- Least variant threshold for comparison is decreased to 1 non-ref variant (previously it was requiring 2 variants per sample)
- Bug fix for consolidating final Mendelian decision of variants that overlaps with a violation variant
- Region based Mendelian decision assesment is added
- Violation regions are produced as a BED file for output
- VBT is now published at SBG Github!
- Mendelian detailed logs table: variant category (SNP, INSERTION, DELETION) assign order changed from mother>father>child to child>father>mother
- Ref overlap mode becomes the default mode of VBT
- Trim Variant from beginning is set to false by default in Mendelian tool
- Quality column is added to the output trio of mendelian vcf
- A new optional parameter is added that selects INFO tags from input file to be printed in the output trio file in Mendelian tool
- VBT source is refactored (Duplicate code segment elimination, splitting long functions etc.)
- GPL License header is added to all files
- Complex Skipped variant assigning is corrected (a lower boundary is introduced not to mark an included variant as complex skipped)
- GA4GH output variant records with non BK/BD annotations are corrected
- Sample test data is added under Example/
- Readme file is modified
- Detailed install guide is added
- Sample execution command is added
- General refactoring to increase code readability