NAMESPACE

# Generated by roxygen2: do not edit by hand

export(ballon_plot_data_to_result_table)
export(calc_weighted_corr)
export(categorize_cell_lines)
export(compute_freq_alt)
export(convert_to_0_to_1_using_xminusmin_by_maxminusmin)
export(cyj_graph_maker_from_dist_mat)
export(generate_composite_mat_and_gene_weights)
export(graphNELtoJSON)
export(keep_only_high_level_cnas)
export(make_balloon_plot_data_from_comparison_result)
export(make_balloon_plot_data_from_mtc)
export(map_mean_similarity_to_gradient)
export(pair_dist)
export(plot_balloon_plot)
export(plot_joyplot)
export(plot_mds)
export(return_first_part)
export(run_comparison)
export(run_comparison_config_list)
export(run_shiny_app)
export(tc_geneset_comparison)
export(tic)
export(toc)
import(graph)
import(jsonlite)
importFrom(MASS,isoMDS)
importFrom(cluster,daisy)
importFrom(cowplot,draw_label)
importFrom(cowplot,ggdraw)
importFrom(cowplot,plot_grid)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(dplyr,mutate)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggridges,geom_density_ridges)
importFrom(grDevices,colorRampPalette)
importFrom(magrittr,"%>%")
importFrom(reshape2,melt)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,read.table)
importFrom(utils,write.table)
importFrom(weights,wtd.cors)