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setup.py
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setup.py
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from setuptools import setup, find_packages
with open('long_description.rst') as f:
ld = f.read()
__version__ = eval(open('mitty/version.py').read().split('=')[1])
setup(
name='mitty',
version=__version__,
description='Simulator for genomic data',
long_description=ld,
author='Seven Bridges Genomics',
author_email='[email protected]',
url='https://github.com/sbg/Mitty',
download_url='https://github.com/sbg/Mitty/archive/development.zip',
keywords=['simulator', 'genomics', 'ngs', 'read mapper', 'aligner', 'variant caller'],
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'License :: OSI Approved :: Apache Software License',
'Programming Language :: Python :: 3.4',
],
python_requires='>=3.4',
packages=find_packages(include=['mitty*']),
include_package_data=True,
entry_points={'console_scripts': ['mitty = mitty.cli:cli']},
install_requires=[
'cython',
'setuptools>=24.3.0',
'numpy>=1.11.0',
'click>=3.3',
'pysam==0.10.0',
'matplotlib>=1.3.0',
'scipy',
'pandas>=0.20.3',
'bokeh>=0.12.13',
'jupyter>=1.0.0',
'cytoolz',
'xarray>=0.9.6',
'nose'
],
test_suite='nose.collector',
tests_require=['nose'],
)