xolotl should support standalone integration

[sg-s]

See HDF5 API for C++

• g++ should compile a standalone binary
• should write a wrapper function that is multithreaded, to run N-1 threads
• each thread reads a .mat file with some integration parameters, using the HDF5 library
• each thread should write out V, Ca (and maybe other things) to a .mat file (using the HDF5 library)

advantages over xgrid:

• will not need MATLAB's parallel processing toolbox
• should be much lighter on memory, since we're using multithreading, not multiprocessing
• allows for MATLAB-less computation, since standalone binary can work on its own

Steps to be done:

• write a function that writes out state to disk in a binary format (see this)
• write some C++ code that can read out written states from disk (see this)
• write a new version of mexTemplate that can uses a different entry point
• write a fake version of mex.h that provides some basic functionality for compatibility
• write a new version of transpile

[alec-hoyland]

This is a great idea

…

On April 8, 2019 6:01:30 PM EDT, Srinivas Gorur-Shandilya ***@***.***> wrote: See [HDF5 API for C++](https://support.hdfgroup.org/HDF5/doc/cpplus_RM/index.html) - [ ] g++ should compile a standalone binary - [ ] should write a wrapper function that is multithreaded, to run N-1 threads - [ ] each thread reads a .mat file with some integration parameters, using the HDF5 library - [ ] each thread should write out V, Ca (and maybe other things) to a .mat file (using the HDF5 library) advantages over `xgrid`: * will not need MATLAB's parallel processing toolbox * should be much lighter on memory, since we're using multithreading, not multiprocessing * allows for MATLAB-less computation, since standalone binary can work on its own -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: #397

-- Sent from my Android device with K-9 Mail. Please excuse my brevity.

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