renv::snapshot() not working and returning an error #2110
Comments
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Can you provide the output of |
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This is the most notable part of the
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Also, whenever I enter the project, I usually get two of these warning messages after renv activates. After running diagnostic, it's giving it 4 times. Not sure if that helps at all (doesn't give this warning for any other project of mine)
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... why not just share the whole report? |
Diagnostics Report [renv 1.1.2]/etc/lsb-release -----------------------------------------------------------DISTRIB_ID=Ubuntu /etc/os-release ------------------------------------------------------------PRETTY_NAME="Ubuntu 22.04.4 LTS" Session Info ---------------------------------------------------------------R version 4.3.3 (2024-02-29) Matrix products: default locale: time zone: Etc/UTC attached base packages: loaded via a namespace (and not attached): Project --------------------------------------------------------------------Project path: "~/repos/advance42" Status ---------------------------------------------------------------------The following package(s) are out of sync [lockfile != library]: CRAN -----------------------------------------------------------------------
See Packages -------------------------------------------------------------------Traceback (most recent calls last): R System Requirements ------------------------------------------------------Traceback (most recent calls last): ABI ------------------------------------------------------------------------The following packages were built against a newer version of Rcpp than is currently available:
User Profile ---------------------------------------------------------------[1] Source Package Require Version Dev Settings -------------------------------------------------------------------List of 13 Options --------------------------------------------------------------------List of 12 Environment Variables ------------------------------------------------------HOME = /home/ubuntu PATH -----------------------------------------------------------------------
Cache ----------------------------------------------------------------------There are a total of 265 packages installed in the renv cache. |
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Does your project contain R Markdown files or Quarto Markdown files with custom chunk headers? The warnings printed would suggest you have some labels which aren't plain strings; rather, they're character vectors or something else. Most likely, there's a file in your project that's tripping up |
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I have a potential fix / workaround for this in the development version of renv. You can try installing it with: Can you give this a try and let me know if the issue persists? |
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I do have a lot of .Rnw files with those. My other projects have this as well though, so maybe there's something off about one of them. I tried running snapshot again after downloading the development version, but got the same error |
This was not always the case for this project, but when I run
renv::snapshot(), it immediately returns the following error:Error in if (package == "R") return() :
missing value where TRUE/FALSE needed
Traceback (most recent calls last):
9: renv::snapshot()
8: alt <- new <- renv_lockfile_create(
project = project,
type = type,
libpaths = libpaths,
packages = packages,
exclude = exclude,
prompt = prompt,
force = force,
dev = dev
) at snapshot.R#179
7: lockfile <- withRestarts(
renv_lockfile_create_impl(project, type, libpaths, packages, exclude, prompt, force, dev = dev),
renv_recompute_records = function() {
renv_dynamic_reset()
renv_lockfile_create_impl(project, type, libpaths, packages, exclude, prompt, force, dev = dev)
}
) at lockfile.R#181
6: withOneRestart(expr, restarts[[1L]])
5: doWithOneRestart(return(expr), restart)
4: lockfile <- withRestarts(
renv_lockfile_create_impl(project, type, libpaths, packages, exclude, prompt, force, dev = dev),
renv_recompute_records = function() {
renv_dynamic_reset()
renv_lockfile_create_impl(project, type, libpaths, packages, exclude, prompt, force, dev = dev)
}
) at lockfile.R#181
3: records <- renv_snapshot_packages(
packages = setdiff(packages, exclude),
libpaths = libpaths,
project = project
) at lockfile.R#202
2: paths <- renv_package_dependencies(
packages = packages,
libpaths = libpaths,
callback = callback,
project = project
) at snapshot.R#1176
1: for (package in packages)
renv_package_dependencies_impl(package, visited, libpaths, fields, callback, project) at package.R#292
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