Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feature request: FILTER field for vcf-to-txt #143

Open
jdm204 opened this issue Apr 6, 2021 · 0 comments
Open

Feature request: FILTER field for vcf-to-txt #143

jdm204 opened this issue Apr 6, 2021 · 0 comments

Comments

@jdm204
Copy link

jdm204 commented Apr 6, 2021

Currently, there are command line options to output genotype calls and arbitrary INFO and FORMAT fields, but there doesn't seem to be a way to extract the standard FILTER column (nor does the tool keep only PASS variants etc), so ant FILTER information is lost.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jdm204