Paintera Convert paintera-conversion-helper-1.0.0

🚀 Features

• Build with JDK 21
• Support zarr
• Use N5URI

🐛 Bug Fixes

• Symlink instead of script for cli tool
• Revert -> reverse

📚 Documentation

• Update README

🎨 Styling

• Formatting

⚙️ Miscellaneous Tasks

• Add logback config
• Minor improvements
• Cleanup code
• Version bump, log in final application

POM

• Fix forum.image.sc tag link

Build

• Version bumps, use jdk21, replace fatjar with installer
• Generate installers

Paintera conversion helper 0.10.0

Changelog

• Use relative paths to N5 container in label-to-block mapping when converting label multiset datasets.
• Allow to use existing s0 dataset as raw data input to skip conversion and only generate scale levels
• Removed deprecated paintera-conversion-helper command in favor of newer paintera-convert

Bug fixes

• Fix meshes not showing up in converted label datasets on Windows after converting on Janelia cluster #45
• Fix NullPointerException in Gson adapter initialization when running conversion on Janelia cluster #40
• Fix duplicate group name /data/data/ instead of just /data/ in label multiset converter

paintera-conversion-helper-0.9.2

paintera-conversion-helper 0.9.2

Previous release: 0.9.1

Changelog

Bug Fixes

• It is not possible to convert a dataset into a Paintera dataset at the same container. Fix this by allowing the same container for input and output if the input dataset and output group are not the same. (#37)

paintera-conversion-helper-0.9.1

Previous release: 0.9.0

Changelog

Bug Fixes

• Make --help message more concise

paintera-conversion-helper-0.9.0

paintera-conversion-helper 0.9.0

Previous release: 0.8.1

Changelog

New Features

• Add new entry point PainteraConvert with improved synopsis and subcommands instead of multiple entry points (#33). Deprecate CommandLineConverter and ExtractHighestResolutionLabelDataset entry points.

paintera-conversion-helper-0.8.1

Default to n5 backend for label-block-lookup by default.

paintera-conversion-helper-0.8.0

New Features

• Consider the fragment-segment-assignment of a Paintera dataset when exporting the highest resolution scale level with the --consider-fragment-segment-assignment option and add additional assignments with the --additional-assignment option.

Release 0.4.0

• add travisCI support
• fix: set scales to empty array if not defined
• add option to use n5 as backend for label block lookup
• add option to specify block size for each scale level
• add option for max num entries in label multisets