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get_curated_omni function reports an error #181

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HMU-lyz opened this issue Oct 24, 2024 · 1 comment
Open

get_curated_omni function reports an error #181

HMU-lyz opened this issue Oct 24, 2024 · 1 comment

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@HMU-lyz
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HMU-lyz commented Oct 24, 2024

1729737694091
As you can see, I loaded these R packages correctly, but when I run the get_curated_omni function, I get an error. I am not sure what the reason is now. Thank you.

@HMU-lyz
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HMU-lyz commented Oct 24, 2024

OmnipathR::import_omnipath_annotations is a good function that can get annotation information of ligand receptor genes in Omnipath, but it does not support direct annotation of Consensus resources in the liana package. However, I only use Consensus resources when predicting cell communication using the liana package. I hope the liana author can optimize this aspect to facilitate the direct call of annotation information of Consensus resources from the liana package.

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