How to name the source, target, ligand/receptor complex

[chaparroeduardo7]

Hi, I am currently running Liana and it is working just fine. The problem I am encountering is that the source, target, ligand/receptor complex are completely changed to numeric identifiers. Sorry if this a very basic question but I haven't been able to find a solution, it's my first time using R or any programming language.

[dbdimitrov]

Hi,

It's very likely that you are not passing your desired cell_type label to idents_col .
So, I assume it should be okay, if you pass idents_col='cell_type' to liana_wrap.

Hope this helps.