changed to pypi workflow

Author: Lucas Camillo

Diff for: .github/workflows/publish.yml

@@ -22,8 +22,7 @@ jobs:
           python -m pip install poetry
           poetry build
 
-      - name: Publish to Test PyPI
+      - name: Publish to PyPI
         uses: pypa/[email protected]
         with:
-          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
-          repository-url: https://test.pypi.org/legacy/
+          password: ${{ secrets.PYPI_API_TOKEN }}

Diff for: README.md

@@ -14,7 +14,7 @@
 [![download](https://static.pepy.tech/badge/pyaging)](https://pepy.tech/project/pyaging)
 [![star](https://img.shields.io/github/stars/rsinghlab/pyaging?logo=GitHub&color=red)](https://github.com/rsinghlab/pyaging/stargazers)
 
-## 🐍 **pyaging**: A Python-based compendium of GPU-optimized biological aging clocks
+## 🐍 **pyaging**: a Python-based compendium of GPU-optimized aging clocks
 
 `pyaging` is a cutting-edge Python package designed for the longevity research community, offering a comprehensive suite of GPU-optimized biological aging clocks.
 
@@ -31,6 +31,7 @@ With a growing number of aging clocks, comparing and analyzing them can be chall
 - [X] Include mammalian array example datasets
 - [X] Add feature to control logging verbosity
 - [ ] Publish to PyPi
+- [ ] Add percentage of missing features in anndata after age prediction for each clock
 - [ ] Add table in readthedocs with all clock metadata
 - [ ] Add and populate "Notes" tab in metadata
 - [ ] Integrate scAge and scRNAseq clocks (and datasets)

Diff for: docs/environment.yml

@@ -3,7 +3,7 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python=3.9
+  - python>=3.9
   - pip>=22.3
   - pip:
       - sphinx>=7.2.6

Diff for: poetry.lock

@@ -1,7 +1,7 @@
 [tool.poetry]
 name = "pyaging"
 version = "0.0.15"
-description = "A Python-based compendium of GPU-optimized biological aging clocks."
+description = "A Python-based compendium of GPU-optimized aging clocks."
 authors = ["Lucas Paulo de Lima Camillo <[email protected]>"]
 license = "BSD"
 readme = "README.md"
@@ -12,12 +12,12 @@ repository = "https://github.com/rsinghlab/pyaging"
 
 [tool.poetry.dependencies]
 python = "^3.9"
-scikit-learn = "^1.3.2"
-pandas = "^2.1.3"
-torch = "^2.1.1"
-numpy = "^1.26.2"
+scikit-learn = "^1.3.0"
+pandas = "^2.0.0"
+torch = "^2.0.0"
+numpy = "^1.26.0"
 pyBigWig = "^0.3.22"
-anndata = "^0.10.3"
+anndata = "^0.10.0"
 
 [tool.poetry.dev-dependencies]
 sphinx = "^7.1.2"