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When attempting to use the readQTess3() function, I am only receiving a qlist with data from the 1st replicate run for my data. My tess3.obj file, however, has data for all 10 reps. Below shows the code that generates that object:
tess3.obj <- tess3(X=data,
coord=as.matrix(coo),
K=1:10,
rep=10,
max.iteration=500000,
method="projected.ls",
ploidy=2,
openMP.core.num=16,
keep="all") # which result to keep for each value of k.
However, the tlistK object generated with the following has data equal to only the first run in the tess3.obj for each K (instead of 10 runs for each K).
I have used the readQ function with STRUCTURE files which worked successfully and gave me a qlist with 10 runs for each K, so I was surprised by the readQTess3 output. Any help is greatly appreciated!
The text was updated successfully, but these errors were encountered:
When attempting to use the
readQTess3()
function, I am only receiving a qlist with data from the 1st replicate run for my data. Mytess3.obj
file, however, has data for all 10 reps. Below shows the code that generates that object:However, the
tlistK
object generated with the following has data equal to only the first run in thetess3.obj
for each K (instead of 10 runs for each K).I have used the
readQ
function with STRUCTURE files which worked successfully and gave me a qlist with 10 runs for each K, so I was surprised by thereadQTess3
output. Any help is greatly appreciated!The text was updated successfully, but these errors were encountered: