diff --git a/tests/src/test/configurations/dynamodb-to-alternator-part1.yaml b/tests/src/test/configurations/dynamodb-to-alternator-part1.yaml
new file mode 100644
index 00000000..555025d6
--- /dev/null
+++ b/tests/src/test/configurations/dynamodb-to-alternator-part1.yaml
@@ -0,0 +1,37 @@
+source:
+  type: dynamodb
+  table: SkippedSegments
+  region: dummy
+  endpoint:
+    host: http://dynamodb
+    port: 8000
+  credentials:
+    accessKey: dummy
+    secretKey: dummy
+  scanSegments: 3
+
+target:
+  type: dynamodb
+  table: SkippedSegments
+  region: dummy
+  endpoint:
+    host: http://scylla
+    port: 8000
+  credentials:
+    accessKey: dummy
+    secretKey: dummy
+  streamChanges: false
+
+savepoints:
+  path: /app/savepoints
+  intervalSeconds: 300
+
+skipSegments: [1, 2]
+
+validation:
+  compareTimestamps: true
+  ttlToleranceMillis: 60000
+  writetimeToleranceMillis: 1000
+  failuresToFetch: 100
+  floatingPointTolerance: 0.001
+  timestampMsTolerance: 0
diff --git a/tests/src/test/configurations/dynamodb-to-alternator-part2.yaml b/tests/src/test/configurations/dynamodb-to-alternator-part2.yaml
new file mode 100644
index 00000000..9a3a5323
--- /dev/null
+++ b/tests/src/test/configurations/dynamodb-to-alternator-part2.yaml
@@ -0,0 +1,37 @@
+source:
+  type: dynamodb
+  table: SkippedSegments
+  region: dummy
+  endpoint:
+    host: http://dynamodb
+    port: 8000
+  credentials:
+    accessKey: dummy
+    secretKey: dummy
+  scanSegments: 3
+
+target:
+  type: dynamodb
+  table: SkippedSegments
+  region: dummy
+  endpoint:
+    host: http://scylla
+    port: 8000
+  credentials:
+    accessKey: dummy
+    secretKey: dummy
+  streamChanges: false
+
+savepoints:
+  path: /app/savepoints
+  intervalSeconds: 300
+
+skipSegments: [0]
+
+validation:
+  compareTimestamps: true
+  ttlToleranceMillis: 60000
+  writetimeToleranceMillis: 1000
+  failuresToFetch: 100
+  floatingPointTolerance: 0.001
+  timestampMsTolerance: 0
diff --git a/tests/src/test/scala/com/scylladb/migrator/alternator/DynamoDBInputFormatTest.scala b/tests/src/test/scala/com/scylladb/migrator/alternator/DynamoDBInputFormatTest.scala
index 277c144e..9e60bb55 100644
--- a/tests/src/test/scala/com/scylladb/migrator/alternator/DynamoDBInputFormatTest.scala
+++ b/tests/src/test/scala/com/scylladb/migrator/alternator/DynamoDBInputFormatTest.scala
@@ -69,7 +69,8 @@ class DynamoDBInputFormatTest extends munit.FunSuite {
       maxMapTasks = configuredMaxMapTasks,
       readThroughput = configuredReadThroughput,
       throughputReadPercent = configuredThroughputReadPercent,
-      description = tableDescriptionBuilder.build()
+      description = tableDescriptionBuilder.build(),
+      skipSegments = None
     )
     val splits = new DynamoDBInputFormat().getSplits(jobConf, 1)
 
diff --git a/tests/src/test/scala/com/scylladb/migrator/alternator/SkippedSegmentsTest.scala b/tests/src/test/scala/com/scylladb/migrator/alternator/SkippedSegmentsTest.scala
new file mode 100644
index 00000000..d2c0b505
--- /dev/null
+++ b/tests/src/test/scala/com/scylladb/migrator/alternator/SkippedSegmentsTest.scala
@@ -0,0 +1,68 @@
+package com.scylladb.migrator.alternator
+
+import com.scylladb.migrator.SparkUtils.{submitSparkJob, successfullyPerformMigration}
+import software.amazon.awssdk.services.dynamodb.model.{AttributeValue, PutItemRequest, ResourceNotFoundException, ScanRequest}
+
+import java.util.UUID
+import scala.jdk.CollectionConverters._
+import scala.util.chaining._
+
+class SkippedSegmentsTest extends MigratorSuite {
+
+  withTable("SkippedSegments").test("Run partial migrations") { tableName =>
+    // We rely on the fact that both config files have `scanSegments: 3` and
+    // complementary `skipSegments` properties
+    val configPart1 = "dynamodb-to-alternator-part1.yaml"
+    val configPart2 = "dynamodb-to-alternator-part2.yaml"
+
+    createRandomData(tableName)
+
+    // Initially, the target table does not exist
+    try {
+      targetAlternator.describeTable(describeTableRequest(tableName))
+      fail(s"The table ${tableName} should not exist yet")
+    } catch {
+      case _: ResourceNotFoundException =>
+        () // OK
+    }
+
+    // Perform the first part of the migration
+    successfullyPerformMigration(configPart1)
+
+    // Verify that some items have been copied to the target database …
+    val itemCount = targetAlternatorItemCount(tableName)
+    assert(itemCount > 90L && itemCount < 110L)
+    // … but not all of them, hence the validator fails
+    submitSparkJob(configPart2, "com.scylladb.migrator.Validator").exitValue().tap { statusCode =>
+      assertEquals(statusCode, 1)
+    }
+
+    // Perform the other (complementary) part of the migration
+    successfullyPerformMigration(configPart2)
+
+    // Validate that all the data from the source have been migrated to the target database
+    submitSparkJob(configPart2, "com.scylladb.migrator.Validator").exitValue().tap { statusCode =>
+      assertEquals(statusCode, 0, "Validation failed")
+    }
+  }
+
+  def createRandomData(tableName: String): Unit = {
+    for (_ <- 1 to 300) {
+      val itemData = Map(
+        "id" -> AttributeValue.fromS(UUID.randomUUID().toString),
+        "foo" -> AttributeValue.fromS(UUID.randomUUID().toString),
+        "bar" -> AttributeValue.fromS(UUID.randomUUID().toString),
+        "baz" -> AttributeValue.fromS(UUID.randomUUID().toString)
+      )
+      sourceDDb.putItem(PutItemRequest.builder().tableName(tableName).item(itemData.asJava).build())
+    }
+  }
+
+  def targetAlternatorItemCount(tableName: String): Long =
+    targetAlternator
+      .scanPaginator(ScanRequest.builder().tableName(tableName).build())
+      .items()
+      .stream()
+      .count()
+
+}