmate parameters #41

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ethering opened this issue Feb 12, 2015 · 1 comment
Open

fixmate parameters #41

ethering opened this issue Feb 12, 2015 · 1 comment

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@ethering
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bioruby-samtools currently only has the -r option implemented. please add options:
-p Disable FR proper pair check
-c Add template cigar ct tag
-O FORMAT Write output as FORMAT ('sam'/'bam'/'cram')
homonecloco added a commit to homonecloco/bioruby-samtools that referenced this issue Feb 24, 2015
@homonecloco
Added the options :r, :p, :c to fixmate partialy fixes rjpbonnal#41, …
260be0c 
…as it requires rjpbonnal#42 to work
@homonecloco
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It also need #44

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@homonecloco @ethering