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index_stats is not working in 2.3.5 #60

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MatthewRalston opened this issue May 19, 2016 · 5 comments
Open

index_stats is not working in 2.3.5 #60

MatthewRalston opened this issue May 19, 2016 · 5 comments

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@MatthewRalston
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I've indexed a bam file with samtools and receive true on the indexed command and index_stats returns an empty hash.
@homonecloco
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Hi Mat,
Can you provide an example? I am currently updating the gem to samtools-1.3.1 and it is passing the unit test for index_stat

homonecloco added a commit that referenced this issue May 24, 2016
@homonecloco
Improved unit test for index_stats #60
45e0a20
@MatthewRalston
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So are you saying a version >2.3.5 is passing?

@homonecloco
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yes, but if you have any issues let us know. And if it fails, please attach an example so I can test it.

@MatthewRalston
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An example as in a bam file? When I initially had this issue, the choice of BAM file was not important; ie the index stats command produced an empty hash {} in several instances.

@homonecloco
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Can you check if it is working now? I couldn't reproduce the bug on the unit tests, and added a few more.

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@homonecloco @MatthewRalston