From 87a456ff5e353d3ce17a4b50a7de4d8d2a48e147 Mon Sep 17 00:00:00 2001
From: An Nguyen <39999966+anthng@users.noreply.github.com>
Date: Sat, 1 Aug 2020 13:08:32 +0700
Subject: [PATCH 1/3] update plotly version 4.9.0

---
 plotly_visualize.py | 41 ++++++++++++++++++++---------------------
 1 file changed, 20 insertions(+), 21 deletions(-)

diff --git a/plotly_visualize.py b/plotly_visualize.py
index 545f525..b3454bb 100644
--- a/plotly_visualize.py
+++ b/plotly_visualize.py
@@ -40,12 +40,12 @@ def visualize_graph(G, node_labels, node_sizes=[], edge_weights=[], layout="grap
     for edge in G.edges():
         x0, y0 = positions[edge[0]]
         x1, y1 = positions[edge[1]]
-        edge_trace['x'] += [x0, x1, None]
-        edge_trace['y'] += [y0, y1, None]
+        edge_trace['x'] += tuple([x0, x1, None])
+        edge_trace['y'] += tuple([y0, y1, None])
 
     if edge_weights:
         for weight in edge_weights:
-            edge_trace['line']['width'].append(weight)
+            edge_trace['line']['width']+=tuple([weight])
     else:
         edge_trace['line']['width'] = [1]*len(G.edges())
 
@@ -76,22 +76,21 @@ def visualize_graph(G, node_labels, node_sizes=[], edge_weights=[], layout="grap
 
     for node in G.nodes():
         x, y = positions[node]
-        node_trace['x'].append(x)
-        node_trace['y'].append(y)
-
-    for adjacencies in G.adjacency_list():
-        node_trace['marker']['color'].append(len(adjacencies))
+        node_trace['x'] += tuple([x])
+        node_trace['y'] += tuple([y])
+        
+    for adjacencies in G.adjacency():
+        node_trace['marker']['color']+=tuple([len(adjacencies)])
 
     if not node_labels:
         node_labels = G.nodes()
 
     for node in node_labels:
-        node_trace['text'].append(node)
-
+        node_trace['text'] +=tuple([node])
 
     if node_sizes:
         for size in node_sizes:
-            node_trace['marker']['size'].append(size)
+            node_trace['marker']['size']+=tuple([size])
     else:
         node_trace['marker']['size'] = [1]*len(G.nodes())
 
@@ -155,27 +154,27 @@ def visualize_graph_3d(G, node_labels, node_sizes, filename, title="3d"):
     for edge in G.edges():
         x0, y0, z0 = positions[edge[0]]
         x1, y1, z1 = positions[edge[1]]
-        edge_trace['x'] += [x0, x1, None]
-        edge_trace['y'] += [y0, y1, None]
-        edge_trace['z'] += [z0, z1, None]
+        edge_trace['x'] += tuple([x0, x1, None])
+        edge_trace['y'] += tuple([y0, y1, None])
+        edge_trace['z'] += tuple([z0, z1, None])
 
 
     for node in G.nodes():
         x, y, z = positions[node]
-        node_trace['x'].append(x)
-        node_trace['y'].append(y)
-        node_trace['z'].append(z)
+        node_trace['x'] += tuple([x])
+        node_trace['y'] += tuple([y])
+        node_trace['z'] += tuple([z])
 
 
-    for adjacencies in G.adjacency_list():
-        node_trace['marker']['color'].append(len(adjacencies))
+    for adjacencies in G.adjacency():
+        node_trace['marker']['color']+=tuple([len(adjacencies)])
 
     for size in node_sizes:
-        node_trace['marker']['size'].append(size)
+        node_trace['marker']['size']+=tuple([size])
 
 
     for node in node_labels:
-        node_trace['text'].append(node)
+        node_trace['text'] +=tuple([node])
 
     axis = dict(showbackground=False,
                 showline=False,

From 0621b79c043d930231852233c46b4b35ad109162 Mon Sep 17 00:00:00 2001
From: An Nguyen <39999966+anthng@users.noreply.github.com>
Date: Sat, 1 Aug 2020 13:23:32 +0700
Subject: [PATCH 2/3] Update requirements.txt

---
 requirements.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/requirements.txt b/requirements.txt
index 37f464f..b4add54 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,4 +1,4 @@
 networkx==1.11
-plotly==2.0.16
+plotly==4.9.0
 pygraphviz==1.3.1
-numpy
\ No newline at end of file
+numpy

From 786e0ab53de0e5afd9cdae5f7ce6bac13d729b41 Mon Sep 17 00:00:00 2001
From: An Nguyen <39999966+anthng@users.noreply.github.com>
Date: Sat, 1 Aug 2020 14:24:30 +0700
Subject: [PATCH 3/3] Update plotly_visualize.py

---
 plotly_visualize.py | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/plotly_visualize.py b/plotly_visualize.py
index b3454bb..7399fcd 100644
--- a/plotly_visualize.py
+++ b/plotly_visualize.py
@@ -45,7 +45,8 @@ def visualize_graph(G, node_labels, node_sizes=[], edge_weights=[], layout="grap
 
     if edge_weights:
         for weight in edge_weights:
-            edge_trace['line']['width']+=tuple([weight])
+            #edge_trace['line']['width']+=tuple([weight])
+            edge_trace['line']['width'] = weight
     else:
         edge_trace['line']['width'] = [1]*len(G.edges())
 
@@ -55,9 +56,9 @@ def visualize_graph(G, node_labels, node_sizes=[], edge_weights=[], layout="grap
         text=[],
         mode='markers+text',
         textfont=dict(family='Calibri (Body)', size=25, color='black'),
-        opacity=100,
+        opacity=1,
         # hoverinfo='text',
-        marker=Marker(
+        marker=dict(
             showscale=True,
             # colorscale options
             # 'Greys' | 'Greens' | 'Bluered' | 'Hot' | 'Picnic' | 'Portland' |