_pkgdown.yml

url: https://seandavi.github.io/sars2pack/
template:
  params:
    bootswatch: flatly
    ganalytics: UA-93043521-4
home:
  title: sars2pack
  type: inverse
reference:
- title: Overview of the package
  contents: sars2pack-package
- title: Data resources
  desc: Data resources that are accessible from this package are somewhat arbitrarily
    divided into general groupings. For details of each dataset, click on the link.
    For an overview of data resources, see the Datasets vignette.
- subtitle: Case/test tracking data resources
  desc: Access datasets that provide insight into how much and where people are moving
    and how those metrics change over time.
  contents: has_concept("case-tracking")
- subtitle: Mobility data resources
  desc: Access datasets that provide insight into how much and where people are moving
    and how those metrics change over time.
  contents: has_concept("mobility")
- subtitle: projections
  contents: has_concept("projections")
- subtitle: healthcare systems and capacity
  contents: has_concept("healthcare-systems")
- subtitle: genetic lineage
  contents: has_concept("lineage")
- subtitle: Non-pharmaceutical interventions
  desc: Datasets that catalog details of NPI in the US and Internationally.
  contents: has_concept("NPI")
- subtitle: Line lists
  desc: Line lists are collections of individual cases and their characteristics.
  contents: has_concept("individual-cases")
- subtitle: Social and economic impacts
  desc: These datasets help to understand the economic and societal impacts of COVID
    and associated policy interventions.
  contents: has_concept("economics")
- subtitle: Excess deaths
  desc: '''Excess mortality'' refers to the difference between deaths from all causes
    during the pandemic and the historic seasonal average. For many jurisdictions
    for which data are available, this figure is higher than the official Covid-19
    fatalities that are published by governments each day. While not all of these
    deaths are necessarily attributable to the disease, it does leave a number of
    unexplained deaths that suggests that the official figures of deaths attributed
    may significant undercounts of the pandemic''s impact.'
  contents: has_concept("excess-deaths")
- title: Plotting and visualization
  desc: These are special purpose helper plots for sars2pack. Note that most are simply
    wrappers around ggplot2 and friends.
  contents: has_concept("plotting")
- title: Additional datasets
  desc: These datasets include miscellaneous enrichment datasets for joining with
    COVID-19 datasets or represent one-off data types.
  contents:
  - has_concept("data-import")
  - -has_concept("individual-cases")
  - -has_concept("plotting")
  - -has_concept("healthcare-systems")
  - -has_concept("lineage")
  - -has_concept("projections")
  - -has_concept("mobility")
  - -has_concept("NPI")
  - -has_concept("economics")
  - -has_concept("case-tracking")
- title: Additional functionality
  desc: Find additional functionality related to analysis, plotting, and data included
    with the package. These extra datasets include miscellaneous  enrichment datasets
    for joining with COVID-19 datasets or represent one-off data types.
  contents:
  - -has_concept("individual-cases")
  - -has_concept("data-import")
  - -has_concept("plotting")
  - -has_concept("healthcare-systems")
  - -has_concept("lineage")
  - -has_concept("projections")
  - -has_concept("mobility")
  - -has_concept("NPI")
  - -has_concept("economics")
  - -has_concept("case-tracking")
navbar:
  right:
  - icon: fa-github
    href: https://github.com/seandavi/sars2pack
development:
  mode: auto