This repository contains different scripts that exemplify working with brain organization or (potentially) try to replicate previous findings. [work in progress]
This file includes broad descriptions of the most commonly used file types Nifti, Cifti and Gifti, usage of some python libraries (mostly nibabel, nilearn), the connectome workbench (mostly for data from the human connectome project (HCP)), FSL and rarely freesurfer and AFNI.
using the abagen python library & a surface atlas
